Wall clock time and date at job start Tue Mar 31 2020 23:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09004 * 109.47057 * 55.00109 * 5 4 2 7 7 N 1.46498 * 109.47321 * 295.00158 * 5 4 2 8 8 C 1.34772 * 120.00078 * 84.99937 * 7 5 4 9 9 O 1.21284 * 120.00118 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00204 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.46959 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46959 * 180.02562 * 11 10 8 13 13 H 1.08010 * 119.99804 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00302 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00290 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99771 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47067 * 90.00237 * 16 14 12 18 18 H 1.48497 * 109.47098 * 210.00201 * 16 14 12 19 19 H 1.48498 * 109.47323 * 330.00057 * 16 14 12 20 20 C 1.50705 * 109.47541 * 174.99649 * 5 4 2 21 21 O 1.21286 * 119.99548 * 119.99533 * 20 5 4 22 22 N 1.34770 * 120.00025 * 300.00963 * 20 5 4 23 23 C 1.39005 * 119.99696 * 179.97438 * 22 20 5 24 24 N 1.29620 * 124.94964 * 359.69234 * 23 22 20 25 25 C 1.31984 * 116.92298 * 179.81621 * 24 23 22 26 26 C 1.33447 * 114.56604 * 0.47203 * 25 24 23 27 27 S 1.70977 * 124.94262 * 179.97438 * 23 22 20 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 33 33 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 35 35 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 36 36 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 37 37 H 0.96995 * 119.99888 * 264.99605 * 7 5 4 38 38 H 1.09000 * 109.46970 * 299.99561 * 10 8 7 39 39 H 1.08994 * 109.46799 * 59.99771 * 10 8 7 40 40 H 1.09000 * 109.47136 * 299.99722 * 11 10 8 41 41 H 1.08994 * 109.47338 * 60.00363 * 11 10 8 42 42 H 0.96998 * 120.00267 * 179.97438 * 15 14 12 43 43 H 0.96997 * 120.00331 * 359.97438 * 22 20 5 44 44 H 1.08003 * 122.71773 * 180.22724 * 25 24 23 45 45 H 1.08003 * 125.97005 * 179.72386 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5562 -2.2706 -1.0528 7 7 2.3147 -2.8421 -0.0628 8 6 1.7815 -2.7780 1.1733 9 8 0.7393 -2.1845 1.3542 10 6 2.4807 -3.4427 2.3310 11 6 1.6721 -3.2205 3.6108 12 6 2.3717 -3.8847 4.7686 13 1 3.3000 -4.4129 4.6076 14 6 1.8263 -3.8191 6.0332 15 7 2.4365 -4.3991 7.0435 16 14 0.2205 -2.9061 6.3115 17 1 -0.9182 -3.8436 6.1389 18 1 0.1995 -2.3499 7.6882 19 1 0.1036 -1.7991 5.3286 20 6 2.0292 -2.8783 -2.4724 21 8 2.8016 -3.8131 -2.4499 22 7 1.5233 -2.4501 -3.6459 23 6 1.8872 -3.0798 -4.8306 24 7 2.7068 -4.0800 -4.9185 25 6 2.9375 -4.5592 -6.1265 26 6 2.2891 -3.9277 -7.1070 27 16 1.3238 -2.6431 -6.3847 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6053 -0.2617 -2.1370 36 1 3.1263 -0.6443 -1.2952 37 1 3.1483 -3.3164 -0.2074 38 1 2.5683 -4.5118 2.1372 39 1 3.4749 -3.0124 2.4504 40 1 1.5849 -2.1514 3.8044 41 1 0.6777 -3.6505 3.4916 42 1 2.0530 -4.3526 7.9332 43 1 0.9054 -1.7027 -3.6639 44 1 3.6006 -5.3924 -6.3072 45 1 2.3463 -4.1628 -8.1596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292017301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:00 Heat of formation + Delta-G solvation = -26.838981 kcal Electronic energy + Delta-G solvation = -27264.590230 eV Core-core repulsion = 23409.269489 eV Total energy + Delta-G solvation = -3855.320740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.18532 -39.93483 -38.87697 -36.51825 -35.43388 -34.00863 -33.46148 -31.39160 -30.42390 -29.26397 -27.07674 -26.13085 -25.96561 -24.30891 -22.40187 -21.14530 -20.09900 -19.90373 -19.73477 -19.33269 -17.61020 -16.95356 -16.71416 -16.43967 -15.88524 -15.76719 -15.59532 -15.17052 -14.61451 -14.38947 -14.24616 -13.99909 -13.72127 -13.64337 -13.34779 -13.04748 -12.55222 -12.40400 -12.35179 -12.13906 -11.96659 -11.76894 -11.40918 -11.32810 -11.11283 -10.97045 -10.76400 -10.55614 -10.39726 -10.12793 -10.02554 -9.77545 -9.73919 -9.67476 -9.23182 -9.15865 -8.96743 -8.72231 -8.49661 -6.01463 -4.00178 0.32286 0.53880 1.23722 2.07692 2.31937 2.68404 3.05413 3.33894 3.38056 3.44692 3.54203 3.83328 4.40246 4.51310 4.63860 4.77025 4.84833 4.89089 5.04634 5.11347 5.33831 5.34726 5.38050 5.42706 5.52218 5.63109 5.71157 5.74783 5.83096 5.96084 6.03149 6.09694 6.11987 6.24536 6.36246 6.47683 6.55314 6.61552 6.70982 7.36273 7.37293 7.44200 7.66525 7.72367 7.80526 8.50527 8.61071 9.02195 9.61247 11.11478 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002516 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.239559 B =11123.940066 C =12167.338940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.121 4.121 5 C 0.132 3.868 6 H 0.121 0.879 7 N -0.724 5.724 8 C 0.515 3.485 9 O -0.528 6.528 10 C -0.122 4.122 11 C 0.004 3.996 12 C -0.525 4.525 13 H 0.072 0.928 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.261 1.261 20 C 0.507 3.493 21 O -0.459 6.459 22 N -0.634 5.634 23 C 0.274 3.726 24 N -0.477 5.477 25 C 0.070 3.930 26 C -0.277 4.277 27 S 0.118 5.882 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.024 0.976 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.424 0.576 44 H 0.180 0.820 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 8.542 -30.927 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.160 4.160 5 C 0.022 3.978 6 H 0.138 0.862 7 N -0.380 5.380 8 C 0.304 3.696 9 O -0.404 6.404 10 C -0.161 4.161 11 C -0.034 4.034 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.543 5.543 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.185 1.185 20 C 0.290 3.710 21 O -0.326 6.326 22 N -0.286 5.286 23 C -0.094 4.094 24 N -0.199 5.199 25 C -0.081 4.081 26 C -0.417 4.417 27 S 0.367 5.633 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.262 0.738 44 H 0.197 0.803 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.935 8.812 -30.338 31.728 hybrid contribution -0.119 -0.210 -0.132 0.275 sum -3.054 8.602 -30.470 31.808 Atomic orbital electron populations 1.21860 0.94626 1.02951 1.00324 1.21176 0.96797 0.95387 0.98055 1.21845 1.00628 0.96340 1.01513 1.22093 1.02023 0.92256 0.99598 1.20823 1.00695 0.92548 0.83692 0.86180 1.46003 1.28003 1.57472 1.06528 1.21547 0.85444 0.79229 0.83381 1.90651 1.23339 1.42200 1.84214 1.21681 1.00673 1.00773 0.93015 1.19354 0.95326 0.97673 0.91017 1.21125 1.09547 1.34281 0.91308 0.90945 1.24978 0.97292 0.95016 0.96007 1.69913 1.39689 1.44462 1.00189 0.86788 0.84213 0.81132 0.77342 1.20320 1.21539 1.18496 1.21237 0.80976 0.84264 0.84528 1.90841 1.30823 1.25487 1.85465 1.43142 1.47623 1.34975 1.02879 1.23801 0.98035 0.95817 0.91790 1.66564 1.16802 1.10895 1.25619 1.21725 1.00321 1.00895 0.85112 1.26851 1.07092 1.02638 1.05131 1.83995 1.46645 1.34431 0.98260 0.94331 0.90781 0.92879 0.89429 0.92516 0.93050 0.93206 0.91229 0.90927 0.75441 0.89468 0.89521 0.95794 0.96272 0.92743 0.73774 0.80265 0.80199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.04 37.16 0.30 -1.36 16 2 C -0.10 -1.12 2.38 -90.62 -0.22 -1.33 16 3 C -0.15 -1.48 9.19 37.16 0.34 -1.14 16 4 C -0.12 -1.13 4.30 -26.74 -0.12 -1.24 16 5 C 0.13 1.45 2.58 -69.08 -0.18 1.27 16 6 H 0.12 1.34 5.92 -51.93 -0.31 1.03 16 7 N -0.72 -9.71 4.90 -54.93 -0.27 -9.98 16 8 C 0.51 8.66 6.39 -10.99 -0.07 8.59 16 9 O -0.53 -9.92 10.94 5.55 0.06 -9.86 16 10 C -0.12 -2.32 5.64 -27.88 -0.16 -2.47 16 11 C 0.00 0.10 3.33 -27.88 -0.09 0.01 16 12 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 13 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 16 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 20 C 0.51 5.78 7.18 -10.99 -0.08 5.70 16 21 O -0.46 -7.00 14.47 5.55 0.08 -6.92 16 22 N -0.63 -5.42 5.26 -13.07 -0.07 -5.49 16 23 C 0.27 2.70 8.02 -87.35 -0.70 2.00 16 24 N -0.48 -5.82 8.65 -15.12 -0.13 -5.95 16 25 C 0.07 0.62 11.34 -19.16 -0.22 0.41 16 26 C -0.28 -1.80 11.35 29.06 0.33 -1.47 16 27 S 0.12 0.76 23.22 -107.50 -2.50 -1.74 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.98 4.76 -51.93 -0.25 0.74 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.32 5.19 -51.93 -0.27 1.05 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.45 7.43 -51.93 -0.39 0.07 16 36 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.41 5.26 7.79 -40.82 -0.32 4.94 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 41 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.42 2.05 8.18 -40.82 -0.33 1.71 16 44 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 45 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -36.16 376.00 -8.78 -44.93 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.44 Total: 3.32 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.29 Total: -4.41 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.30 Total: -48.74 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.14 Total: -16.77 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.50 Total: -1.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.16 -8.78 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292017301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.096 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds