Wall clock time and date at job start Wed Apr 1 2020 01:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46728 * 2 1 4 4 N 1.46495 * 109.47299 * 119.99825 * 2 1 3 5 5 N 1.40078 * 126.03871 * 308.69647 * 4 2 1 6 6 C 1.30844 * 108.20198 * 180.16473 * 5 4 2 7 7 C 1.39860 * 108.20460 * 359.59184 * 6 5 4 8 8 C 1.34955 * 126.03351 * 128.39732 * 4 2 1 9 9 C 1.50701 * 126.12534 * 0.04768 * 8 4 2 10 10 H 1.09000 * 109.87047 * 146.70199 * 9 8 4 11 11 O 1.43740 * 109.88278 * 25.68483 * 9 8 4 12 12 C 1.44575 * 106.86894 * 214.17374 * 11 9 8 13 13 C 1.54994 * 103.58903 * 39.88313 * 12 11 9 14 14 C 1.54107 * 109.87277 * 267.69776 * 9 8 4 15 15 H 1.08997 * 110.48843 * 2.65519 * 14 9 8 16 16 N 1.46501 * 110.48753 * 240.13080 * 14 9 8 17 17 C 1.34781 * 119.99572 * 155.00572 * 16 14 9 18 18 O 1.21277 * 120.00093 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99637 * 180.02562 * 17 16 14 20 20 S 1.81004 * 109.46929 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99770 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99897 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99659 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99741 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00084 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47222 * 89.99512 * 25 23 21 27 27 H 1.48500 * 109.46976 * 210.00074 * 25 23 21 28 28 H 1.48503 * 109.47028 * 329.99577 * 25 23 21 29 29 H 1.09000 * 109.47068 * 299.99734 * 1 2 3 30 30 H 1.09002 * 109.47435 * 59.99612 * 1 2 3 31 31 H 1.09006 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47068 * 240.00266 * 2 1 3 33 33 H 1.08996 * 109.47257 * 299.99982 * 3 2 1 34 34 H 1.09000 * 109.47129 * 60.00303 * 3 2 1 35 35 H 1.09004 * 109.46968 * 179.97438 * 3 2 1 36 36 H 1.08000 * 125.89643 * 179.84761 * 6 5 4 37 37 H 1.08005 * 126.04417 * 180.28522 * 7 6 5 38 38 H 1.09000 * 110.50216 * 281.37667 * 12 11 9 39 39 H 1.09003 * 110.76958 * 158.51507 * 12 11 9 40 40 H 1.08995 * 110.90985 * 204.85888 * 13 12 11 41 41 H 1.08999 * 110.90413 * 81.24955 * 13 12 11 42 42 H 0.96995 * 120.00410 * 335.00293 * 16 14 9 43 43 H 1.08997 * 109.46924 * 299.99551 * 19 17 16 44 44 H 1.08998 * 109.46924 * 60.00169 * 19 17 16 45 45 H 0.96995 * 120.00257 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1961 5 7 1.6254 -0.4314 2.5155 6 6 2.2795 -1.2453 3.3040 7 6 3.1017 -2.0539 2.5126 8 6 2.9221 -1.6925 1.2210 9 6 3.6089 -2.2994 0.0248 10 1 4.6189 -2.6081 0.2945 11 8 3.6599 -1.3429 -1.0470 12 6 3.5303 -2.0869 -2.2798 13 6 2.4632 -3.1605 -1.9467 14 6 2.8067 -3.5148 -0.4793 15 1 1.8970 -3.6414 0.1076 16 7 3.6252 -4.7285 -0.4229 17 6 3.0342 -5.9357 -0.3225 18 8 1.8249 -6.0171 -0.2793 19 6 3.8761 -7.1842 -0.2639 20 16 2.7988 -8.6327 -0.1312 21 6 4.0101 -9.9113 -0.0815 22 1 5.0599 -9.6628 -0.1308 23 6 3.6149 -11.2380 0.0211 24 7 4.5197 -12.1932 0.0578 25 14 1.7990 -11.6678 0.1057 26 1 1.2753 -11.8768 -1.2681 27 1 1.6210 -12.9111 0.8980 28 1 1.0571 -10.5569 0.7545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4427 0.0005 36 1 2.1956 -1.2883 4.3799 37 1 3.7628 -2.8299 2.8692 38 1 4.4779 -2.5564 -2.5438 39 1 3.1856 -1.4405 -3.0870 40 1 2.5727 -4.0314 -2.5929 41 1 1.4579 -2.7461 -2.0217 42 1 4.5923 -4.6634 -0.4579 43 1 4.4772 -7.2599 -1.1700 44 1 4.5326 -7.1393 0.6050 45 1 4.2437 -13.1202 0.1298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348069022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:30 Heat of formation + Delta-G solvation = -27.423000 kcal Electronic energy + Delta-G solvation = -27495.750790 eV Core-core repulsion = 23640.404725 eV Total energy + Delta-G solvation = -3855.346065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.55765 -41.13370 -39.81388 -36.54041 -35.70785 -34.66316 -32.84678 -32.43784 -30.77317 -30.42983 -28.47694 -28.20140 -27.81957 -24.44356 -23.53503 -23.21909 -21.65354 -21.58943 -20.60008 -19.88882 -18.27820 -18.17708 -17.72245 -17.10275 -16.75211 -16.41304 -16.20202 -16.05159 -15.96236 -15.67509 -15.44038 -15.10433 -14.92944 -14.67555 -14.41575 -14.05332 -13.89729 -13.71109 -13.41349 -13.32835 -13.19086 -13.08734 -13.01399 -12.98738 -12.62495 -12.37909 -12.34482 -12.27985 -12.22509 -11.87008 -11.62646 -11.16622 -11.07375 -10.77639 -10.52122 -10.43563 -10.10761 -9.49475 -8.98561 -8.50940 -6.21228 0.79870 0.98966 1.31252 1.46215 1.51644 1.53520 1.58111 1.83199 2.08384 2.25085 2.63346 2.74505 2.87553 3.27053 3.34462 3.58096 3.71939 3.80303 3.90302 3.99074 4.04557 4.11631 4.17316 4.26205 4.28028 4.48894 4.53446 4.63941 4.66793 4.67057 4.75778 4.79831 4.81106 4.84502 4.91187 4.95381 5.10675 5.20156 5.21915 5.25772 5.62946 5.71626 5.74400 6.10022 6.12821 6.37620 6.75536 6.94636 7.13662 8.61344 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.002533 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.085542 B =11049.412259 C =11419.642739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 C -0.149 4.149 4 N -0.350 5.350 5 N -0.322 5.322 6 C 0.035 3.965 7 C -0.276 4.276 8 C 0.072 3.928 9 C 0.148 3.852 10 H 0.121 0.879 11 O -0.369 6.369 12 C 0.047 3.953 13 C -0.165 4.165 14 C 0.127 3.873 15 H 0.077 0.923 16 N -0.701 5.701 17 C 0.542 3.458 18 O -0.558 6.558 19 C -0.110 4.110 20 S -0.178 6.178 21 C -0.526 4.526 22 H 0.064 0.936 23 C 0.045 3.955 24 N -0.917 5.917 25 Si 0.913 3.087 26 H -0.262 1.262 27 H -0.261 1.261 28 H -0.237 1.237 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.205 0.795 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.420 0.580 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 28.704 -3.630 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 C -0.206 4.206 4 N -0.133 5.133 5 N -0.144 5.144 6 C -0.149 4.149 7 C -0.306 4.306 8 C -0.057 4.057 9 C 0.088 3.912 10 H 0.138 0.862 11 O -0.288 6.288 12 C -0.029 4.029 13 C -0.204 4.204 14 C 0.020 3.980 15 H 0.095 0.905 16 N -0.357 5.357 17 C 0.328 3.672 18 O -0.436 6.436 19 C -0.261 4.261 20 S 0.049 5.951 21 C -0.674 4.674 22 H 0.083 0.917 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.185 1.185 28 H -0.161 1.161 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.222 0.778 37 H 0.177 0.823 38 H 0.104 0.896 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.258 0.742 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.928 29.667 -3.717 30.156 hybrid contribution 1.899 -1.696 0.386 2.575 sum -2.028 27.971 -3.331 28.242 Atomic orbital electron populations 1.22096 0.93343 1.02150 1.03847 1.21924 0.95409 0.94717 0.84151 1.22037 1.01335 0.93934 1.03328 1.49015 1.31339 1.26969 1.05963 1.77239 1.24134 1.25151 0.87877 1.24255 0.95260 0.94108 1.01289 1.21463 1.09842 1.08119 0.91140 1.21072 0.95051 0.93146 0.96439 1.21375 0.98818 0.86753 0.84288 0.86153 1.88977 1.94147 1.30404 1.15239 1.23897 0.98634 0.93453 0.86881 1.23576 1.01182 1.00937 0.94714 1.22144 0.94544 0.83593 0.97711 0.90476 1.45660 1.10978 1.03698 1.75318 1.19951 0.87828 0.84699 0.74770 1.90712 1.16028 1.86956 1.49857 1.23264 1.01662 0.93455 1.07747 1.84771 1.13971 0.99359 1.97006 1.22457 0.94091 0.93145 1.57706 0.91742 1.25546 1.02132 0.95279 0.93050 1.70009 1.35528 1.00911 1.49034 0.85889 0.80468 0.80104 0.80053 1.18702 1.18548 1.16124 0.92550 0.88190 0.93602 0.85260 0.88441 0.93152 0.92702 0.77850 0.82341 0.89626 0.85766 0.89335 0.89396 0.74168 0.86377 0.86583 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.32 71.98 0.67 -1.82 16 2 C 0.14 2.33 3.22 44.99 0.14 2.47 16 3 C -0.15 -2.14 9.52 71.98 0.69 -1.45 16 4 N -0.35 -7.76 3.31 -314.29 -1.04 -8.80 16 5 N -0.32 -8.11 12.33 -57.03 -0.70 -8.81 16 6 C 0.04 0.78 12.02 85.23 1.02 1.80 16 7 C -0.28 -5.95 10.72 21.99 0.24 -5.71 16 8 C 0.07 1.53 5.82 41.40 0.24 1.77 16 9 C 0.15 2.36 3.59 30.22 0.11 2.47 16 10 H 0.12 1.48 7.64 -2.39 -0.02 1.46 16 11 O -0.37 -5.11 8.19 -148.98 -1.22 -6.33 16 12 C 0.05 0.44 7.54 72.66 0.55 0.99 16 13 C -0.17 -2.45 6.88 31.90 0.22 -2.23 16 14 C 0.13 2.42 3.03 45.99 0.14 2.56 16 15 H 0.08 2.05 7.10 -2.39 -0.02 2.04 16 16 N -0.70 -13.94 5.08 -437.82 -2.22 -16.16 16 17 C 0.54 16.81 7.85 87.66 0.69 17.50 16 18 O -0.56 -22.46 15.51 -3.02 -0.05 -22.50 16 19 C -0.11 -3.81 6.16 71.24 0.44 -3.38 16 20 S -0.18 -8.65 18.55 -56.49 -1.05 -9.70 16 21 C -0.53 -29.83 10.04 67.96 0.68 -29.15 16 22 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 23 C 0.05 2.62 5.50 84.86 0.47 3.09 16 24 N -0.92 -55.08 13.97 21.65 0.30 -54.78 16 25 Si 0.91 44.42 27.74 68.60 1.90 46.32 16 26 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 29 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.13 1.91 5.22 -2.39 -0.01 1.90 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 36 H 0.20 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 1.48 8.06 -2.39 -0.02 1.46 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.42 5.35 8.35 -92.71 -0.77 4.58 16 43 H 0.12 3.64 8.14 -2.40 -0.02 3.62 16 44 H 0.12 3.65 8.14 -2.40 -0.02 3.63 16 45 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.11 385.18 2.41 -74.71 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.19 Total: 17.16 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 6.29 Total: -11.10 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -3.66 Total: -88.55 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.27 Total: -28.84 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.70 kcal Total: -77.11 2.41 -74.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348069022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.285 kcal (2) G-P(sol) polarization free energy of solvation -77.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds