Wall clock time and date at job start Wed Apr 1 2020 01:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99866 * 2 1 4 4 N 1.46497 * 109.47081 * 124.99755 * 3 2 1 5 5 C 1.46502 * 119.99914 * 274.48136 * 4 3 2 6 6 C 1.50702 * 109.47270 * 265.01815 * 5 4 3 7 7 H 1.08001 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00286 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00375 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99753 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47168 * 89.99910 * 10 8 6 12 12 H 1.48500 * 109.47178 * 210.00286 * 10 8 6 13 13 H 1.48506 * 109.47176 * 329.99840 * 10 8 6 14 14 C 1.34775 * 119.99945 * 94.48445 * 4 3 2 15 15 O 1.21358 * 119.99854 * 354.61715 * 14 4 3 16 16 C 1.49347 * 119.99794 * 174.62020 * 14 4 3 17 17 O 1.21373 * 120.00592 * 354.43426 * 16 14 4 18 18 N 1.34780 * 119.99629 * 174.44055 * 16 14 4 19 19 C 1.39686 * 119.99787 * 184.99050 * 18 16 14 20 20 C 1.40037 * 119.72127 * 215.13400 * 19 18 16 21 21 C 1.35885 * 120.99154 * 180.02562 * 20 19 18 22 22 C 1.40663 * 119.99874 * 0.24687 * 21 20 19 23 23 N 1.33688 * 120.91489 * 180.25219 * 22 21 20 24 24 C 1.31082 * 121.36373 * 179.79177 * 23 22 21 25 25 C 1.39325 * 121.75831 * 359.72993 * 24 23 22 26 26 C 1.36568 * 119.92150 * 0.02562 * 25 24 23 27 27 C 1.40831 * 118.15771 * 359.97438 * 26 25 24 28 28 C 1.37809 * 119.72128 * 35.15349 * 19 18 16 29 29 H 1.08008 * 119.99500 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00314 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99997 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47259 * 4.99894 * 3 2 1 33 33 H 1.09000 * 109.47494 * 245.00303 * 3 2 1 34 34 H 1.08993 * 109.47791 * 25.02229 * 5 4 3 35 35 H 1.09002 * 109.47185 * 145.02427 * 5 4 3 36 36 H 0.96999 * 120.00046 * 179.97438 * 9 8 6 37 37 H 0.96994 * 120.00309 * 4.98121 * 18 16 14 38 38 H 1.08001 * 119.50490 * 359.97423 * 20 19 18 39 39 H 1.07996 * 119.99955 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.12086 * 179.75359 * 24 23 22 41 41 H 1.08004 * 120.04272 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.92346 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.27441 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5311 1.7730 2.4497 6 6 2.8385 3.2378 2.6258 7 1 3.3290 3.7855 1.8347 8 6 2.4936 3.8787 3.7968 9 7 2.7615 5.1571 3.9503 10 14 1.6459 2.9311 5.1654 11 1 2.6683 2.3532 6.0742 12 1 0.7652 3.8493 5.9312 13 1 0.8303 1.8375 4.5787 14 6 4.2750 0.9509 0.9596 15 8 4.6344 0.4937 -0.1056 16 6 5.2524 1.0914 2.0800 17 8 4.9201 1.6405 3.1101 18 7 6.5037 0.6084 1.9471 19 6 7.3854 0.6459 3.0299 20 6 8.7497 0.8694 2.8069 21 6 9.6302 0.9104 3.8410 22 6 9.1764 0.7216 5.1590 23 7 10.0258 0.7632 6.1905 24 6 9.6119 0.5926 7.4224 25 6 8.2700 0.3654 7.7204 26 6 7.3478 0.3156 6.7143 27 6 7.7962 0.4994 5.3920 28 6 6.9054 0.4621 4.3085 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 1.4555 1.6154 2.5289 35 1 3.0403 1.1993 3.2241 36 1 2.5185 5.6080 4.7740 37 1 6.7919 0.2347 1.0997 38 1 9.1075 1.0106 1.7977 39 1 10.6791 1.0835 3.6506 40 1 10.3303 0.6294 8.2281 41 1 7.9595 0.2280 8.7456 42 1 6.3036 0.1401 6.9268 43 1 5.8524 0.2893 4.4752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340628361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:04 Heat of formation + Delta-G solvation = 14.044224 kcal Electronic energy + Delta-G solvation = -28807.124152 eV Core-core repulsion = 24818.132289 eV Total energy + Delta-G solvation = -3988.991863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.30562 -41.52120 -39.97299 -38.23381 -37.45496 -35.39563 -34.95985 -34.42229 -33.92400 -31.35823 -30.40916 -30.08828 -28.05654 -25.95869 -25.03769 -24.49397 -23.57754 -23.11808 -21.33682 -20.60010 -19.68681 -19.10037 -18.85037 -18.45046 -17.72764 -17.70739 -16.92240 -16.70360 -16.48104 -16.03728 -15.88557 -15.56570 -15.34305 -15.08788 -14.98852 -14.79517 -14.44333 -14.38927 -14.11916 -14.02454 -13.81879 -13.34256 -13.17841 -13.06118 -12.88485 -12.65422 -12.45785 -12.31874 -12.23693 -11.97303 -11.69128 -11.57124 -11.17584 -10.76077 -10.63233 -10.47519 -10.22555 -9.71033 -9.60053 -8.95592 -8.25678 -6.26776 -0.64843 -0.27288 0.39908 0.97955 1.07545 1.34962 1.38436 1.45021 1.54922 1.83182 2.23399 2.36232 2.53237 3.09531 3.11872 3.27602 3.37035 3.61361 3.79085 3.97533 4.00755 4.00932 4.07074 4.12039 4.25350 4.43829 4.53401 4.63573 4.67691 4.75599 4.77852 4.88403 4.89786 5.02911 5.05999 5.15757 5.19903 5.30935 5.36632 5.48530 5.58487 5.66907 5.80904 5.84029 5.99760 6.08836 6.34823 6.68860 6.69943 6.90621 6.97115 7.34210 8.91624 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011031 B = 0.003894 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.689895 B = 7188.000231 C = 8754.134649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.183 4.183 3 C 0.136 3.864 4 N -0.558 5.558 5 C 0.217 3.783 6 C -0.503 4.503 7 H 0.025 0.975 8 C 0.021 3.979 9 N -0.949 5.949 10 Si 0.935 3.065 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.237 1.237 14 C 0.509 3.491 15 O -0.551 6.551 16 C 0.488 3.512 17 O -0.473 6.473 18 N -0.642 5.642 19 C 0.140 3.860 20 C -0.109 4.109 21 C -0.076 4.076 22 C 0.091 3.909 23 N -0.493 5.493 24 C 0.123 3.877 25 C -0.163 4.163 26 C -0.077 4.077 27 C -0.100 4.100 28 C -0.121 4.121 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.264 0.736 37 H 0.430 0.570 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.196 0.804 41 H 0.173 0.827 42 H 0.144 0.856 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 -14.585 1.815 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.202 4.202 3 C 0.015 3.985 4 N -0.287 5.287 5 C 0.096 3.904 6 C -0.542 4.542 7 H 0.044 0.956 8 C -0.177 4.177 9 N -0.590 5.590 10 Si 0.759 3.241 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.160 1.160 14 C 0.291 3.709 15 O -0.431 6.431 16 C 0.270 3.730 17 O -0.343 6.343 18 N -0.291 5.291 19 C 0.045 3.955 20 C -0.130 4.130 21 C -0.095 4.095 22 C -0.030 4.030 23 N -0.201 5.201 24 C -0.050 4.050 25 C -0.182 4.182 26 C -0.103 4.103 27 C -0.103 4.103 28 C -0.143 4.143 29 H 0.139 0.861 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.270 0.730 38 H 0.184 0.816 39 H 0.181 0.819 40 H 0.212 0.788 41 H 0.190 0.810 42 H 0.162 0.838 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.475 -14.106 1.774 16.552 hybrid contribution -1.221 0.137 0.396 1.291 sum 7.253 -13.969 2.170 15.889 Atomic orbital electron populations 1.24105 0.95004 1.03350 0.97371 1.23117 0.96717 0.97607 1.02719 1.20800 0.91917 0.97037 0.88723 1.47921 1.08242 1.59908 1.12662 1.19908 0.95890 0.94420 0.80193 1.21172 1.38011 0.93602 1.01404 0.95643 1.25590 0.96302 0.95366 1.00428 1.70046 1.49746 1.11546 1.27651 0.85903 0.79007 0.79500 0.79685 1.19995 1.20933 1.15990 1.19851 0.83718 0.79588 0.87738 1.90658 1.78639 1.46286 1.27533 1.20447 0.83887 0.79812 0.88845 1.90973 1.76645 1.37050 1.29651 1.43067 1.10780 1.60107 1.15129 1.17871 0.90275 1.00183 0.87121 1.20962 0.90036 1.00199 1.01815 1.20858 1.01319 0.98288 0.89007 1.19176 0.88968 1.00226 0.94616 1.68046 1.37763 1.13967 1.00342 1.23613 0.95425 0.92007 0.93923 1.22267 0.93950 1.00324 1.01696 1.21781 1.01499 0.95682 0.91371 1.18860 0.94326 1.02145 0.94976 1.21162 0.99776 1.01792 0.91538 0.86058 0.87691 0.87384 0.89291 0.89309 0.93621 0.93231 0.92737 0.72997 0.81578 0.81934 0.78767 0.80967 0.83810 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 14.32 67.78 0.97 -2.63 16 2 C -0.18 -5.01 9.85 25.65 0.25 -4.76 16 3 C 0.14 4.55 5.83 85.63 0.50 5.05 16 4 N -0.56 -22.49 2.45 -832.22 -2.04 -24.53 16 5 C 0.22 9.90 3.84 85.63 0.33 10.22 16 6 C -0.50 -28.20 8.30 25.60 0.21 -27.99 16 7 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 8 C 0.02 1.18 5.47 84.65 0.46 1.65 16 9 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 10 Si 0.94 43.39 27.47 68.60 1.88 45.28 16 11 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 14 C 0.51 20.16 7.68 87.24 0.67 20.83 16 15 O -0.55 -21.20 16.05 -3.27 -0.05 -21.25 16 16 C 0.49 19.27 7.41 87.24 0.65 19.92 16 17 O -0.47 -22.13 9.93 -3.32 -0.03 -22.16 16 18 N -0.64 -19.96 5.31 -304.86 -1.62 -21.58 16 19 C 0.14 4.28 6.24 38.22 0.24 4.52 16 20 C -0.11 -2.65 9.85 22.16 0.22 -2.43 16 21 C -0.08 -1.87 9.96 22.32 0.22 -1.65 16 22 C 0.09 2.63 6.61 40.31 0.27 2.90 16 23 N -0.49 -12.99 10.34 -188.55 -1.95 -14.94 16 24 C 0.12 2.47 11.15 85.07 0.95 3.41 16 25 C -0.16 -3.17 10.03 22.14 0.22 -2.95 16 26 C -0.08 -2.00 9.89 22.51 0.22 -1.77 16 27 C -0.10 -3.09 5.74 -21.28 -0.12 -3.21 16 28 C -0.12 -4.06 8.39 22.68 0.19 -3.87 16 29 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 31 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.09 2.95 7.76 -2.38 -0.02 2.94 16 33 H 0.09 2.92 7.37 -2.39 -0.02 2.90 16 34 H 0.05 1.97 7.09 -2.39 -0.02 1.95 16 35 H 0.05 2.32 5.34 -2.39 -0.01 2.30 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.43 10.89 8.30 -92.71 -0.77 10.12 16 38 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 42 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.12 4.50 6.50 -2.91 -0.02 4.48 16 Total: -1.00 -75.76 369.80 3.17 -72.60 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.23 Total: 28.57 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.45 Total: 17.25 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.31 Total: -120.28 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.09 Total: -43.41 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.28 kcal Total: -75.76 3.17 -72.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340628361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.640 kcal (2) G-P(sol) polarization free energy of solvation -75.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds