Wall clock time and date at job start Tue Mar 31 2020 23:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 C 1.53001 * 109.47206 * 240.00077 * 2 1 3 5 5 C 1.50699 * 109.47275 * 60.00046 * 4 2 1 6 6 H 1.07998 * 119.99831 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00331 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00234 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99768 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46725 * 90.00642 * 9 7 5 11 11 H 1.48495 * 109.47052 * 210.00241 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00607 * 9 7 5 13 13 C 1.53001 * 109.47071 * 120.00053 * 2 1 3 14 14 N 1.46494 * 109.47174 * 300.00141 * 13 2 1 15 15 C 1.34780 * 120.00156 * 180.02562 * 14 13 2 16 16 O 1.21599 * 119.99985 * 0.02562 * 15 14 13 17 17 C 1.47436 * 120.00000 * 179.97438 * 15 14 13 18 18 C 1.39759 * 120.19445 * 5.79701 * 17 15 14 19 19 C 1.37942 * 119.89420 * 180.29743 * 18 17 15 20 20 F 1.35106 * 119.84637 * 179.70141 * 19 18 17 21 21 C 1.38773 * 120.30371 * 359.67901 * 19 18 17 22 22 C 1.37964 * 120.39784 * 0.02562 * 21 19 18 23 23 N 1.48029 * 119.95339 * 180.02562 * 22 21 19 24 24 O 1.21795 * 119.99922 * 5.99510 * 23 22 21 25 25 O 1.21803 * 119.99783 * 185.99164 * 23 22 21 26 26 C 1.38930 * 120.09408 * 359.97438 * 22 21 19 27 27 N 1.38999 * 120.15038 * 179.97438 * 26 22 21 28 28 H 1.08999 * 109.47489 * 299.99988 * 1 2 3 29 29 H 1.09001 * 109.47072 * 60.00349 * 1 2 3 30 30 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46924 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47168 * 300.00052 * 3 2 1 33 33 H 1.09004 * 109.46741 * 60.00399 * 3 2 1 34 34 H 1.09003 * 109.47049 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.47306 * 299.99901 * 4 2 1 36 36 H 0.97000 * 120.00178 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47301 * 180.02562 * 13 2 1 38 38 H 1.09002 * 109.46813 * 59.99936 * 13 2 1 39 39 H 0.97005 * 119.99925 * 0.02562 * 14 13 2 40 40 H 1.08004 * 120.05557 * 359.97438 * 18 17 15 41 41 H 1.07997 * 119.80383 * 180.02562 * 21 19 18 42 42 H 0.97002 * 119.99827 * 32.79151 * 27 26 22 43 43 H 0.96999 * 120.00252 * 212.50769 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 1.4324 0.1381 -4.8058 9 14 2.9443 -2.0010 -3.9034 10 1 2.0857 -3.2118 -3.9483 11 1 3.7358 -1.9087 -5.1564 12 1 3.8650 -2.0899 -2.7416 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6695 16 8 2.5775 -1.4790 3.7811 17 6 1.3866 0.2044 4.8733 18 6 0.4861 1.2665 4.7534 19 6 0.0355 1.9167 5.8834 20 9 -0.8303 2.9472 5.7660 21 6 0.4669 1.5169 7.1403 22 6 1.3509 0.4660 7.2733 23 7 1.8043 0.0473 8.6189 24 8 1.3156 0.5560 9.6118 25 8 2.6660 -0.8059 8.7330 26 6 1.8154 -0.2005 6.1463 27 7 2.7065 -1.2590 6.2789 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 -0.7216 -1.2490 35 1 1.6767 -1.7490 -1.2493 36 1 1.6668 -0.1932 -5.6868 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7489 1.2492 39 1 0.9936 0.7578 2.3564 40 1 0.1477 1.5812 3.7772 41 1 0.1086 2.0313 8.0197 42 1 2.6582 -1.8393 7.0547 43 1 3.3739 -1.4199 5.5938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360410589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:40 Heat of formation + Delta-G solvation = -58.945547 kcal Electronic energy + Delta-G solvation = -29275.349224 eV Core-core repulsion = 24852.423062 eV Total energy + Delta-G solvation = -4422.926161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -49.45677 -42.62725 -40.86749 -38.99694 -37.41552 -37.05637 -35.17974 -33.91954 -32.75157 -32.05243 -29.66052 -27.96404 -26.91510 -26.71729 -26.69634 -24.44186 -23.01086 -22.44366 -21.10742 -19.80004 -19.16514 -18.43758 -18.19720 -17.91269 -17.72623 -17.28497 -16.88762 -16.66712 -16.28473 -16.07806 -15.61715 -15.41837 -14.53260 -14.20330 -14.10053 -13.90259 -13.86373 -13.51197 -13.29197 -12.91488 -12.77199 -12.50780 -12.36728 -11.92103 -11.63841 -11.51032 -11.39238 -11.28242 -11.12254 -11.03120 -10.73962 -10.64813 -10.34809 -10.28635 -10.11707 -9.84680 -9.64924 -9.18612 -9.11145 -8.61977 -8.49509 -6.12430 -4.10561 -0.70754 0.16116 0.74994 0.92614 2.12766 2.81493 2.96809 3.10646 3.24616 3.33385 3.35707 3.38241 3.77461 3.91716 4.10533 4.35788 4.37614 4.72190 4.74382 4.94677 5.07223 5.18737 5.19043 5.35036 5.45620 5.64876 5.91275 5.91585 5.97317 6.00184 6.12978 6.16601 6.44710 6.46196 6.69397 6.73763 6.88287 6.91556 7.06523 7.17736 7.23400 7.26151 7.31358 7.68732 7.89656 8.43236 8.90909 9.49793 11.00145 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.002432 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.166582 B =11508.224824 C =12604.258934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.001 4.001 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.125 3.875 14 N -0.708 5.708 15 C 0.565 3.435 16 O -0.537 6.537 17 C -0.179 4.179 18 C -0.024 4.024 19 C 0.047 3.953 20 F -0.123 7.123 21 C -0.026 4.026 22 C -0.106 4.106 23 N 0.048 4.952 24 O -0.161 6.161 25 O -0.174 6.174 26 C 0.324 3.676 27 N -0.822 5.822 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.414 0.586 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 2.760 23.241 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.039 4.039 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.359 5.359 15 C 0.351 3.649 16 O -0.416 6.416 17 C -0.188 4.188 18 C -0.045 4.045 19 C 0.024 3.976 20 F -0.101 7.101 21 C -0.047 4.047 22 C -0.196 4.196 23 N 0.562 4.438 24 O -0.376 6.376 25 O -0.382 6.382 26 C 0.205 3.795 27 N -0.369 5.369 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.176 0.824 41 H 0.186 0.814 42 H 0.250 0.750 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.554 2.202 22.454 22.615 hybrid contribution 0.344 -0.559 0.032 0.657 sum -1.210 1.644 22.486 22.578 Atomic orbital electron populations 1.21799 0.94682 1.01428 1.00851 1.20720 0.95901 0.95980 0.93817 1.21795 1.00604 0.95472 1.00861 1.19590 0.96337 0.95505 0.92492 1.21045 1.32061 1.13451 0.88569 0.90372 1.25000 0.95657 0.96745 0.95989 1.69893 1.45759 1.40492 0.97936 0.86861 0.81301 0.83882 0.77715 1.20358 1.21455 1.19020 1.21781 0.99237 0.96199 0.82565 1.46071 1.52552 1.31756 1.05516 1.17562 0.80774 0.83817 0.82708 1.90671 1.38682 1.26071 1.86195 1.19504 1.04349 1.02239 0.92725 1.21618 0.92051 0.91316 0.99514 1.16701 0.97097 0.91446 0.92308 1.91596 1.66768 1.55261 1.96515 1.20838 0.92024 0.92849 0.98981 1.20293 1.12445 1.04886 0.82017 1.43181 0.99002 0.99240 1.02351 1.94555 1.58403 1.57018 1.27575 1.94421 1.24997 1.26051 1.92730 1.17202 0.86265 0.86243 0.89739 1.43353 1.34364 1.29070 1.30127 0.95190 0.90615 0.93228 0.93232 0.90619 0.95164 0.96296 0.96751 0.92706 0.91226 0.91239 0.76313 0.82422 0.81412 0.74956 0.73849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.05 37.16 0.30 -1.70 16 2 C -0.06 -1.03 0.54 -154.51 -0.08 -1.11 16 3 C -0.13 -1.99 8.05 37.16 0.30 -1.69 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.03 8.20 -34.44 -0.28 -13.32 16 6 H 0.08 2.10 5.92 -52.49 -0.31 1.79 16 7 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 9 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 C 0.12 1.76 4.56 -4.04 -0.02 1.74 16 14 N -0.71 -7.88 4.91 -61.38 -0.30 -8.19 16 15 C 0.57 6.49 7.74 -12.51 -0.10 6.39 16 16 O -0.54 -7.51 13.93 5.28 0.07 -7.43 16 17 C -0.18 -1.64 5.89 -104.81 -0.62 -2.26 16 18 C -0.02 -0.17 9.50 -39.12 -0.37 -0.55 16 19 C 0.05 0.34 7.28 -39.49 -0.29 0.05 16 20 F -0.12 -0.96 17.26 2.25 0.04 -0.92 16 21 C -0.03 -0.20 9.52 -39.48 -0.38 -0.57 16 22 C -0.11 -0.97 6.85 -79.78 -0.55 -1.52 16 23 N 0.05 0.52 4.45 34.04 0.15 0.67 16 24 O -0.16 -1.82 18.45 -29.46 -0.54 -2.36 16 25 O -0.17 -1.95 16.00 -29.46 -0.47 -2.42 16 26 C 0.32 3.08 6.74 -83.58 -0.56 2.51 16 27 N -0.82 -7.69 7.53 32.56 0.25 -7.45 16 28 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 29 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 33 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 34 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 35 H 0.01 0.31 7.57 -51.92 -0.39 -0.09 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.40 3.61 4.23 -40.82 -0.17 3.44 16 40 H 0.16 0.80 6.45 -52.48 -0.34 0.46 16 41 H 0.17 0.99 7.60 -52.49 -0.40 0.59 16 42 H 0.41 3.59 6.52 -40.82 -0.27 3.32 16 43 H 0.42 4.18 6.52 -40.82 -0.27 3.91 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -29.68 356.05 -6.94 -36.62 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.78 Total: 6.07 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.83 Total: -10.39 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.87 Total: -40.53 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.94 Total: -12.22 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.68 -6.94 -36.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.322 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds