Wall clock time and date at job start Wed Apr 1 2020 00:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46520 * 111.00131 * 2 1 4 4 C 1.53508 * 109.17455 * 179.36333 * 3 2 1 5 5 N 1.47324 * 107.15420 * 298.36325 * 4 3 2 6 6 S 1.65604 * 121.23755 * 220.76434 * 5 4 3 7 7 O 1.42101 * 104.27364 * 18.33320 * 6 5 4 8 8 O 1.42095 * 104.27809 * 146.18685 * 6 5 4 9 9 C 1.81395 * 104.45245 * 262.25948 * 6 5 4 10 10 C 1.52998 * 109.47406 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.47071 * 299.99855 * 10 9 6 12 12 C 1.52996 * 109.46986 * 60.00001 * 10 9 6 13 13 C 1.50701 * 109.47061 * 180.02562 * 10 9 6 14 14 H 1.08001 * 120.00157 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99646 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00014 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99904 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47192 * 59.99223 * 17 15 13 19 19 H 1.48492 * 109.47039 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46592 * 299.99655 * 17 15 13 21 21 C 1.40328 * 117.53108 * 40.79203 * 5 4 3 22 22 C 1.38692 * 119.73652 * 168.95351 * 21 5 4 23 23 C 1.38892 * 118.36857 * 179.91077 * 22 21 5 24 24 C 1.38019 * 119.06625 * 359.47733 * 23 22 21 25 25 N 1.31848 * 121.20282 * 0.35713 * 24 23 22 26 26 C 1.32825 * 121.99485 * 0.04833 * 25 24 23 27 27 H 1.08996 * 109.47363 * 289.36483 * 1 2 3 28 28 H 1.08999 * 109.47153 * 49.36961 * 1 2 3 29 29 H 1.09000 * 109.47145 * 169.36575 * 1 2 3 30 30 H 1.09002 * 109.52049 * 59.45909 * 3 2 1 31 31 H 1.08997 * 109.52123 * 299.27460 * 3 2 1 32 32 H 1.09005 * 109.91849 * 178.95400 * 4 3 2 33 33 H 1.09001 * 109.98649 * 57.81910 * 4 3 2 34 34 H 1.09002 * 109.47074 * 300.00022 * 9 6 5 35 35 H 1.09003 * 109.47228 * 59.99435 * 9 6 5 36 36 H 1.09007 * 109.46941 * 60.00026 * 11 10 9 37 37 H 1.09000 * 109.47151 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47096 * 300.00322 * 11 10 9 39 39 H 1.08995 * 109.47237 * 60.00529 * 12 10 9 40 40 H 1.09000 * 109.47076 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47185 * 299.99534 * 12 10 9 42 42 H 0.97003 * 120.00009 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.81752 * 359.66769 * 22 21 5 44 44 H 1.07996 * 120.46725 * 179.75164 * 23 22 21 45 45 H 1.08005 * 119.39627 * 180.38221 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3679 0.0000 4 6 3.5283 1.3190 0.0161 5 7 3.9284 0.6417 1.2617 6 16 5.2149 1.1782 2.1560 7 8 5.4232 2.5099 1.7061 8 8 4.8434 0.9089 3.5008 9 6 6.5932 0.1126 1.6508 10 6 7.8556 0.5143 2.4161 11 6 8.1980 1.9728 2.1053 12 6 7.6130 0.3565 3.9185 13 6 9.0008 -0.3706 1.9959 14 1 8.8438 -1.1426 1.2572 15 6 10.2487 -0.1952 2.5554 16 7 10.4397 0.7446 3.4553 17 14 11.6684 -1.2916 2.0340 18 1 11.9038 -1.1368 0.5760 19 1 12.8936 -0.9017 2.7770 20 1 11.3364 -2.7075 2.3343 21 6 3.1793 -0.4754 1.6621 22 6 3.6440 -1.2829 2.6895 23 6 2.8789 -2.3800 3.0641 24 6 1.6861 -2.6196 2.4123 25 7 1.2682 -1.8319 1.4411 26 6 1.9674 -0.7757 1.0414 27 1 -0.3634 0.3407 0.9695 28 1 -0.3633 0.6692 -0.7799 29 1 -0.3633 -1.0100 -0.1896 30 1 1.6372 1.8950 0.8848 31 1 1.6556 1.8879 -0.8961 32 1 3.9323 2.3312 -0.0024 33 1 3.8922 0.7584 -0.8449 34 1 6.3491 -0.9265 1.8718 35 1 6.7662 0.2253 0.5805 36 1 7.3698 2.6131 2.4089 37 1 9.0971 2.2591 2.6509 38 1 8.3707 2.0852 1.0350 39 1 7.3692 -0.6825 4.1400 40 1 8.5122 0.6431 4.4638 41 1 6.7849 0.9969 4.2221 42 1 11.3176 0.8677 3.8492 43 1 4.5796 -1.0664 3.1835 44 1 3.2105 -3.0338 3.8571 45 1 1.0840 -3.4676 2.7035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296335982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:29 Heat of formation + Delta-G solvation = -4.885184 kcal Electronic energy + Delta-G solvation = -29190.210516 eV Core-core repulsion = 25335.841764 eV Total energy + Delta-G solvation = -3854.368752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 6.22 seconds Orbital eigenvalues (eV) -41.05887 -37.80211 -36.90216 -36.42468 -36.05882 -35.48273 -31.79354 -31.53320 -30.95136 -28.60423 -26.79817 -25.83402 -25.42700 -25.30082 -24.44149 -23.03281 -20.83331 -19.60414 -19.00925 -17.84392 -17.64348 -17.10261 -16.22952 -15.91333 -15.64614 -15.25457 -14.95827 -14.90022 -14.76406 -14.55528 -13.90614 -13.46030 -13.40530 -13.25490 -13.12779 -12.67009 -12.61517 -12.39361 -12.32521 -12.23815 -11.80723 -11.69920 -11.44482 -11.22629 -11.14424 -11.08941 -10.95568 -10.81085 -10.47666 -10.38882 -10.24960 -10.19104 -9.76411 -9.66702 -9.47808 -9.02925 -8.79456 -8.47020 -7.69746 -6.10486 -4.22990 0.47635 1.15297 1.28032 2.67158 3.20306 3.23431 3.29088 3.30863 3.78309 4.08272 4.24069 4.28310 4.32416 4.50517 4.62200 4.85509 4.90324 4.97336 5.10192 5.15542 5.23389 5.26494 5.28657 5.43677 5.47476 5.54069 5.59188 5.72682 5.75708 5.92096 6.05584 6.22898 6.31666 6.49328 6.55684 6.58524 6.67642 6.77642 6.91366 7.01499 7.20216 7.39109 7.60519 7.88135 7.97256 7.99876 8.23512 8.75304 9.42969 10.90905 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003812 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.725396 B = 7343.998542 C = 7929.784501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.482 5.482 3 C 0.048 3.952 4 C 0.102 3.898 5 N -0.946 5.946 6 S 2.580 3.420 7 O -0.950 6.950 8 O -0.948 6.948 9 C -0.575 4.575 10 C 0.083 3.917 11 C -0.164 4.164 12 C -0.165 4.165 13 C -0.504 4.504 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.106 3.894 22 C -0.104 4.104 23 C -0.162 4.162 24 C 0.094 3.906 25 N -0.493 5.493 26 C 0.289 3.711 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.026 0.974 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.097 0.903 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.154 0.846 44 H 0.142 0.858 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.931 -1.872 -5.286 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.199 5.199 3 C -0.080 4.080 4 C -0.022 4.022 5 N -0.769 5.769 6 S 2.682 3.318 7 O -0.940 6.940 8 O -0.939 6.939 9 C -0.709 4.709 10 C 0.081 3.919 11 C -0.222 4.222 12 C -0.223 4.223 13 C -0.543 4.543 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C 0.004 3.996 22 C -0.134 4.134 23 C -0.184 4.184 24 C -0.064 4.064 25 N -0.207 5.207 26 C 0.053 3.947 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.045 0.955 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.116 0.884 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.172 0.828 44 H 0.160 0.840 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.483 -1.275 -5.468 18.362 hybrid contribution 1.666 -0.687 0.300 1.827 sum -15.816 -1.962 -5.169 16.755 Atomic orbital electron populations 1.22268 0.83360 1.04092 1.00735 1.57924 1.10176 1.12560 1.39221 1.22446 0.95123 0.87208 1.03251 1.22037 0.94642 0.99773 0.85755 1.56456 1.45913 1.37455 1.37111 1.06387 0.74883 0.76282 0.74250 1.93542 1.84953 1.33613 1.81913 1.93561 1.81365 1.85749 1.33177 1.30572 1.15012 1.13806 1.11510 1.17972 0.88201 0.94617 0.91143 1.22291 1.03153 0.95792 1.00963 1.22300 1.02179 0.99523 0.98277 1.20871 0.92802 1.16745 1.23912 0.92234 1.24928 0.98585 0.95343 0.94744 1.69780 1.23215 1.31677 1.27441 0.86572 0.81389 0.80819 0.78738 1.20214 1.21121 1.20187 1.17997 0.93768 0.89959 0.97838 1.21705 1.02135 0.93881 0.95636 1.21864 0.96004 0.98253 1.02278 1.22358 0.94628 0.97766 0.91690 1.67382 1.33794 1.04551 1.14983 1.19223 0.90413 0.93896 0.91129 0.94523 0.90963 0.89383 0.92593 0.87522 0.86424 0.89320 0.86076 0.85901 0.95540 0.88424 0.94309 0.94314 0.88398 0.95451 0.92575 0.82834 0.84042 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 9.05 60.06 0.54 0.95 16 2 N -0.48 -5.88 4.79 -180.80 -0.87 -6.74 16 3 C 0.05 0.51 5.58 -3.77 -0.02 0.49 16 4 C 0.10 1.25 6.71 -3.33 -0.02 1.23 16 5 N -0.95 -14.60 3.25 -57.53 -0.19 -14.78 16 6 S 2.58 47.66 3.89 -107.50 -0.42 47.24 16 7 O -0.95 -18.99 14.11 -57.54 -0.81 -19.80 16 8 O -0.95 -19.31 12.65 -57.54 -0.73 -20.04 16 9 C -0.57 -11.03 5.00 37.16 0.19 -10.85 16 10 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 11 C -0.16 -3.92 7.77 37.16 0.29 -3.63 16 12 C -0.17 -3.91 7.78 37.16 0.29 -3.62 16 13 C -0.50 -12.89 8.01 -34.44 -0.28 -13.17 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.88 -23.51 9.35 55.43 0.52 -22.99 16 17 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.11 1.65 6.26 -83.35 -0.52 1.13 16 22 C -0.10 -1.61 8.59 -39.17 -0.34 -1.94 16 23 C -0.16 -2.04 10.12 -39.42 -0.40 -2.44 16 24 C 0.09 1.12 11.15 -17.62 -0.20 0.93 16 25 N -0.49 -6.79 8.98 -12.27 -0.11 -6.90 16 26 C 0.29 4.20 6.68 -154.45 -1.03 3.17 16 27 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 29 H 0.09 0.88 7.69 -51.93 -0.40 0.48 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.11 0.77 8.13 -51.93 -0.42 0.34 16 32 H 0.12 1.35 6.83 -51.93 -0.35 1.00 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.12 2.14 7.41 -51.92 -0.38 1.75 16 35 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16 36 H 0.03 0.59 5.46 -51.92 -0.28 0.31 16 37 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 41 H 0.03 0.61 5.47 -51.93 -0.28 0.33 16 42 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.15 2.50 4.93 -52.49 -0.26 2.24 16 44 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -31.46 353.36 -10.33 -41.79 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.36 Total: 5.94 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -1.67 Total: -24.26 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.65 Total: -51.42 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.54 Total: -39.84 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 47.66 SS G_CDS: -0.42 Total: 47.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.46 -10.33 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296335982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.900 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.22 seconds