Wall clock time and date at job start Wed Apr 1 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46851 * 2 1 4 4 N 1.46503 * 109.47490 * 119.99741 * 2 1 3 5 5 N 1.40086 * 126.03497 * 300.02957 * 4 2 1 6 6 C 1.30834 * 108.20441 * 179.97438 * 5 4 2 7 7 C 1.39875 * 108.20191 * 359.77911 * 6 5 4 8 8 C 1.34938 * 126.03646 * 120.00035 * 4 2 1 9 9 C 1.50702 * 126.13210 * 359.97438 * 8 4 2 10 10 H 1.09003 * 109.86438 * 26.00369 * 9 8 4 11 11 O 1.43740 * 109.88219 * 147.16696 * 9 8 4 12 12 C 1.44382 * 106.97749 * 145.93798 * 11 9 8 13 13 C 1.54999 * 103.48833 * 319.94292 * 12 11 9 14 14 C 1.54102 * 109.87712 * 265.00362 * 9 8 4 15 15 H 1.08995 * 110.48792 * 357.34735 * 14 9 8 16 16 N 1.46497 * 110.48776 * 119.86646 * 14 9 8 17 17 C 1.34777 * 119.99525 * 204.99411 * 16 14 9 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.08999 * 109.46569 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46893 * 299.99855 * 1 2 3 31 31 H 1.08995 * 109.47065 * 60.00573 * 1 2 3 32 32 H 1.09000 * 109.47369 * 240.00055 * 2 1 3 33 33 H 1.09009 * 109.46872 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.46818 * 299.99578 * 3 2 1 35 35 H 1.09000 * 109.47090 * 59.99884 * 3 2 1 36 36 H 1.08004 * 125.90417 * 180.02562 * 6 5 4 37 37 H 1.07998 * 126.03926 * 180.24145 * 7 6 5 38 38 H 1.09004 * 110.61433 * 78.43839 * 12 11 9 39 39 H 1.08995 * 110.62110 * 201.27947 * 12 11 9 40 40 H 1.08997 * 110.90270 * 278.82135 * 13 12 11 41 41 H 1.09003 * 110.90533 * 155.22108 * 13 12 11 42 42 H 0.97000 * 120.00580 * 25.00157 * 16 14 9 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 45 45 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7587 -0.3241 2.5231 6 6 2.3625 -1.1785 3.3087 7 6 3.0210 -2.1180 2.5086 8 6 2.7975 -1.7922 1.2144 9 6 3.3194 -2.5314 0.0093 10 1 3.3891 -1.8522 -0.8404 11 8 4.6118 -3.0894 0.3001 12 6 4.7034 -4.3381 -0.4190 13 6 3.2906 -4.9542 -0.2547 14 6 2.3805 -3.7044 -0.3331 15 1 1.5728 -3.7718 0.3957 16 7 1.8380 -3.5491 -1.6851 17 6 0.6645 -4.1264 -2.0107 18 8 0.0574 -4.7742 -1.1843 19 6 0.1034 -3.9616 -3.3996 20 16 -1.4741 -4.8406 -3.5213 21 6 -1.8917 -4.4893 -5.1966 22 1 -1.2309 -3.8878 -5.8032 23 6 -3.0695 -4.9864 -5.7372 24 7 -3.8742 -5.7208 -4.9984 25 14 -3.5119 -4.6146 -7.5135 26 1 -2.9531 -5.6714 -8.3944 27 1 -4.9894 -4.5792 -7.6587 28 1 -2.9448 -3.2975 -7.8995 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.3510 -1.1635 4.3886 37 1 3.6061 -2.9543 2.8614 38 1 4.9243 -4.1596 -1.4713 39 1 5.4604 -4.9832 0.0269 40 1 3.1915 -5.4476 0.7122 41 1 3.0714 -5.6467 -1.0675 42 1 2.3234 -3.0308 -2.3459 43 1 -0.0540 -2.9026 -3.6045 44 1 0.8049 -4.3719 -4.1260 45 1 -4.6976 -6.0679 -5.3761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348069024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:33 Heat of formation + Delta-G solvation = -28.373052 kcal Electronic energy + Delta-G solvation = -27599.028687 eV Core-core repulsion = 23743.641425 eV Total energy + Delta-G solvation = -3855.387262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53082 -41.14735 -39.78442 -36.65620 -35.71286 -34.57924 -32.84375 -32.38720 -30.80457 -30.35954 -28.47152 -28.28304 -27.62981 -24.31255 -24.00697 -23.03320 -21.67725 -21.49737 -20.43733 -19.82350 -18.52604 -18.12786 -17.65880 -16.90163 -16.87530 -16.41942 -16.20254 -16.04736 -15.98408 -15.58938 -15.57458 -15.11841 -14.70533 -14.53023 -14.39323 -14.03861 -13.95279 -13.72904 -13.24245 -13.20485 -13.16197 -13.09195 -13.03542 -12.89025 -12.59219 -12.45262 -12.41521 -12.31410 -12.16693 -11.73415 -11.58140 -11.14061 -11.05322 -10.90571 -10.47726 -10.26536 -10.14291 -9.49553 -8.66304 -8.34495 -6.12269 0.76796 1.24367 1.39916 1.42615 1.47911 1.54313 1.56767 1.85404 2.12053 2.27516 2.77757 3.00146 3.24617 3.31433 3.33358 3.47535 3.66085 3.86536 3.88120 3.93212 3.96573 4.03743 4.09779 4.19433 4.30743 4.50510 4.51493 4.59759 4.61491 4.63874 4.73320 4.78305 4.81635 4.84798 4.87591 4.98914 5.11637 5.15124 5.19047 5.26591 5.42525 5.68700 5.73812 6.03545 6.20058 6.38020 6.72113 7.07311 7.16354 8.74504 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.002900 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.720659 B = 9651.669877 C =10659.326103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 C -0.152 4.152 4 N -0.359 5.359 5 N -0.315 5.315 6 C 0.035 3.965 7 C -0.257 4.257 8 C 0.064 3.936 9 C 0.152 3.848 10 H 0.103 0.897 11 O -0.363 6.363 12 C 0.050 3.950 13 C -0.162 4.162 14 C 0.126 3.874 15 H 0.077 0.923 16 N -0.705 5.705 17 C 0.540 3.460 18 O -0.559 6.559 19 C -0.129 4.129 20 S -0.151 6.151 21 C -0.544 4.544 22 H 0.085 0.915 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.997 3.003 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.256 1.256 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.209 0.791 37 H 0.158 0.842 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.418 0.582 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.478 11.125 8.472 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 C -0.210 4.210 4 N -0.144 5.144 5 N -0.137 5.137 6 C -0.150 4.150 7 C -0.286 4.286 8 C -0.064 4.064 9 C 0.092 3.908 10 H 0.120 0.880 11 O -0.281 6.281 12 C -0.026 4.026 13 C -0.201 4.201 14 C 0.019 3.981 15 H 0.095 0.905 16 N -0.361 5.361 17 C 0.327 3.673 18 O -0.436 6.436 19 C -0.280 4.280 20 S 0.076 5.924 21 C -0.692 4.692 22 H 0.103 0.897 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.194 1.194 27 H -0.206 1.206 28 H -0.180 1.180 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.225 0.775 37 H 0.175 0.825 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.256 0.744 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.710 11.187 9.812 23.906 hybrid contribution 0.389 -0.080 -1.850 1.892 sum 19.098 11.107 7.962 23.484 Atomic orbital electron populations 1.22080 0.93535 1.01825 1.03976 1.21601 0.95460 0.95021 0.83406 1.22083 1.01569 0.93244 1.04063 1.48949 1.38680 1.20986 1.05781 1.77266 1.24620 1.24704 0.87092 1.24353 0.96133 0.93049 1.01425 1.21459 1.10481 1.05674 0.91030 1.20892 0.97285 0.90966 0.97216 1.21031 0.83771 0.93356 0.92669 0.87959 1.88969 1.30523 1.37400 1.71210 1.23838 0.96757 0.83886 0.98110 1.23529 0.95230 0.97032 1.04317 1.22146 0.96410 0.94810 0.84705 0.90517 1.45724 1.22067 1.54946 1.13316 1.20079 0.80472 0.78014 0.88776 1.90724 1.60175 1.40972 1.51779 1.23368 1.01769 1.06066 0.96797 1.85653 1.20823 1.68634 1.17322 1.23201 1.10145 1.38674 0.97183 0.89719 1.26108 0.95050 0.94117 1.03855 1.70185 1.12291 1.33713 1.38655 0.84977 0.77404 0.79309 0.76459 1.19372 1.20569 1.18013 0.94470 0.92125 0.88470 0.86895 0.91973 0.88246 0.92346 0.77457 0.82459 0.89773 0.86151 0.89338 0.89601 0.74383 0.86895 0.86796 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.45 71.98 0.68 -2.64 16 2 C 0.15 2.72 3.64 44.99 0.16 2.88 16 3 C -0.15 -2.27 9.45 71.98 0.68 -1.59 16 4 N -0.36 -8.43 3.28 -314.28 -1.03 -9.46 16 5 N -0.32 -8.19 12.43 -57.02 -0.71 -8.90 16 6 C 0.04 0.78 12.03 85.24 1.03 1.80 16 7 C -0.26 -5.76 10.36 21.99 0.23 -5.53 16 8 C 0.06 1.46 5.79 41.41 0.24 1.70 16 9 C 0.15 2.77 3.33 30.22 0.10 2.87 16 10 H 0.10 1.43 6.45 -2.39 -0.02 1.42 16 11 O -0.36 -6.41 10.87 -148.98 -1.62 -8.03 16 12 C 0.05 0.64 7.72 72.67 0.56 1.20 16 13 C -0.16 -2.94 6.88 31.90 0.22 -2.72 16 14 C 0.13 2.72 3.03 45.98 0.14 2.86 16 15 H 0.08 2.25 7.10 -2.39 -0.02 2.24 16 16 N -0.70 -15.29 5.08 -437.85 -2.22 -17.51 16 17 C 0.54 18.09 7.85 87.66 0.69 18.78 16 18 O -0.56 -24.61 15.51 -3.04 -0.05 -24.65 16 19 C -0.13 -4.65 6.16 71.24 0.44 -4.21 16 20 S -0.15 -8.08 20.57 -56.49 -1.16 -9.24 16 21 C -0.54 -29.97 9.50 67.95 0.65 -29.33 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 23 C 0.01 0.75 5.49 84.86 0.47 1.21 16 24 N -0.91 -55.13 13.22 21.65 0.29 -54.85 16 25 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 1.67 6.59 -2.39 -0.02 1.65 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.21 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.70 8.06 -2.39 -0.02 1.68 16 42 H 0.42 5.79 8.35 -92.71 -0.77 5.02 16 43 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 44 H 0.11 3.61 8.14 -2.40 -0.02 3.59 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.31 390.84 2.02 -77.28 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.23 Total: 23.58 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 6.28 Total: -12.70 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.68 Total: -90.71 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.67 Total: -32.68 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -79.31 2.02 -77.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348069024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.908 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds