Wall clock time and date at job start Wed Apr 1 2020 00:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46520 * 111.00131 * 2 1 4 4 C 1.53508 * 109.17455 * 179.36333 * 3 2 1 5 5 N 1.47324 * 107.15420 * 298.36325 * 4 3 2 6 6 S 1.65604 * 121.23755 * 220.76434 * 5 4 3 7 7 O 1.42101 * 104.27364 * 18.33320 * 6 5 4 8 8 O 1.42095 * 104.27809 * 146.18685 * 6 5 4 9 9 C 1.81395 * 104.45245 * 262.25948 * 6 5 4 10 10 C 1.52998 * 109.47406 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.47071 * 299.99855 * 10 9 6 12 12 C 1.52996 * 109.46986 * 60.00001 * 10 9 6 13 13 C 1.50701 * 109.47061 * 180.02562 * 10 9 6 14 14 H 1.08001 * 120.00157 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99646 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00014 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99904 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47192 * 59.99223 * 17 15 13 19 19 H 1.48492 * 109.47039 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46592 * 299.99655 * 17 15 13 21 21 C 1.40328 * 117.53108 * 40.79203 * 5 4 3 22 22 C 1.38692 * 119.73652 * 168.95351 * 21 5 4 23 23 C 1.38892 * 118.36857 * 179.91077 * 22 21 5 24 24 C 1.38019 * 119.06625 * 359.47733 * 23 22 21 25 25 N 1.31848 * 121.20282 * 0.35713 * 24 23 22 26 26 C 1.32825 * 121.99485 * 0.04833 * 25 24 23 27 27 H 1.08996 * 109.47363 * 289.36483 * 1 2 3 28 28 H 1.08999 * 109.47153 * 49.36961 * 1 2 3 29 29 H 1.09000 * 109.47145 * 169.36575 * 1 2 3 30 30 H 1.09002 * 109.52049 * 59.45909 * 3 2 1 31 31 H 1.08997 * 109.52123 * 299.27460 * 3 2 1 32 32 H 1.09005 * 109.91849 * 178.95400 * 4 3 2 33 33 H 1.09001 * 109.98649 * 57.81910 * 4 3 2 34 34 H 1.09002 * 109.47074 * 300.00022 * 9 6 5 35 35 H 1.09003 * 109.47228 * 59.99435 * 9 6 5 36 36 H 1.09007 * 109.46941 * 60.00026 * 11 10 9 37 37 H 1.09000 * 109.47151 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47096 * 300.00322 * 11 10 9 39 39 H 1.08995 * 109.47237 * 60.00529 * 12 10 9 40 40 H 1.09000 * 109.47076 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47185 * 299.99534 * 12 10 9 42 42 H 0.97003 * 120.00009 * 179.97438 * 16 15 13 43 43 H 1.08000 * 120.81752 * 359.66769 * 22 21 5 44 44 H 1.07996 * 120.46725 * 179.75164 * 23 22 21 45 45 H 1.08005 * 119.39627 * 180.38221 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3679 0.0000 4 6 3.5283 1.3190 0.0161 5 7 3.9284 0.6417 1.2617 6 16 5.2149 1.1782 2.1560 7 8 5.4232 2.5099 1.7061 8 8 4.8434 0.9089 3.5008 9 6 6.5932 0.1126 1.6508 10 6 7.8556 0.5143 2.4161 11 6 8.1980 1.9728 2.1053 12 6 7.6130 0.3565 3.9185 13 6 9.0008 -0.3706 1.9959 14 1 8.8438 -1.1426 1.2572 15 6 10.2487 -0.1952 2.5554 16 7 10.4397 0.7446 3.4553 17 14 11.6684 -1.2916 2.0340 18 1 11.9038 -1.1368 0.5760 19 1 12.8936 -0.9017 2.7770 20 1 11.3364 -2.7075 2.3343 21 6 3.1793 -0.4754 1.6621 22 6 3.6440 -1.2829 2.6895 23 6 2.8789 -2.3800 3.0641 24 6 1.6861 -2.6196 2.4123 25 7 1.2682 -1.8319 1.4411 26 6 1.9674 -0.7757 1.0414 27 1 -0.3634 0.3407 0.9695 28 1 -0.3633 0.6692 -0.7799 29 1 -0.3633 -1.0100 -0.1896 30 1 1.6372 1.8950 0.8848 31 1 1.6556 1.8879 -0.8961 32 1 3.9323 2.3312 -0.0024 33 1 3.8922 0.7584 -0.8449 34 1 6.3491 -0.9265 1.8718 35 1 6.7662 0.2253 0.5805 36 1 7.3698 2.6131 2.4089 37 1 9.0971 2.2591 2.6509 38 1 8.3707 2.0852 1.0350 39 1 7.3692 -0.6825 4.1400 40 1 8.5122 0.6431 4.4638 41 1 6.7849 0.9969 4.2221 42 1 11.3176 0.8677 3.8492 43 1 4.5796 -1.0664 3.1835 44 1 3.2105 -3.0338 3.8571 45 1 1.0840 -3.4676 2.7035 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296335982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:25 Heat of formation + Delta-G solvation = -25.037389 kcal Electronic energy + Delta-G solvation = -29191.084381 eV Core-core repulsion = 25335.841764 eV Total energy + Delta-G solvation = -3855.242617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.04792 -38.86059 -38.31419 -38.20668 -37.26323 -36.87931 -33.69129 -32.58409 -31.89397 -29.57735 -28.41162 -27.74888 -27.28458 -26.31626 -25.39863 -24.08488 -21.81435 -21.37797 -20.31313 -19.09499 -18.83370 -18.08912 -17.98463 -17.22940 -17.03779 -16.66891 -16.58039 -15.93016 -15.89074 -15.46999 -15.10647 -14.86523 -14.81808 -14.52143 -14.37285 -14.32289 -14.01229 -13.83922 -13.42634 -13.18576 -13.09577 -12.94631 -12.91494 -12.84744 -12.70262 -12.60320 -12.45394 -12.27707 -12.20004 -12.10559 -11.93373 -11.62635 -11.40898 -11.18812 -10.72013 -10.49747 -10.43712 -10.02940 -8.69934 -8.05927 -6.24766 -0.96690 0.15246 0.21039 1.37859 1.44708 1.45491 1.52503 2.31894 2.42282 2.60078 2.83943 2.94552 3.17085 3.22165 3.50798 3.62829 3.88442 3.91616 4.00485 4.05713 4.09056 4.19249 4.43031 4.48847 4.50180 4.52372 4.57147 4.69855 4.76051 4.78655 4.79753 4.86930 4.90515 5.00893 5.04054 5.10778 5.31544 5.33289 5.45772 5.52632 5.61601 5.68719 5.93037 6.04194 6.06257 6.29651 6.78866 6.98304 7.43784 8.93841 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003812 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.725396 B = 7343.998542 C = 7929.784501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.487 5.487 3 C 0.049 3.951 4 C 0.089 3.911 5 N -0.943 5.943 6 S 2.603 3.397 7 O -0.969 6.969 8 O -0.972 6.972 9 C -0.579 4.579 10 C 0.072 3.928 11 C -0.160 4.160 12 C -0.160 4.160 13 C -0.519 4.519 14 H 0.062 0.938 15 C 0.022 3.978 16 N -0.906 5.906 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.080 3.920 22 C -0.128 4.128 23 C -0.164 4.164 24 C 0.101 3.899 25 N -0.503 5.503 26 C 0.281 3.719 27 H 0.030 0.970 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.146 0.854 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.138 0.862 44 H 0.168 0.832 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.714 -2.980 -6.718 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.204 5.204 3 C -0.079 4.079 4 C -0.034 4.034 5 N -0.769 5.769 6 S 2.704 3.296 7 O -0.959 6.959 8 O -0.962 6.962 9 C -0.712 4.712 10 C 0.070 3.930 11 C -0.218 4.218 12 C -0.218 4.218 13 C -0.558 4.558 14 H 0.080 0.920 15 C -0.178 4.178 16 N -0.544 5.544 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.021 4.021 22 C -0.158 4.158 23 C -0.185 4.185 24 C -0.058 4.058 25 N -0.217 5.217 26 C 0.045 3.955 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.156 0.844 44 H 0.185 0.815 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -19.262 -2.378 -6.913 20.603 hybrid contribution 2.107 -0.385 0.733 2.264 sum -17.156 -2.763 -6.179 18.443 Atomic orbital electron populations 1.22341 0.81825 1.04615 1.01467 1.58023 1.11441 1.12957 1.37949 1.22599 0.93697 0.86725 1.04860 1.22401 0.96187 0.99980 0.84824 1.56077 1.44848 1.37975 1.37965 1.05431 0.74907 0.75518 0.73781 1.93506 1.85536 1.34632 1.82216 1.93524 1.81705 1.85974 1.35004 1.30492 1.13947 1.14897 1.11885 1.17942 0.89810 0.93994 0.91298 1.22218 1.02268 0.96510 1.00811 1.22216 1.01135 0.99796 0.98643 1.21203 0.93724 1.17049 1.23866 0.92025 1.25634 1.00829 0.96490 0.94874 1.69918 1.23474 1.32815 1.28219 0.85685 0.78652 0.79341 0.78405 1.19750 1.21179 1.19724 1.18166 0.94712 0.90347 0.98891 1.21826 1.02336 0.95377 0.96231 1.22199 0.95896 0.97650 1.02771 1.23017 0.94430 0.97951 0.90385 1.67509 1.33809 1.04703 1.15677 1.19513 0.90104 0.94419 0.91417 0.95160 0.87967 0.89856 0.93250 0.83586 0.85998 0.87838 0.84893 0.84343 0.94991 0.90742 0.93874 0.93889 0.90759 0.94936 0.92781 0.84406 0.81492 0.78699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.05 127.69 1.16 1.87 16 2 N -0.49 -10.73 4.79 -725.93 -3.48 -14.21 16 3 C 0.05 0.91 5.58 86.55 0.48 1.40 16 4 C 0.09 2.03 6.71 86.39 0.58 2.61 16 5 N -0.94 -28.38 3.25 -335.93 -1.09 -29.48 16 6 S 2.60 96.04 3.89 -56.49 -0.22 95.82 16 7 O -0.97 -38.62 14.11 -127.65 -1.80 -40.42 16 8 O -0.97 -40.11 12.65 -127.65 -1.61 -41.73 16 9 C -0.58 -22.13 5.00 71.98 0.36 -21.77 16 10 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 11 C -0.16 -7.77 7.77 71.98 0.56 -7.21 16 12 C -0.16 -7.76 7.78 71.98 0.56 -7.20 16 13 C -0.52 -26.63 8.01 25.60 0.21 -26.43 16 14 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 15 C 0.02 1.13 5.15 84.66 0.44 1.56 16 16 N -0.91 -49.20 9.35 21.45 0.20 -49.00 16 17 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 C 0.08 2.43 6.26 38.18 0.24 2.67 16 22 C -0.13 -3.89 8.59 22.54 0.19 -3.70 16 23 C -0.16 -3.83 10.12 22.37 0.23 -3.61 16 24 C 0.10 2.14 11.15 84.64 0.94 3.09 16 25 N -0.50 -12.79 8.98 -192.75 -1.73 -14.52 16 26 C 0.28 7.72 6.68 132.98 0.89 8.61 16 27 H 0.03 0.54 8.12 -2.39 -0.02 0.52 16 28 H 0.10 1.07 8.06 -2.39 -0.02 1.05 16 29 H 0.08 1.47 7.69 -2.39 -0.02 1.45 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.15 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.12 2.64 6.83 -2.38 -0.02 2.62 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.13 4.69 7.41 -2.39 -0.02 4.67 16 35 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 36 H 0.03 1.47 5.46 -2.38 -0.01 1.46 16 37 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 41 H 0.03 1.49 5.47 -2.38 -0.01 1.48 16 42 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 43 H 0.14 4.56 4.93 -2.91 -0.01 4.54 16 44 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 45 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -68.15 353.36 0.10 -68.06 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 1.00 Total: 26.68 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 6.80 Total: -44.73 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -6.10 Total: -107.20 kcal Atomic # 8 Polarization: -78.73 SS G_CDS: -3.42 Total: -82.15 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 96.04 SS G_CDS: -0.22 Total: 95.82 kcal Total: -68.15 0.10 -68.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296335982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.019 kcal (2) G-P(sol) polarization free energy of solvation -68.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds