Wall clock time and date at job start Tue Mar 31 2020 23:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09004 * 109.47057 * 55.00109 * 5 4 2 7 7 N 1.46498 * 109.47321 * 295.00158 * 5 4 2 8 8 C 1.34772 * 120.00078 * 84.99937 * 7 5 4 9 9 O 1.21284 * 120.00118 * 359.97438 * 8 7 5 10 10 C 1.50703 * 120.00204 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.46959 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46959 * 180.02562 * 11 10 8 13 13 H 1.08010 * 119.99804 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00302 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00290 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99771 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47067 * 90.00237 * 16 14 12 18 18 H 1.48497 * 109.47098 * 210.00201 * 16 14 12 19 19 H 1.48498 * 109.47323 * 330.00057 * 16 14 12 20 20 C 1.50705 * 109.47541 * 174.99649 * 5 4 2 21 21 O 1.21286 * 119.99548 * 119.99533 * 20 5 4 22 22 N 1.34770 * 120.00025 * 300.00963 * 20 5 4 23 23 C 1.39005 * 119.99696 * 179.97438 * 22 20 5 24 24 N 1.29620 * 124.94964 * 359.69234 * 23 22 20 25 25 C 1.31984 * 116.92298 * 179.81621 * 24 23 22 26 26 C 1.33447 * 114.56604 * 0.47203 * 25 24 23 27 27 S 1.70977 * 124.94262 * 179.97438 * 23 22 20 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 32 32 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 33 33 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 35 35 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 36 36 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 37 37 H 0.96995 * 119.99888 * 264.99605 * 7 5 4 38 38 H 1.09000 * 109.46970 * 299.99561 * 10 8 7 39 39 H 1.08994 * 109.46799 * 59.99771 * 10 8 7 40 40 H 1.09000 * 109.47136 * 299.99722 * 11 10 8 41 41 H 1.08994 * 109.47338 * 60.00363 * 11 10 8 42 42 H 0.96998 * 120.00267 * 179.97438 * 15 14 12 43 43 H 0.96997 * 120.00331 * 359.97438 * 22 20 5 44 44 H 1.08003 * 122.71773 * 180.22724 * 25 24 23 45 45 H 1.08003 * 125.97005 * 179.72386 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.5562 -2.2706 -1.0528 7 7 2.3147 -2.8421 -0.0628 8 6 1.7815 -2.7780 1.1733 9 8 0.7393 -2.1845 1.3542 10 6 2.4807 -3.4427 2.3310 11 6 1.6721 -3.2205 3.6108 12 6 2.3717 -3.8847 4.7686 13 1 3.3000 -4.4129 4.6076 14 6 1.8263 -3.8191 6.0332 15 7 2.4365 -4.3991 7.0435 16 14 0.2205 -2.9061 6.3115 17 1 -0.9182 -3.8436 6.1389 18 1 0.1995 -2.3499 7.6882 19 1 0.1036 -1.7991 5.3286 20 6 2.0292 -2.8783 -2.4724 21 8 2.8016 -3.8131 -2.4499 22 7 1.5233 -2.4501 -3.6459 23 6 1.8872 -3.0798 -4.8306 24 7 2.7068 -4.0800 -4.9185 25 6 2.9375 -4.5592 -6.1265 26 6 2.2891 -3.9277 -7.1070 27 16 1.3238 -2.6431 -6.3847 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6053 -0.2617 -2.1370 36 1 3.1263 -0.6443 -1.2952 37 1 3.1483 -3.3164 -0.2074 38 1 2.5683 -4.5118 2.1372 39 1 3.4749 -3.0124 2.4504 40 1 1.5849 -2.1514 3.8044 41 1 0.6777 -3.6505 3.4916 42 1 2.0530 -4.3526 7.9332 43 1 0.9054 -1.7027 -3.6639 44 1 3.6006 -5.3924 -6.3072 45 1 2.3463 -4.1628 -8.1596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292017301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:59 Heat of formation + Delta-G solvation = -52.404284 kcal Electronic energy + Delta-G solvation = -27265.698824 eV Core-core repulsion = 23409.269489 eV Total energy + Delta-G solvation = -3856.429335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06059 -40.89930 -39.82288 -37.51674 -36.22880 -35.50010 -35.09498 -33.30128 -31.36504 -30.08759 -28.00907 -27.83856 -26.69983 -25.21230 -23.49918 -22.60167 -21.23630 -20.91118 -20.42706 -20.23361 -19.22434 -18.16724 -17.73095 -17.38248 -17.03320 -16.81003 -16.51291 -16.21372 -15.81771 -15.75433 -15.26615 -15.17519 -14.85416 -14.60727 -14.57103 -14.23443 -14.17697 -13.59136 -13.37814 -13.28731 -12.95527 -12.88824 -12.60010 -12.48725 -12.09406 -12.05022 -12.01454 -11.96176 -11.75832 -11.63879 -11.41913 -11.38365 -11.22442 -10.77324 -10.65071 -10.40883 -10.29890 -10.07013 -9.32741 -8.30405 -6.33782 -0.28792 -0.04147 0.69258 1.27812 1.34892 1.36146 1.51217 1.56779 1.74667 2.02104 2.27260 2.35942 3.05341 3.07080 3.72293 3.79512 3.92426 3.99340 4.10356 4.27363 4.41386 4.45717 4.48077 4.54275 4.56677 4.68135 4.81216 4.83756 4.88128 4.91649 4.99732 5.11189 5.15380 5.21201 5.32025 5.39474 5.44524 5.47612 5.56079 5.62916 5.67142 5.86288 6.24660 6.50832 6.65573 6.73098 7.02056 7.29332 7.31283 8.85643 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.002516 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.239559 B =11123.940066 C =12167.338940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.112 4.112 5 C 0.135 3.865 6 H 0.123 0.877 7 N -0.713 5.713 8 C 0.523 3.477 9 O -0.548 6.548 10 C -0.119 4.119 11 C 0.012 3.988 12 C -0.531 4.531 13 H 0.044 0.956 14 C 0.010 3.990 15 N -0.947 5.947 16 Si 0.943 3.057 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.255 1.255 20 C 0.514 3.486 21 O -0.505 6.505 22 N -0.619 5.619 23 C 0.237 3.763 24 N -0.525 5.525 25 C 0.039 3.961 26 C -0.262 4.262 27 S 0.188 5.812 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.412 0.588 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.267 0.733 43 H 0.441 0.559 44 H 0.190 0.810 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 10.455 -34.457 36.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.200 4.200 4 C -0.151 4.151 5 C 0.026 3.974 6 H 0.141 0.859 7 N -0.368 5.368 8 C 0.311 3.689 9 O -0.426 6.426 10 C -0.159 4.159 11 C -0.026 4.026 12 C -0.569 4.569 13 H 0.062 0.938 14 C -0.187 4.187 15 N -0.587 5.587 16 Si 0.768 3.232 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.179 1.179 20 C 0.298 3.702 21 O -0.375 6.375 22 N -0.273 5.273 23 C -0.130 4.130 24 N -0.248 5.248 25 C -0.111 4.111 26 C -0.402 4.402 27 S 0.437 5.563 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.249 0.751 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.283 0.717 44 H 0.206 0.794 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.426 10.756 -33.932 35.870 hybrid contribution 0.389 -0.836 0.799 1.220 sum -4.037 9.920 -33.133 34.821 Atomic orbital electron populations 1.21807 0.94682 1.01997 1.00877 1.21117 0.96743 0.96228 0.97507 1.21807 1.00707 0.95304 1.02139 1.22060 1.02282 0.90660 1.00094 1.20967 1.00457 0.93381 0.82613 0.85929 1.45771 1.27869 1.56874 1.06256 1.20888 0.85010 0.79058 0.83903 1.90654 1.24126 1.43172 1.84662 1.21487 1.00578 1.01663 0.92175 1.19169 0.95167 0.96321 0.91971 1.21467 1.08750 1.33765 0.92925 0.93812 1.25870 1.00961 0.96036 0.95860 1.70041 1.41642 1.46214 1.00831 0.85752 0.79867 0.80022 0.77603 1.19469 1.20601 1.17867 1.21146 0.80338 0.83533 0.85231 1.90830 1.33039 1.27468 1.86163 1.42878 1.47311 1.35099 1.02022 1.24045 0.99164 0.96518 0.93303 1.66509 1.18141 1.12276 1.27854 1.21939 1.02007 1.02237 0.84951 1.27355 1.05103 1.01473 1.06300 1.83732 1.44764 1.32893 0.94883 0.91036 0.92443 0.94994 0.93234 0.93733 0.92916 0.90729 0.87308 0.90851 0.75063 0.88980 0.88587 0.96576 0.96992 0.92435 0.71706 0.79369 0.77056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.04 71.98 0.58 -2.43 16 2 C -0.10 -2.13 2.38 -10.79 -0.03 -2.15 16 3 C -0.14 -2.60 9.19 71.98 0.66 -1.94 16 4 C -0.11 -1.83 4.30 30.59 0.13 -1.70 16 5 C 0.13 2.78 2.58 44.24 0.11 2.89 16 6 H 0.12 2.55 5.92 -2.39 -0.01 2.54 16 7 N -0.71 -18.94 4.90 -446.10 -2.19 -21.13 16 8 C 0.52 17.67 6.39 87.66 0.56 18.23 16 9 O -0.55 -20.64 10.94 -3.04 -0.03 -20.67 16 10 C -0.12 -4.62 5.64 29.85 0.17 -4.45 16 11 C 0.01 0.58 3.33 29.85 0.10 0.68 16 12 C -0.53 -31.13 9.66 25.60 0.25 -30.88 16 13 H 0.04 2.74 7.99 -2.91 -0.02 2.72 16 14 C 0.01 0.60 5.47 84.65 0.46 1.06 16 15 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 16 Si 0.94 46.77 27.47 68.60 1.88 48.65 16 17 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.25 -12.29 6.54 99.48 0.65 -11.63 16 20 C 0.51 11.17 7.18 87.66 0.63 11.80 16 21 O -0.50 -15.44 14.47 -3.05 -0.04 -15.48 16 22 N -0.62 -9.35 5.26 -313.64 -1.65 -11.00 16 23 C 0.24 4.25 8.02 179.20 1.44 5.69 16 24 N -0.53 -12.49 8.65 -201.74 -1.74 -14.23 16 25 C 0.04 0.64 11.34 83.58 0.95 1.59 16 26 C -0.26 -2.64 11.35 66.73 0.76 -1.88 16 27 S 0.19 1.79 23.22 -56.49 -1.31 0.48 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.46 4.76 -2.39 -0.01 1.45 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 1.48 5.19 -2.39 -0.01 1.47 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 0.94 7.43 -2.39 -0.02 0.92 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.41 10.64 7.79 -92.71 -0.72 9.91 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.02 0.81 7.16 -2.39 -0.02 0.79 16 41 H 0.01 0.59 7.53 -2.39 -0.02 0.58 16 42 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.44 2.86 8.18 -92.71 -0.76 2.10 16 44 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.21 0.62 8.06 -2.91 -0.02 0.60 16 Total: -1.00 -81.59 376.00 1.48 -80.11 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.50 Total: 16.69 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 6.77 Total: -3.49 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -5.28 Total: -106.29 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.08 Total: -36.15 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.65 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.31 Total: 0.48 kcal Total: -81.59 1.48 -80.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292017301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.710 kcal (2) G-P(sol) polarization free energy of solvation -81.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds