Wall clock time and date at job start Wed Apr 1 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46626 * 110.99863 * 2 1 4 4 C 1.53495 * 109.21423 * 178.63273 * 3 2 1 5 5 N 1.47348 * 107.31077 * 298.36855 * 4 3 2 6 6 S 1.65607 * 121.28178 * 221.13658 * 5 4 3 7 7 O 1.42100 * 104.27381 * 18.50209 * 6 5 4 8 8 O 1.42099 * 104.27542 * 146.35828 * 6 5 4 9 9 C 1.81397 * 104.45199 * 262.43295 * 6 5 4 10 10 C 1.52995 * 109.47185 * 179.97438 * 9 6 5 11 11 C 1.52992 * 109.47304 * 299.99807 * 10 9 6 12 12 C 1.53000 * 109.47017 * 59.99854 * 10 9 6 13 13 C 1.50697 * 109.47094 * 179.97438 * 10 9 6 14 14 H 1.08004 * 119.99920 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00081 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00272 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00190 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47024 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46834 * 119.99779 * 17 15 13 20 20 H 1.48496 * 109.47162 * 240.00089 * 17 15 13 21 21 C 1.40354 * 117.44407 * 41.16142 * 5 4 3 22 22 C 1.38344 * 120.29511 * 168.37809 * 21 5 4 23 23 N 1.32122 * 120.47529 * 179.71656 * 22 21 5 24 24 C 1.31934 * 121.85146 * 359.97438 * 23 22 21 25 25 C 1.38036 * 121.13609 * 0.12415 * 24 23 22 26 26 C 1.38894 * 111.00519 * 126.53469 * 2 1 3 27 27 H 1.09004 * 109.46480 * 289.51076 * 1 2 3 28 28 H 1.08995 * 109.47408 * 49.50816 * 1 2 3 29 29 H 1.08996 * 109.46915 * 169.51774 * 1 2 3 30 30 H 1.08994 * 109.51605 * 58.71226 * 3 2 1 31 31 H 1.08996 * 109.55588 * 298.57560 * 3 2 1 32 32 H 1.09000 * 109.88637 * 178.91825 * 4 3 2 33 33 H 1.09000 * 109.89184 * 57.82154 * 4 3 2 34 34 H 1.09005 * 109.46607 * 299.99839 * 9 6 5 35 35 H 1.09003 * 109.47068 * 59.99279 * 9 6 5 36 36 H 1.09003 * 109.47397 * 59.99666 * 11 10 9 37 37 H 1.08997 * 109.47488 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.47060 * 299.99923 * 11 10 9 39 39 H 1.09002 * 109.47451 * 60.00107 * 12 10 9 40 40 H 1.09007 * 109.47161 * 179.97438 * 12 10 9 41 41 H 1.09001 * 109.47166 * 300.00034 * 12 10 9 42 42 H 0.96995 * 120.00284 * 180.02562 * 16 15 13 43 43 H 1.07998 * 119.76245 * 359.74234 * 22 21 5 44 44 H 1.08000 * 119.42584 * 180.10551 * 24 23 22 45 45 H 1.08003 * 120.47470 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9944 1.3689 0.0000 4 6 3.5282 1.3212 0.0346 5 7 3.9179 0.6502 1.2872 6 16 5.1889 1.1978 2.1967 7 8 5.3909 2.5313 1.7494 8 8 4.8037 0.9251 3.5371 9 6 6.5824 0.1444 1.7079 10 6 7.8320 0.5572 2.4883 11 6 8.1653 2.0185 2.1817 12 6 7.5729 0.3969 3.9877 13 6 8.9895 -0.3184 2.0827 14 1 8.8482 -1.0916 1.3420 15 6 10.2290 -0.1323 2.6572 16 7 10.4011 0.8088 3.5595 17 14 11.6638 -1.2180 2.1549 18 1 11.2115 -2.1933 1.1304 19 1 12.7484 -0.3752 1.5906 20 1 12.1719 -1.9482 3.3439 21 6 3.1709 -0.4714 1.6796 22 6 3.6212 -1.2867 2.7026 23 7 2.9181 -2.3402 3.0786 24 6 1.7732 -2.6546 2.5034 25 6 1.2582 -1.8920 1.4745 26 6 1.9669 -0.7719 1.0418 27 1 -0.3632 0.3432 0.9687 28 1 -0.3634 0.6673 -0.7815 29 1 -0.3633 -1.0105 -0.1870 30 1 1.6268 1.9000 0.8779 31 1 1.6665 1.8855 -0.9020 32 1 3.9312 2.3339 0.0155 33 1 3.9011 0.7567 -0.8201 34 1 6.3448 -0.8968 1.9260 35 1 6.7672 0.2589 0.6398 36 1 7.3279 2.6515 2.4753 37 1 9.0558 2.3124 2.7373 38 1 8.3499 2.1326 1.1135 39 1 7.3355 -0.6442 4.2062 40 1 8.4633 0.6906 4.5437 41 1 6.7355 1.0299 4.2814 42 1 11.2732 0.9400 3.9634 43 1 4.5539 -1.0602 3.1976 44 1 1.2297 -3.5238 2.8432 45 1 0.3197 -2.1589 1.0114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296253510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:37 Heat of formation + Delta-G solvation = -29.509842 kcal Electronic energy + Delta-G solvation = -29185.006096 eV Core-core repulsion = 25329.569539 eV Total energy + Delta-G solvation = -3855.436557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.44 seconds Orbital eigenvalues (eV) -42.12001 -39.08625 -38.35395 -38.22464 -37.27712 -36.86529 -33.69023 -32.65472 -31.60557 -29.68636 -28.42204 -27.75175 -27.29265 -26.50710 -25.47071 -23.97473 -21.73601 -21.38907 -20.38185 -19.21641 -18.82555 -18.05239 -17.94017 -17.23814 -17.05209 -16.74698 -16.59334 -15.91316 -15.56723 -15.47773 -15.13875 -15.06346 -14.94620 -14.81604 -14.49706 -14.38684 -14.03014 -13.87267 -13.40685 -13.29422 -13.11196 -12.97212 -12.94203 -12.84740 -12.75793 -12.60973 -12.30441 -12.20801 -12.15381 -12.01423 -11.98939 -11.63476 -11.45972 -11.24186 -10.67099 -10.55303 -10.44976 -9.66056 -8.89473 -8.06362 -6.24973 -0.97943 0.09080 0.25861 1.36421 1.41872 1.45045 1.54715 2.41893 2.45219 2.58808 2.86918 2.93044 3.16688 3.20700 3.44233 3.65782 3.71537 3.88738 3.92654 4.06689 4.11913 4.17676 4.37892 4.46278 4.51094 4.53497 4.60621 4.63647 4.69584 4.76601 4.79336 4.82323 4.88109 4.90594 4.99786 5.00965 5.19753 5.32108 5.45539 5.57636 5.61675 5.79807 5.92689 5.99431 6.05811 6.29471 6.78908 7.03136 7.43501 8.93973 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.003821 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.974587 B = 7326.846273 C = 7920.758886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.491 5.491 3 C 0.045 3.955 4 C 0.089 3.911 5 N -0.942 5.942 6 S 2.602 3.398 7 O -0.966 6.966 8 O -0.973 6.973 9 C -0.580 4.580 10 C 0.071 3.929 11 C -0.159 4.159 12 C -0.161 4.161 13 C -0.518 4.518 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 0.955 3.045 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.072 3.928 22 C 0.053 3.947 23 N -0.502 5.502 24 C 0.089 3.911 25 C -0.179 4.179 26 C 0.126 3.874 27 H 0.041 0.959 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.145 0.855 44 H 0.193 0.807 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.080 -2.072 -10.379 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.205 5.205 3 C -0.082 4.082 4 C -0.034 4.034 5 N -0.768 5.768 6 S 2.703 3.297 7 O -0.957 6.957 8 O -0.964 6.964 9 C -0.713 4.713 10 C 0.069 3.931 11 C -0.217 4.217 12 C -0.218 4.218 13 C -0.557 4.557 14 H 0.079 0.921 15 C -0.179 4.179 16 N -0.545 5.545 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.029 4.029 22 C -0.106 4.106 23 N -0.213 5.213 24 C -0.069 4.069 25 C -0.202 4.202 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.162 0.838 44 H 0.209 0.791 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.537 -1.809 -9.487 23.604 hybrid contribution 1.169 -0.010 -0.193 1.184 sum -20.369 -1.819 -9.680 22.625 Atomic orbital electron populations 1.22741 0.81546 1.05543 1.02625 1.58050 1.11247 1.12976 1.38204 1.22583 0.93453 0.87444 1.04761 1.22398 0.96648 0.99950 0.84440 1.56035 1.45586 1.37714 1.37431 1.05422 0.75068 0.75503 0.73703 1.93507 1.85654 1.34290 1.82207 1.93538 1.81443 1.85886 1.35486 1.30495 1.14244 1.14657 1.11887 1.17950 0.90004 0.94098 0.91051 1.22202 1.02184 0.96353 1.00947 1.22224 1.01007 0.99674 0.98940 1.21259 0.93774 1.17103 1.23548 0.92078 1.25649 1.00961 0.96472 0.94856 1.69930 1.23929 1.32737 1.27869 0.85555 0.79357 0.78916 0.78111 1.19158 1.20626 1.20894 1.18381 0.95049 0.90313 0.99176 1.22684 1.01044 0.91603 0.95282 1.67749 1.08518 1.15881 1.29114 1.23223 0.91294 0.99760 0.92648 1.22294 1.03036 0.95114 0.99731 1.18883 0.92301 0.96684 0.90678 0.93993 0.87829 0.88319 0.93233 0.83910 0.86270 0.87897 0.85261 0.84105 0.94946 0.90720 0.93709 0.94254 0.90651 0.94941 0.92779 0.83830 0.79060 0.80070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.80 127.69 1.12 1.31 16 2 N -0.49 -8.33 4.80 -719.49 -3.46 -11.79 16 3 C 0.04 0.73 5.59 86.52 0.48 1.22 16 4 C 0.09 1.95 6.70 86.38 0.58 2.53 16 5 N -0.94 -28.39 3.25 -336.10 -1.09 -29.49 16 6 S 2.60 98.82 3.90 -56.49 -0.22 98.60 16 7 O -0.97 -38.92 14.12 -127.65 -1.80 -40.73 16 8 O -0.97 -42.23 12.70 -127.65 -1.62 -43.85 16 9 C -0.58 -23.03 5.00 71.98 0.36 -22.67 16 10 C 0.07 3.48 0.52 -52.93 -0.03 3.45 16 11 C -0.16 -7.84 7.78 71.98 0.56 -7.28 16 12 C -0.16 -8.13 7.77 71.98 0.56 -7.57 16 13 C -0.52 -27.29 8.01 25.60 0.21 -27.08 16 14 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 15 C 0.02 1.08 5.15 84.65 0.44 1.52 16 16 N -0.91 -50.16 9.35 21.45 0.20 -49.96 16 17 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.07 2.19 6.25 38.11 0.24 2.43 16 22 C 0.05 1.84 9.74 84.67 0.82 2.67 16 23 N -0.50 -15.97 10.37 -195.65 -2.03 -18.00 16 24 C 0.09 1.97 11.16 84.63 0.94 2.91 16 25 C -0.18 -3.28 9.14 22.51 0.21 -3.08 16 26 C 0.13 2.93 5.86 38.62 0.23 3.16 16 27 H 0.04 0.42 8.12 -2.38 -0.02 0.41 16 28 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 29 H 0.10 0.57 6.51 -2.39 -0.02 0.55 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 2.54 6.83 -2.39 -0.02 2.52 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.13 4.89 7.42 -2.39 -0.02 4.87 16 35 H 0.14 4.94 8.14 -2.39 -0.02 4.92 16 36 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 37 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 38 H 0.04 2.06 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 4.13 6.07 -2.38 -0.01 4.11 16 41 H 0.03 1.56 5.46 -2.39 -0.01 1.55 16 42 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.14 5.58 4.90 -2.91 -0.01 5.57 16 44 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.18 1.73 6.19 -2.91 -0.02 1.72 16 Total: -1.00 -72.19 350.88 -0.26 -72.45 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 1.01 Total: 24.74 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 6.72 Total: -46.49 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -6.38 Total: -109.23 kcal Atomic # 8 Polarization: -81.16 SS G_CDS: -3.42 Total: -84.58 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 98.82 SS G_CDS: -0.22 Total: 98.60 kcal Total: -72.19 -0.26 -72.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296253510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.940 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.44 seconds