Wall clock time and date at job start Wed Apr 1 2020 01:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99866 * 2 1 4 4 N 1.46497 * 109.47081 * 124.99755 * 3 2 1 5 5 C 1.46502 * 119.99914 * 274.48136 * 4 3 2 6 6 C 1.50702 * 109.47270 * 265.01815 * 5 4 3 7 7 H 1.08001 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00286 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00375 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99753 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47168 * 89.99910 * 10 8 6 12 12 H 1.48500 * 109.47178 * 210.00286 * 10 8 6 13 13 H 1.48506 * 109.47176 * 329.99840 * 10 8 6 14 14 C 1.34775 * 119.99945 * 94.48445 * 4 3 2 15 15 O 1.21358 * 119.99854 * 354.61715 * 14 4 3 16 16 C 1.49347 * 119.99794 * 174.62020 * 14 4 3 17 17 O 1.21373 * 120.00592 * 354.43426 * 16 14 4 18 18 N 1.34780 * 119.99629 * 174.44055 * 16 14 4 19 19 C 1.39686 * 119.99787 * 184.99050 * 18 16 14 20 20 C 1.40037 * 119.72127 * 215.13400 * 19 18 16 21 21 C 1.35885 * 120.99154 * 180.02562 * 20 19 18 22 22 C 1.40663 * 119.99874 * 0.24687 * 21 20 19 23 23 N 1.33688 * 120.91489 * 180.25219 * 22 21 20 24 24 C 1.31082 * 121.36373 * 179.79177 * 23 22 21 25 25 C 1.39325 * 121.75831 * 359.72993 * 24 23 22 26 26 C 1.36568 * 119.92150 * 0.02562 * 25 24 23 27 27 C 1.40831 * 118.15771 * 359.97438 * 26 25 24 28 28 C 1.37809 * 119.72128 * 35.15349 * 19 18 16 29 29 H 1.08008 * 119.99500 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00314 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99997 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47259 * 4.99894 * 3 2 1 33 33 H 1.09000 * 109.47494 * 245.00303 * 3 2 1 34 34 H 1.08993 * 109.47791 * 25.02229 * 5 4 3 35 35 H 1.09002 * 109.47185 * 145.02427 * 5 4 3 36 36 H 0.96999 * 120.00046 * 179.97438 * 9 8 6 37 37 H 0.96994 * 120.00309 * 4.98121 * 18 16 14 38 38 H 1.08001 * 119.50490 * 359.97423 * 20 19 18 39 39 H 1.07996 * 119.99955 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.12086 * 179.75359 * 24 23 22 41 41 H 1.08004 * 120.04272 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.92346 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.27441 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5311 1.7730 2.4497 6 6 2.8385 3.2378 2.6258 7 1 3.3290 3.7855 1.8347 8 6 2.4936 3.8787 3.7968 9 7 2.7615 5.1571 3.9503 10 14 1.6459 2.9311 5.1654 11 1 2.6683 2.3532 6.0742 12 1 0.7652 3.8493 5.9312 13 1 0.8303 1.8375 4.5787 14 6 4.2750 0.9509 0.9596 15 8 4.6344 0.4937 -0.1056 16 6 5.2524 1.0914 2.0800 17 8 4.9201 1.6405 3.1101 18 7 6.5037 0.6084 1.9471 19 6 7.3854 0.6459 3.0299 20 6 8.7497 0.8694 2.8069 21 6 9.6302 0.9104 3.8410 22 6 9.1764 0.7216 5.1590 23 7 10.0258 0.7632 6.1905 24 6 9.6119 0.5926 7.4224 25 6 8.2700 0.3654 7.7204 26 6 7.3478 0.3156 6.7143 27 6 7.7962 0.4994 5.3920 28 6 6.9054 0.4621 4.3085 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 1.4555 1.6154 2.5289 35 1 3.0403 1.1993 3.2241 36 1 2.5185 5.6080 4.7740 37 1 6.7919 0.2347 1.0997 38 1 9.1075 1.0106 1.7977 39 1 10.6791 1.0835 3.6506 40 1 10.3303 0.6294 8.2281 41 1 7.9595 0.2280 8.7456 42 1 6.3036 0.1401 6.9268 43 1 5.8524 0.2893 4.4752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340628361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:08 Heat of formation + Delta-G solvation = 35.781545 kcal Electronic energy + Delta-G solvation = -28806.181551 eV Core-core repulsion = 24818.132289 eV Total energy + Delta-G solvation = -3988.049262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 6.06 seconds Orbital eigenvalues (eV) -41.04797 -40.25631 -38.58114 -36.94067 -36.00080 -34.16646 -33.41638 -33.29298 -32.16469 -30.35912 -29.26206 -28.23069 -26.67007 -24.72869 -23.85689 -22.90713 -22.36889 -21.81212 -20.08368 -19.29493 -18.54307 -17.58489 -17.17743 -16.99589 -16.59128 -16.26654 -15.48819 -15.32167 -15.25412 -14.67062 -14.41772 -14.27137 -14.11786 -13.87495 -13.76173 -13.43385 -13.22065 -13.04231 -12.83092 -12.40366 -12.34828 -12.11159 -11.84736 -11.66639 -11.47274 -11.36050 -11.04753 -10.76076 -10.59929 -10.52273 -10.25365 -9.92908 -9.59973 -9.53430 -9.34045 -8.83758 -8.62488 -8.53833 -8.06700 -7.78538 -6.09407 -4.06605 0.39187 0.76727 1.85948 2.06510 2.27312 2.78520 2.93660 3.26278 3.31143 3.33292 3.69818 3.95611 4.13573 4.27342 4.38097 4.62193 4.69591 4.79906 4.92149 5.03084 5.08990 5.14041 5.14525 5.24090 5.33201 5.51246 5.68883 5.72278 5.77655 5.88517 5.97010 6.05520 6.11291 6.17653 6.26725 6.31963 6.42200 6.58908 6.71462 6.75457 6.80628 6.92105 7.07462 7.35299 7.52020 7.77870 7.88723 8.11378 8.40095 8.50909 8.90889 9.50437 11.04117 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011031 B = 0.003894 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.689895 B = 7188.000231 C = 8754.134649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.140 3.860 4 N -0.551 5.551 5 C 0.203 3.797 6 C -0.513 4.513 7 H 0.072 0.928 8 C 0.081 3.919 9 N -0.896 5.896 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.511 3.489 15 O -0.553 6.553 16 C 0.489 3.511 17 O -0.430 6.430 18 N -0.661 5.661 19 C 0.159 3.841 20 C -0.113 4.113 21 C -0.076 4.076 22 C 0.109 3.891 23 N -0.473 5.473 24 C 0.121 3.879 25 C -0.177 4.177 26 C -0.054 4.054 27 C -0.078 4.078 28 C -0.103 4.103 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.264 0.736 37 H 0.418 0.582 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.587 -12.540 0.816 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.280 5.280 5 C 0.083 3.917 6 C -0.551 4.551 7 H 0.091 0.909 8 C -0.122 4.122 9 N -0.534 5.534 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.433 6.433 16 C 0.270 3.730 17 O -0.297 6.297 18 N -0.310 5.310 19 C 0.064 3.936 20 C -0.134 4.134 21 C -0.096 4.096 22 C -0.012 4.012 23 N -0.180 5.180 24 C -0.052 4.052 25 C -0.197 4.197 26 C -0.080 4.080 27 C -0.081 4.081 28 C -0.125 4.125 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.255 0.745 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.257 -12.012 0.836 14.600 hybrid contribution -1.278 -0.493 0.701 1.539 sum 6.979 -12.505 1.537 14.403 Atomic orbital electron populations 1.23841 0.95738 1.01876 1.00867 1.23315 0.96133 0.99004 0.99584 1.20643 0.92224 0.95444 0.89923 1.47897 1.07497 1.59899 1.12734 1.20243 0.95385 0.97452 0.78604 1.21046 1.39626 0.91557 1.02916 0.90942 1.24714 0.95250 0.94582 0.97637 1.69881 1.47376 1.09445 1.26730 0.86927 0.79882 0.80183 0.83105 1.19911 1.21247 1.19164 1.19727 0.83651 0.79686 0.87570 1.90671 1.78710 1.46297 1.27640 1.20400 0.82918 0.80126 0.89542 1.90995 1.75672 1.34690 1.28378 1.43253 1.11929 1.61402 1.14400 1.17626 0.89295 0.99060 0.87667 1.20726 0.91468 1.01004 1.00217 1.20532 1.00159 0.99253 0.89612 1.18849 0.88995 0.99929 0.93444 1.67968 1.37712 1.12835 0.99531 1.22862 0.94326 0.94249 0.93800 1.21845 0.94559 1.02743 1.00504 1.21527 1.00463 0.94667 0.91391 1.18658 0.93942 1.01154 0.94332 1.21187 1.00402 1.00540 0.90399 0.88613 0.88197 0.87522 0.89034 0.89217 0.94991 0.93236 0.92635 0.74453 0.84654 0.84308 0.82653 0.84659 0.84330 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 14.32 29.01 0.42 -1.92 16 2 C -0.16 -2.34 9.85 -36.03 -0.35 -2.69 16 3 C 0.14 2.35 5.83 -5.20 -0.03 2.32 16 4 N -0.55 -11.00 2.45 -176.99 -0.43 -11.44 16 5 C 0.20 4.61 3.84 -5.19 -0.02 4.59 16 6 C -0.51 -13.91 8.30 -34.44 -0.29 -14.20 16 7 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 8 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 9 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 10 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 14 C 0.51 9.99 7.68 -11.63 -0.09 9.90 16 15 O -0.55 -10.66 16.05 5.49 0.09 -10.58 16 16 C 0.49 9.36 7.41 -11.63 -0.09 9.28 16 17 O -0.43 -9.67 9.93 5.48 0.05 -9.61 16 18 N -0.66 -10.14 5.31 -10.30 -0.05 -10.19 16 19 C 0.16 2.39 6.24 -83.76 -0.52 1.86 16 20 C -0.11 -1.41 9.85 -39.75 -0.39 -1.80 16 21 C -0.08 -0.98 9.96 -39.51 -0.39 -1.37 16 22 C 0.11 1.61 6.61 -84.81 -0.56 1.05 16 23 N -0.47 -6.61 10.34 -10.95 -0.11 -6.72 16 24 C 0.12 1.37 11.15 -17.47 -0.19 1.18 16 25 C -0.18 -1.93 10.03 -39.78 -0.40 -2.33 16 26 C -0.05 -0.71 9.89 -39.20 -0.39 -1.10 16 27 C -0.08 -1.19 5.74 -106.80 -0.61 -1.80 16 28 C -0.10 -1.67 8.39 -38.96 -0.33 -1.99 16 29 H 0.10 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.09 1.52 7.76 -51.93 -0.40 1.12 16 33 H 0.09 1.47 7.37 -51.93 -0.38 1.08 16 34 H 0.03 0.71 7.09 -51.93 -0.37 0.35 16 35 H 0.05 1.15 5.34 -51.93 -0.28 0.87 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.42 5.35 8.30 -40.82 -0.34 5.02 16 38 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 42 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.14 2.44 6.50 -52.49 -0.34 2.09 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -33.37 369.80 -8.19 -41.56 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.07 Total: 8.28 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -4.34 Total: 3.15 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.17 Total: -54.65 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.14 Total: -20.19 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.37 -8.19 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340628361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.343 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.06 seconds