Wall clock time and date at job start Wed Apr 1 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47433 * 2 1 4 4 N 1.46497 * 109.47288 * 120.00479 * 2 1 3 5 5 N 1.40086 * 126.03332 * 299.97572 * 4 2 1 6 6 C 1.30838 * 108.20715 * 180.02562 * 5 4 2 7 7 C 1.39879 * 108.19995 * 359.78047 * 6 5 4 8 8 C 1.34946 * 126.03978 * 119.99294 * 4 2 1 9 9 C 1.50699 * 126.12716 * 359.94933 * 8 4 2 10 10 H 1.08992 * 110.32987 * 24.20141 * 9 8 4 11 11 O 1.44428 * 110.37422 * 146.45099 * 9 8 4 12 12 C 1.44418 * 105.27730 * 159.45259 * 11 9 8 13 13 C 1.54484 * 104.90071 * 319.43393 * 12 11 9 14 14 C 1.54482 * 110.46520 * 261.88470 * 9 8 4 15 15 H 1.08997 * 110.51032 * 98.35979 * 14 9 8 16 16 N 1.46501 * 110.50943 * 335.79035 * 14 9 8 17 17 C 1.34775 * 120.00128 * 155.00324 * 16 14 9 18 18 O 1.21280 * 119.99670 * 359.97438 * 17 16 14 19 19 C 1.50696 * 120.00597 * 179.97438 * 17 16 14 20 20 S 1.80996 * 109.47405 * 179.97438 * 19 17 16 21 21 C 1.76202 * 99.99915 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00434 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00085 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99916 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00270 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47032 * 59.99611 * 25 23 21 27 27 H 1.48500 * 109.47289 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46978 * 300.00230 * 25 23 21 29 29 H 1.08998 * 109.47200 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.46758 * 59.99589 * 1 2 3 31 31 H 1.09002 * 109.47244 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47215 * 240.00256 * 2 1 3 33 33 H 1.08999 * 109.47244 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46968 * 299.99945 * 3 2 1 35 35 H 1.09004 * 109.46711 * 59.99948 * 3 2 1 36 36 H 1.07995 * 125.90077 * 179.97438 * 6 5 4 37 37 H 1.07990 * 126.03813 * 180.23039 * 7 6 5 38 38 H 1.09002 * 110.37229 * 78.32007 * 12 11 9 39 39 H 1.08999 * 110.37270 * 200.54594 * 12 11 9 40 40 H 1.08994 * 110.51204 * 142.68360 * 13 12 11 41 41 H 1.09001 * 110.50893 * 265.38883 * 13 12 11 42 42 H 0.96999 * 120.00332 * 334.98910 * 16 14 9 43 43 H 1.09002 * 109.47027 * 299.99727 * 19 17 16 44 44 H 1.09000 * 109.46718 * 59.99068 * 19 17 16 45 45 H 0.96997 * 119.99857 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7594 -0.3238 2.5230 6 6 2.3638 -1.1778 3.3087 7 6 3.0219 -2.1176 2.5085 8 6 2.7973 -1.7925 1.2142 9 6 3.3187 -2.5319 0.0091 10 1 3.3610 -1.8674 -0.8538 11 8 4.6251 -3.0832 0.2837 12 6 4.8046 -4.1379 -0.6863 13 6 3.4314 -4.8408 -0.7676 14 6 2.4300 -3.7574 -0.2989 15 1 1.7185 -3.5239 -1.0909 16 7 1.7262 -4.1974 0.9083 17 6 0.5670 -4.8769 0.8027 18 8 0.1064 -5.1237 -0.2918 19 6 -0.1567 -5.3300 2.0444 20 16 -1.6684 -6.2079 1.5752 21 6 -2.2950 -6.6128 3.1714 22 1 -1.7524 -6.3145 4.0563 23 6 -3.4856 -7.3161 3.2917 24 7 -4.1468 -7.6801 2.2133 25 14 -4.1496 -7.7460 4.9840 26 1 -4.3905 -6.4985 5.7528 27 1 -5.4253 -8.4925 4.8403 28 1 -3.1611 -8.5881 5.7043 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.3535 -1.1619 4.3884 37 1 3.6074 -2.9536 2.8612 38 1 5.0749 -3.7198 -1.6559 39 1 5.5695 -4.8374 -0.3490 40 1 3.2173 -5.1433 -1.7926 41 1 3.4032 -5.7023 -0.1004 42 1 2.0945 -3.9999 1.7837 43 1 0.4877 -5.9964 2.6178 44 1 -0.4144 -4.4623 2.6517 45 1 -4.9790 -8.1713 2.2974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348069026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:38 Heat of formation + Delta-G solvation = -1.275186 kcal Electronic energy + Delta-G solvation = -27912.853085 eV Core-core repulsion = 24058.640874 eV Total energy + Delta-G solvation = -3854.212211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73944 -39.98130 -38.53100 -35.89312 -34.44820 -32.42094 -31.91192 -31.30815 -29.96021 -28.93901 -27.61773 -27.56130 -25.47151 -23.50827 -23.15728 -21.82218 -20.91353 -20.34682 -19.36895 -17.93767 -17.57818 -16.81182 -16.28160 -15.83231 -15.62277 -15.38122 -15.00906 -14.92106 -14.79593 -14.63878 -14.28941 -13.95822 -13.58899 -13.36812 -13.08112 -12.93437 -12.73519 -12.53503 -12.50241 -12.37472 -11.92461 -11.85127 -11.73266 -11.65221 -11.52186 -11.34903 -11.03663 -11.02769 -10.75950 -10.69259 -10.27998 -9.81952 -9.43727 -9.41097 -9.05733 -8.94405 -8.63489 -8.24228 -6.49443 -6.20907 -3.91388 1.64753 2.21115 2.70321 3.00466 3.04308 3.24612 3.28049 3.31355 3.49909 3.69211 4.08564 4.12753 4.21519 4.30962 4.54024 4.61513 4.68066 4.74798 4.83468 4.83766 4.87877 5.12929 5.14425 5.21431 5.27894 5.34795 5.35541 5.40703 5.49512 5.55615 5.59147 5.61107 5.73637 5.82404 5.84761 5.90267 5.94652 5.99508 6.16257 6.34871 6.56329 6.59571 6.84742 7.59929 7.60499 7.69762 8.36159 8.57956 9.24545 10.86506 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012485 B = 0.003236 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.162360 B = 8650.907878 C = 9545.204861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 C -0.160 4.160 4 N -0.353 5.353 5 N -0.282 5.282 6 C 0.046 3.954 7 C -0.256 4.256 8 C 0.089 3.911 9 C 0.132 3.868 10 H 0.089 0.911 11 O -0.355 6.355 12 C 0.044 3.956 13 C -0.166 4.166 14 C 0.126 3.874 15 H 0.107 0.893 16 N -0.727 5.727 17 C 0.534 3.466 18 O -0.519 6.519 19 C -0.152 4.152 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.869 5.869 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.184 0.816 37 H 0.150 0.850 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.404 0.596 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.774 14.757 -5.526 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 C -0.217 4.217 4 N -0.137 5.137 5 N -0.103 5.103 6 C -0.140 4.140 7 C -0.285 4.285 8 C -0.039 4.039 9 C 0.072 3.928 10 H 0.107 0.893 11 O -0.272 6.272 12 C -0.033 4.033 13 C -0.205 4.205 14 C 0.019 3.981 15 H 0.124 0.876 16 N -0.384 5.384 17 C 0.321 3.679 18 O -0.394 6.394 19 C -0.303 4.303 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.201 0.799 37 H 0.168 0.832 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.242 0.758 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.194 15.442 -7.437 24.278 hybrid contribution 0.706 -0.767 2.673 2.869 sum 17.901 14.675 -4.764 23.633 Atomic orbital electron populations 1.22143 0.92642 1.03752 1.03513 1.21362 0.96169 0.93842 0.83514 1.22131 1.01570 0.94433 1.03604 1.48739 1.38638 1.20636 1.05715 1.77352 1.23343 1.23442 0.86126 1.23871 0.96516 0.93374 1.00241 1.21217 1.10740 1.05690 0.90874 1.20291 0.96988 0.90482 0.96108 1.21514 0.84253 0.93854 0.93191 0.89341 1.89214 1.32016 1.50662 1.55358 1.23501 0.97838 0.89242 0.92690 1.23498 0.93916 0.99436 1.03687 1.22166 0.94171 0.92110 0.89670 0.87555 1.46237 1.24294 1.58901 1.08955 1.20347 0.79729 0.76633 0.91193 1.90684 1.65926 1.54443 1.28330 1.23513 1.04130 1.04483 0.98130 1.85327 1.17154 1.69120 1.11623 1.22832 1.10851 1.42233 0.92457 0.90971 1.24979 0.95658 0.94964 0.97887 1.70006 1.15747 1.36485 1.28144 0.86233 0.78165 0.78659 0.82522 1.19914 1.20813 1.19900 0.90899 0.90603 0.91501 0.88538 0.92177 0.90608 0.90917 0.79870 0.83243 0.91742 0.88281 0.89259 0.89370 0.75777 0.89225 0.89323 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.45 37.16 0.35 -1.26 16 2 C 0.15 1.41 3.65 -67.93 -0.25 1.16 16 3 C -0.16 -1.22 9.45 37.16 0.35 -0.87 16 4 N -0.35 -4.13 3.28 -50.69 -0.17 -4.30 16 5 N -0.28 -3.69 12.43 30.63 0.38 -3.31 16 6 C 0.05 0.53 12.03 -17.36 -0.21 0.32 16 7 C -0.26 -2.92 8.34 -40.01 -0.33 -3.25 16 8 C 0.09 1.03 5.27 -82.26 -0.43 0.59 16 9 C 0.13 1.32 3.38 -27.11 -0.09 1.23 16 10 H 0.09 0.71 6.90 -51.93 -0.36 0.35 16 11 O -0.35 -3.61 11.06 -35.23 -0.39 -4.00 16 12 C 0.04 0.34 7.62 37.94 0.29 0.63 16 13 C -0.17 -1.61 6.90 -25.01 -0.17 -1.78 16 14 C 0.13 1.45 3.34 -66.21 -0.22 1.23 16 15 H 0.11 1.32 7.55 -51.93 -0.39 0.93 16 16 N -0.73 -10.18 4.42 -52.14 -0.23 -10.42 16 17 C 0.53 10.01 7.85 -10.99 -0.09 9.93 16 18 O -0.52 -11.46 15.51 5.56 0.09 -11.37 16 19 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 25 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.72 6.57 -51.93 -0.34 0.38 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.15 1.53 7.91 -52.49 -0.41 1.12 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 42 H 0.40 5.21 5.78 -40.82 -0.24 4.97 16 43 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 44 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -35.49 386.18 -8.16 -43.65 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.77 Total: 4.80 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -0.38 Total: -8.06 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.72 Total: -43.55 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.30 Total: -15.37 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.49 -8.16 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348069026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.370 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds