Wall clock time and date at job start Tue Mar 31 2020 22:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.33640 * 122.74493 * 84.73635 * 4 2 1 6 6 S 1.76204 * 107.92096 * 179.97438 * 5 4 2 7 7 C 1.70977 * 90.28245 * 0.27099 * 6 5 4 8 8 C 1.50701 * 124.91700 * 179.84351 * 7 6 5 9 9 N 1.46498 * 109.46849 * 269.99935 * 8 7 6 10 10 C 1.34775 * 120.00102 * 179.97438 * 9 8 7 11 11 O 1.21361 * 119.99772 * 0.02562 * 10 9 8 12 12 C 1.49452 * 120.00403 * 180.02562 * 10 9 8 13 13 O 1.21350 * 119.99697 * 0.02562 * 12 10 9 14 14 N 1.34770 * 120.00047 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00078 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47352 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46968 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46797 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00245 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99863 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00252 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46857 * 90.00207 * 22 20 18 24 24 H 1.48499 * 109.47294 * 210.00285 * 22 20 18 25 25 H 1.48496 * 109.47091 * 330.00484 * 22 20 18 26 26 N 1.29032 * 110.16998 * 359.84303 * 7 6 5 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.07997 * 126.04125 * 0.03398 * 5 4 2 35 35 H 1.09000 * 109.46861 * 29.99774 * 8 7 6 36 36 H 1.09004 * 109.47076 * 150.00192 * 8 7 6 37 37 H 0.96995 * 120.00345 * 0.02562 * 9 8 7 38 38 H 0.97002 * 120.00239 * 0.02562 * 14 12 10 39 39 H 1.09000 * 109.46920 * 299.99837 * 15 14 12 40 40 H 1.09004 * 109.47521 * 59.99661 * 15 14 12 41 41 H 1.09000 * 109.46837 * 299.99719 * 16 15 14 42 42 H 1.08994 * 109.46877 * 59.99994 * 16 15 14 43 43 H 1.09000 * 109.47068 * 299.99524 * 17 16 15 44 44 H 1.08993 * 109.47297 * 59.99691 * 17 16 15 45 45 H 0.96997 * 120.00214 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.1761 -0.0991 -2.4101 6 16 2.7836 -1.2838 -3.5644 7 6 2.7763 -2.4853 -2.3479 8 6 3.1955 -3.9188 -2.5488 9 7 2.0335 -4.7156 -2.9500 10 6 2.1707 -6.0353 -3.1871 11 8 3.2568 -6.5635 -3.0677 12 6 0.9854 -6.8481 -3.5969 13 8 -0.1005 -6.3199 -3.7167 14 7 1.1228 -8.1676 -3.8345 15 6 -0.0389 -8.9643 -4.2368 16 6 0.3868 -10.4197 -4.4411 17 6 -0.8264 -11.2516 -4.8619 18 6 -0.4073 -12.6851 -5.0626 19 1 0.6215 -12.9739 -4.9061 20 6 -1.3373 -13.6281 -5.4459 21 7 -2.5901 -13.2764 -5.6370 22 14 -0.8177 -15.4049 -5.6954 23 1 -0.9600 -16.1464 -4.4166 24 1 -1.6791 -16.0320 -6.7297 25 1 0.5991 -15.4489 -6.1380 26 7 2.3599 -1.9869 -1.2329 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.9592 0.9381 -2.6189 35 1 3.9568 -3.9690 -3.3273 36 1 3.6018 -4.3125 -1.6171 37 1 1.1655 -4.2934 -3.0457 38 1 1.9909 -8.5898 -3.7391 39 1 -0.8005 -8.9148 -3.4586 40 1 -0.4451 -8.5700 -5.1683 41 1 1.1485 -10.4696 -5.2192 42 1 0.7925 -10.8137 -3.5094 43 1 -1.5885 -11.2017 -4.0842 44 1 -1.2319 -10.8573 -5.7936 45 1 -3.2443 -13.9397 -5.9070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286733821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:30 Heat of formation + Delta-G solvation = -49.184690 kcal Electronic energy + Delta-G solvation = -25175.661195 eV Core-core repulsion = 21319.371472 eV Total energy + Delta-G solvation = -3856.289723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 15.81 seconds Orbital eigenvalues (eV) -40.85106 -40.45004 -38.59251 -36.31643 -35.68081 -34.81166 -33.32667 -31.25757 -30.74954 -28.48516 -27.55229 -27.08620 -25.28818 -24.13319 -22.53087 -21.63498 -20.80424 -20.26694 -19.81501 -18.79389 -18.06253 -17.06935 -16.37848 -16.21612 -16.03459 -15.80394 -15.24343 -15.07474 -14.89404 -14.70136 -14.45056 -14.39661 -13.91118 -13.71646 -13.52221 -13.27553 -12.87961 -12.64898 -12.55448 -12.31442 -11.90291 -11.80767 -11.77718 -11.69798 -11.66949 -11.25614 -10.91460 -10.76807 -10.60824 -10.19134 -9.99534 -9.90809 -9.82771 -9.64762 -9.43984 -9.24855 -9.13114 -9.00305 -8.38045 -6.02825 -4.05885 0.07838 0.81464 1.21260 1.35307 2.04537 2.48949 3.16651 3.31207 3.36059 3.37626 3.40705 3.63638 4.14116 4.38954 4.42819 4.46894 4.61977 4.67505 4.71867 4.87328 5.03494 5.10410 5.12399 5.31519 5.33215 5.35552 5.48781 5.58139 5.65861 5.68306 5.73769 5.75726 5.79430 6.07208 6.24528 6.53400 6.65436 6.80957 6.94584 7.21911 7.32783 7.61431 7.63199 7.72996 7.95361 8.01072 8.36646 9.00620 9.58559 11.08399 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.001524 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.435073 B =18373.326381 C =18806.790724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.146 4.146 4 C 0.074 3.926 5 C -0.250 4.250 6 S 0.151 5.849 7 C 0.018 3.982 8 C 0.200 3.800 9 N -0.701 5.701 10 C 0.513 3.487 11 O -0.516 6.516 12 C 0.502 3.498 13 O -0.524 6.524 14 N -0.690 5.690 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 N -0.447 5.447 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.180 0.820 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.416 0.584 38 H 0.412 0.588 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.679 32.444 8.453 35.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 C -0.204 4.204 4 C -0.058 4.058 5 C -0.390 4.390 6 S 0.406 5.594 7 C -0.259 4.259 8 C 0.073 3.927 9 N -0.356 5.356 10 C 0.294 3.706 11 O -0.391 6.391 12 C 0.281 3.719 13 O -0.401 6.401 14 N -0.342 5.342 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 N -0.162 5.162 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.197 0.803 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.252 0.748 38 H 0.248 0.752 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.774 31.994 7.760 34.963 hybrid contribution -0.127 -0.496 0.563 0.761 sum 11.646 31.498 8.323 34.598 Atomic orbital electron populations 1.21831 0.93438 1.02611 1.02201 1.19736 0.96114 0.94972 0.93608 1.21895 1.01359 0.94699 1.02402 1.20295 1.00800 0.88633 0.96120 1.26978 1.10756 1.05278 0.95972 1.84165 1.58887 1.01335 1.14969 1.26799 1.05420 1.01326 0.92398 1.19787 0.88024 0.81709 1.03154 1.45683 1.13124 1.08092 1.68727 1.20362 0.89473 0.82590 0.78149 1.90781 1.27250 1.71052 1.49973 1.19876 0.88422 0.83762 0.79796 1.90772 1.26993 1.71274 1.51074 1.46061 1.14677 1.07399 1.66016 1.21864 0.86599 0.91855 1.00531 1.21932 1.01821 0.91139 1.01193 1.19035 0.91625 0.93788 0.96910 1.21201 0.95214 0.93350 1.46384 0.92555 1.25022 0.94945 0.99032 0.95412 1.69962 1.01923 1.34220 1.47174 0.86573 0.78519 0.84881 0.77901 1.20651 1.21213 1.19863 1.66101 1.12063 1.12046 1.26028 0.92470 0.91710 0.92108 0.89201 0.91607 0.92313 0.92331 0.80290 0.88482 0.87745 0.74787 0.75248 0.91040 0.91026 0.92395 0.92389 0.96187 0.96175 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 2 C -0.02 -0.14 3.33 -91.77 -0.31 -0.45 16 3 C -0.15 -0.61 8.70 37.15 0.32 -0.29 16 4 C 0.07 0.58 5.72 -84.22 -0.48 0.10 16 5 C -0.25 -1.59 10.36 29.12 0.30 -1.29 16 6 S 0.15 0.99 23.18 -107.50 -2.49 -1.50 16 7 C 0.02 0.15 6.76 -13.45 -0.09 0.06 16 8 C 0.20 1.69 6.25 -5.19 -0.03 1.66 16 9 N -0.70 -7.19 5.54 -61.91 -0.34 -7.54 16 10 C 0.51 6.55 7.89 -11.59 -0.09 6.45 16 11 O -0.52 -7.34 16.48 5.49 0.09 -7.25 16 12 C 0.50 7.39 7.89 -11.59 -0.09 7.30 16 13 O -0.52 -8.86 16.48 5.50 0.09 -8.77 16 14 N -0.69 -10.17 5.55 -60.73 -0.34 -10.51 16 15 C 0.11 1.93 5.67 -4.04 -0.02 1.90 16 16 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 22 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 N -0.45 -4.31 10.53 -8.05 -0.08 -4.40 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.20 6.94 -51.93 -0.36 -0.16 16 34 H 0.18 0.71 6.99 -52.49 -0.37 0.35 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.42 4.17 7.94 -40.82 -0.32 3.84 16 38 H 0.41 5.49 7.94 -40.82 -0.32 5.17 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -32.58 398.30 -9.03 -41.62 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.84 Total: 2.15 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.84 Total: -0.38 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.03 Total: -48.31 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.18 Total: -16.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.58 -9.03 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286733821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.567 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.81 seconds