Wall clock time and date at job start Wed Apr 1 2020 01:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46851 * 2 1 4 4 N 1.46503 * 109.47490 * 119.99741 * 2 1 3 5 5 N 1.40086 * 126.03497 * 300.02957 * 4 2 1 6 6 C 1.30834 * 108.20441 * 179.97438 * 5 4 2 7 7 C 1.39875 * 108.20191 * 359.77911 * 6 5 4 8 8 C 1.34938 * 126.03646 * 120.00035 * 4 2 1 9 9 C 1.50702 * 126.13210 * 359.97438 * 8 4 2 10 10 H 1.09003 * 109.86438 * 26.00369 * 9 8 4 11 11 O 1.43740 * 109.88219 * 147.16696 * 9 8 4 12 12 C 1.44382 * 106.97749 * 145.93798 * 11 9 8 13 13 C 1.54999 * 103.48833 * 319.94292 * 12 11 9 14 14 C 1.54102 * 109.87712 * 265.00362 * 9 8 4 15 15 H 1.08995 * 110.48792 * 357.34735 * 14 9 8 16 16 N 1.46497 * 110.48776 * 119.86646 * 14 9 8 17 17 C 1.34777 * 119.99525 * 204.99411 * 16 14 9 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.08999 * 109.46569 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46893 * 299.99855 * 1 2 3 31 31 H 1.08995 * 109.47065 * 60.00573 * 1 2 3 32 32 H 1.09000 * 109.47369 * 240.00055 * 2 1 3 33 33 H 1.09009 * 109.46872 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.46818 * 299.99578 * 3 2 1 35 35 H 1.09000 * 109.47090 * 59.99884 * 3 2 1 36 36 H 1.08004 * 125.90417 * 180.02562 * 6 5 4 37 37 H 1.07998 * 126.03926 * 180.24145 * 7 6 5 38 38 H 1.09004 * 110.61433 * 78.43839 * 12 11 9 39 39 H 1.08995 * 110.62110 * 201.27947 * 12 11 9 40 40 H 1.08997 * 110.90270 * 278.82135 * 13 12 11 41 41 H 1.09003 * 110.90533 * 155.22108 * 13 12 11 42 42 H 0.97000 * 120.00580 * 25.00157 * 16 14 9 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7587 -0.3241 2.5231 6 6 2.3625 -1.1785 3.3087 7 6 3.0210 -2.1180 2.5086 8 6 2.7975 -1.7922 1.2144 9 6 3.3194 -2.5314 0.0093 10 1 3.3891 -1.8522 -0.8404 11 8 4.6118 -3.0894 0.3001 12 6 4.7034 -4.3381 -0.4190 13 6 3.2906 -4.9542 -0.2547 14 6 2.3805 -3.7044 -0.3331 15 1 1.5728 -3.7718 0.3957 16 7 1.8380 -3.5491 -1.6851 17 6 0.6645 -4.1264 -2.0107 18 8 0.0574 -4.7742 -1.1843 19 6 0.1034 -3.9616 -3.3996 20 16 -1.4741 -4.8406 -3.5213 21 6 -1.8917 -4.4893 -5.1966 22 1 -1.2309 -3.8878 -5.8032 23 6 -3.0695 -4.9864 -5.7372 24 7 -3.8742 -5.7208 -4.9984 25 14 -3.5119 -4.6146 -7.5135 26 1 -2.9531 -5.6714 -8.3944 27 1 -4.9894 -4.5792 -7.6587 28 1 -2.9448 -3.2975 -7.8995 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.3510 -1.1635 4.3886 37 1 3.6061 -2.9543 2.8614 38 1 4.9243 -4.1596 -1.4713 39 1 5.4604 -4.9832 0.0269 40 1 3.1915 -5.4476 0.7122 41 1 3.0714 -5.6467 -1.0675 42 1 2.3234 -3.0308 -2.3459 43 1 -0.0540 -2.9026 -3.6045 44 1 0.8049 -4.3719 -4.1260 45 1 -4.6976 -6.0679 -5.3761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348069024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:34 Heat of formation + Delta-G solvation = -3.995325 kcal Electronic energy + Delta-G solvation = -27597.971589 eV Core-core repulsion = 23743.641425 eV Total energy + Delta-G solvation = -3854.330165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66422 -40.11269 -38.63006 -35.85532 -34.57109 -32.48602 -31.96104 -31.33511 -29.93790 -29.13086 -27.51787 -27.48699 -25.53780 -23.52452 -23.17992 -22.02800 -20.72159 -20.41862 -19.51353 -18.01408 -17.61881 -17.01924 -16.34807 -16.04727 -15.33157 -15.18559 -14.99252 -14.94098 -14.85284 -14.76976 -14.29687 -14.04498 -13.56396 -13.31486 -13.20978 -13.09836 -12.70657 -12.62229 -12.47149 -12.32472 -12.18851 -11.95626 -11.63789 -11.58180 -11.52290 -11.33059 -11.11435 -11.08210 -10.81766 -10.72195 -10.20475 -9.88493 -9.56899 -9.48279 -9.14216 -9.09023 -8.60439 -8.31384 -6.57274 -6.27384 -3.98803 1.65322 2.21671 2.71549 2.85724 2.91438 3.18112 3.21813 3.26137 3.45867 3.65208 4.08399 4.14423 4.15734 4.28307 4.47571 4.63954 4.67209 4.74036 4.79679 4.86074 4.93791 5.01140 5.08024 5.26424 5.32794 5.38104 5.42037 5.46103 5.52531 5.53637 5.62018 5.63824 5.75023 5.77674 5.79146 5.86313 5.98892 6.01997 6.03230 6.26901 6.51214 6.57078 6.86305 7.47624 7.53893 7.59959 8.29129 8.43624 9.18008 10.79962 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.002900 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.720659 B = 9651.669877 C =10659.326103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 C -0.160 4.160 4 N -0.354 5.354 5 N -0.285 5.285 6 C 0.039 3.961 7 C -0.244 4.244 8 C 0.077 3.923 9 C 0.141 3.859 10 H 0.082 0.918 11 O -0.355 6.355 12 C 0.045 3.955 13 C -0.164 4.164 14 C 0.125 3.875 15 H 0.110 0.890 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.509 6.509 19 C -0.154 4.154 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.183 0.817 37 H 0.148 0.852 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.040 9.728 10.256 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.052 3.948 3 C -0.218 4.218 4 N -0.138 5.138 5 N -0.106 5.106 6 C -0.146 4.146 7 C -0.274 4.274 8 C -0.051 4.051 9 C 0.080 3.920 10 H 0.100 0.900 11 O -0.273 6.273 12 C -0.032 4.032 13 C -0.203 4.203 14 C 0.018 3.982 15 H 0.128 0.872 16 N -0.389 5.389 17 C 0.321 3.679 18 O -0.382 6.382 19 C -0.304 4.304 20 S 0.169 5.831 21 C -0.685 4.685 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.200 0.800 37 H 0.166 0.834 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.210 9.752 11.603 22.192 hybrid contribution 1.052 0.345 -2.514 2.747 sum 17.263 10.097 9.089 21.968 Atomic orbital electron populations 1.22135 0.92583 1.03720 1.03541 1.21366 0.96200 0.93810 0.83424 1.22138 1.01549 0.94460 1.03640 1.48756 1.38675 1.20763 1.05634 1.77316 1.23525 1.23469 0.86276 1.23845 0.96994 0.93656 1.00129 1.21193 1.10116 1.05259 0.90798 1.20534 0.97283 0.90867 0.96387 1.21130 0.84148 0.93979 0.92714 0.90047 1.88963 1.31108 1.36602 1.70582 1.23687 0.97839 0.84718 0.96924 1.23562 0.94221 0.97949 1.04532 1.22187 0.96902 0.92870 0.86254 0.87228 1.46106 1.23869 1.56444 1.12520 1.20372 0.79515 0.78140 0.89904 1.90727 1.58380 1.38389 1.50716 1.23539 1.05875 1.05979 0.95043 1.85442 1.14903 1.66254 1.16506 1.22852 1.09752 1.38821 0.97101 0.90920 1.24993 0.95187 0.94514 0.98839 1.70013 1.11668 1.32216 1.36293 0.86167 0.77777 0.78808 0.82753 1.20242 1.20716 1.19683 0.91567 0.91062 0.90377 0.88540 0.92199 0.90493 0.90974 0.80021 0.83418 0.91678 0.88143 0.89217 0.88957 0.76814 0.89186 0.89109 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.45 37.16 0.35 -1.38 16 2 C 0.15 1.53 3.64 -67.93 -0.25 1.28 16 3 C -0.16 -1.34 9.45 37.16 0.35 -0.99 16 4 N -0.35 -4.25 3.28 -50.69 -0.17 -4.42 16 5 N -0.28 -3.70 12.43 30.63 0.38 -3.32 16 6 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 7 C -0.24 -2.81 10.36 -40.01 -0.41 -3.23 16 8 C 0.08 0.91 5.79 -82.27 -0.48 0.43 16 9 C 0.14 1.43 3.33 -27.31 -0.09 1.34 16 10 H 0.08 0.71 6.45 -51.93 -0.33 0.38 16 11 O -0.35 -3.62 10.87 -35.23 -0.38 -4.01 16 12 C 0.04 0.36 7.72 38.21 0.29 0.65 16 13 C -0.16 -1.61 6.88 -24.72 -0.17 -1.78 16 14 C 0.12 1.42 3.03 -66.40 -0.20 1.22 16 15 H 0.11 1.57 7.10 -51.93 -0.37 1.20 16 16 N -0.73 -8.66 5.08 -52.33 -0.27 -8.93 16 17 C 0.53 9.12 7.85 -10.98 -0.09 9.03 16 18 O -0.51 -10.90 15.51 5.55 0.09 -10.81 16 19 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 20 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 21 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 22 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 25 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.83 6.59 -51.93 -0.34 0.49 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 42 H 0.40 3.47 8.35 -40.82 -0.34 3.12 16 43 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 44 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -34.96 390.84 -8.28 -43.24 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.85 Total: 3.51 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -0.48 Total: -8.42 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.68 Total: -41.59 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.30 Total: -14.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.96 -8.28 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348069024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.243 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds