Wall clock time and date at job start Tue Mar 31 2020 23:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46998 * 2 1 4 4 C 1.53001 * 109.47206 * 240.00077 * 2 1 3 5 5 C 1.50699 * 109.47275 * 60.00046 * 4 2 1 6 6 H 1.07998 * 119.99831 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00331 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00234 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99768 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46725 * 90.00642 * 9 7 5 11 11 H 1.48495 * 109.47052 * 210.00241 * 9 7 5 12 12 H 1.48500 * 109.47274 * 330.00607 * 9 7 5 13 13 C 1.53001 * 109.47071 * 120.00053 * 2 1 3 14 14 N 1.46494 * 109.47174 * 300.00141 * 13 2 1 15 15 C 1.34780 * 120.00156 * 180.02562 * 14 13 2 16 16 O 1.21599 * 119.99985 * 0.02562 * 15 14 13 17 17 C 1.47436 * 120.00000 * 179.97438 * 15 14 13 18 18 C 1.39759 * 120.19445 * 5.79701 * 17 15 14 19 19 C 1.37942 * 119.89420 * 180.29743 * 18 17 15 20 20 F 1.35106 * 119.84637 * 179.70141 * 19 18 17 21 21 C 1.38773 * 120.30371 * 359.67901 * 19 18 17 22 22 C 1.37964 * 120.39784 * 0.02562 * 21 19 18 23 23 N 1.48029 * 119.95339 * 180.02562 * 22 21 19 24 24 O 1.21795 * 119.99922 * 5.99510 * 23 22 21 25 25 O 1.21803 * 119.99783 * 185.99164 * 23 22 21 26 26 C 1.38930 * 120.09408 * 359.97438 * 22 21 19 27 27 N 1.38999 * 120.15038 * 179.97438 * 26 22 21 28 28 H 1.08999 * 109.47489 * 299.99988 * 1 2 3 29 29 H 1.09001 * 109.47072 * 60.00349 * 1 2 3 30 30 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46924 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47168 * 300.00052 * 3 2 1 33 33 H 1.09004 * 109.46741 * 60.00399 * 3 2 1 34 34 H 1.09003 * 109.47049 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.47306 * 299.99901 * 4 2 1 36 36 H 0.97000 * 120.00178 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47301 * 180.02562 * 13 2 1 38 38 H 1.09002 * 109.46813 * 59.99936 * 13 2 1 39 39 H 0.97005 * 119.99925 * 0.02562 * 14 13 2 40 40 H 1.08004 * 120.05557 * 359.97438 * 18 17 15 41 41 H 1.07997 * 119.80383 * 180.02562 * 21 19 18 42 42 H 0.97002 * 119.99827 * 32.79151 * 27 26 22 43 43 H 0.96999 * 120.00252 * 212.50769 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 1.4324 0.1381 -4.8058 9 14 2.9443 -2.0010 -3.9034 10 1 2.0857 -3.2118 -3.9483 11 1 3.7358 -1.9087 -5.1564 12 1 3.8650 -2.0899 -2.7416 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6695 16 8 2.5775 -1.4790 3.7811 17 6 1.3866 0.2044 4.8733 18 6 0.4861 1.2665 4.7534 19 6 0.0355 1.9167 5.8834 20 9 -0.8303 2.9472 5.7660 21 6 0.4669 1.5169 7.1403 22 6 1.3509 0.4660 7.2733 23 7 1.8043 0.0473 8.6189 24 8 1.3156 0.5560 9.6118 25 8 2.6660 -0.8059 8.7330 26 6 1.8154 -0.2005 6.1463 27 7 2.7065 -1.2590 6.2789 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 -0.7216 -1.2490 35 1 1.6767 -1.7490 -1.2493 36 1 1.6668 -0.1932 -5.6868 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7489 1.2492 39 1 0.9936 0.7578 2.3564 40 1 0.1477 1.5812 3.7772 41 1 0.1086 2.0313 8.0197 42 1 2.6582 -1.8393 7.0547 43 1 3.3739 -1.4199 5.5938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360410589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:32 Heat of formation + Delta-G solvation = -77.089199 kcal Electronic energy + Delta-G solvation = -29276.135991 eV Core-core repulsion = 24852.423062 eV Total energy + Delta-G solvation = -4423.712929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 6.79 seconds Orbital eigenvalues (eV) -50.04513 -43.39981 -41.69274 -39.89164 -38.59757 -37.86896 -35.99568 -35.06833 -34.17241 -33.19169 -30.41601 -29.66796 -27.96995 -27.79006 -27.63126 -25.43133 -24.16550 -23.53645 -22.02877 -20.64863 -19.96558 -19.64260 -18.93929 -18.89687 -18.56422 -18.49861 -18.01670 -17.47729 -16.98819 -16.77942 -16.51405 -16.35085 -16.13091 -15.32828 -15.24537 -15.18535 -14.70221 -14.53649 -14.18069 -14.16187 -14.06905 -13.76818 -13.39639 -12.92979 -12.83475 -12.74553 -12.60298 -12.43242 -12.35210 -12.28849 -12.15381 -11.79513 -11.72167 -11.50562 -11.30333 -11.02707 -10.99412 -10.89400 -10.69776 -10.17175 -9.18284 -8.21592 -6.21602 -1.41425 -0.52596 0.02763 0.19655 1.36422 1.38341 1.39795 1.48603 1.93110 2.20599 2.39481 2.41434 2.75039 3.07007 3.14358 3.32892 3.46063 3.69038 3.89093 4.07035 4.07270 4.12104 4.16639 4.32202 4.49839 4.63291 4.72048 4.79735 4.95915 5.00498 5.01878 5.11740 5.25445 5.27044 5.33287 5.42539 5.43845 5.58038 5.71648 5.78255 5.98600 6.36120 6.39291 6.42373 6.53384 6.86191 7.03835 7.41380 8.93920 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.002432 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.166582 B =11508.224824 C =12604.258934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.127 4.127 4 C -0.005 4.005 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.249 1.249 13 C 0.138 3.862 14 N -0.699 5.699 15 C 0.568 3.432 16 O -0.564 6.564 17 C -0.186 4.186 18 C -0.004 4.004 19 C 0.052 3.948 20 F -0.122 7.122 21 C -0.014 4.014 22 C -0.114 4.114 23 N 0.049 4.951 24 O -0.174 6.174 25 O -0.190 6.190 26 C 0.320 3.680 27 N -0.822 5.822 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.412 0.588 40 H 0.184 0.816 41 H 0.184 0.816 42 H 0.416 0.584 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 3.056 25.153 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.043 4.043 5 C -0.538 4.538 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.594 5.594 9 Si 0.758 3.242 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.172 1.172 13 C 0.015 3.985 14 N -0.351 5.351 15 C 0.356 3.644 16 O -0.445 6.445 17 C -0.195 4.195 18 C -0.025 4.025 19 C 0.030 3.970 20 F -0.101 7.101 21 C -0.035 4.035 22 C -0.205 4.205 23 N 0.560 4.440 24 O -0.387 6.387 25 O -0.395 6.395 26 C 0.201 3.799 27 N -0.369 5.369 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.251 0.749 40 H 0.202 0.798 41 H 0.201 0.799 42 H 0.252 0.748 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.890 2.506 24.420 24.621 hybrid contribution 0.373 -0.556 -0.529 0.853 sum -1.518 1.950 23.892 24.019 Atomic orbital electron populations 1.21744 0.93874 1.01415 1.01418 1.20565 0.96505 0.96140 0.92698 1.21737 1.00405 0.94866 1.01395 1.19580 0.96061 0.95535 0.93099 1.21384 1.30101 1.12252 0.90079 0.92905 1.25841 0.97500 0.99877 0.95990 1.70041 1.48223 1.42690 0.98445 0.85915 0.79897 0.80424 0.77924 1.19852 1.21838 1.17240 1.21382 0.98808 0.95743 0.82575 1.45814 1.52753 1.31989 1.04582 1.17771 0.80120 0.83411 0.83087 1.90671 1.39880 1.27369 1.86583 1.19194 1.05676 1.03279 0.91379 1.21820 0.90237 0.89700 1.00697 1.16618 0.96950 0.91348 0.92114 1.91612 1.66736 1.55231 1.96474 1.21030 0.90726 0.91796 0.99908 1.20292 1.13457 1.05776 0.80937 1.43381 0.98783 0.99009 1.02872 1.94542 1.58604 1.57231 1.28313 1.94416 1.25525 1.26576 1.93026 1.17338 0.86255 0.86229 0.90106 1.43366 1.34328 1.29174 1.30046 0.90966 0.93702 0.93544 0.93550 0.93699 0.91006 0.96560 0.96756 0.92954 0.91792 0.91863 0.74865 0.79835 0.79871 0.74794 0.74145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.05 71.98 0.58 -3.06 16 2 C -0.06 -1.79 0.54 -52.18 -0.03 -1.82 16 3 C -0.13 -3.63 8.05 71.98 0.58 -3.06 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 5 C -0.50 -25.74 8.20 25.60 0.21 -25.53 16 6 H 0.05 2.94 5.92 -2.91 -0.02 2.92 16 7 C 0.00 0.22 5.47 84.65 0.46 0.69 16 8 N -0.95 -57.26 13.96 21.45 0.30 -56.96 16 9 Si 0.93 42.75 27.47 68.60 1.88 44.64 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 13 C 0.14 3.57 4.56 86.38 0.39 3.96 16 14 N -0.70 -13.12 4.91 -466.36 -2.29 -15.41 16 15 C 0.57 11.46 7.74 86.67 0.67 12.13 16 16 O -0.56 -14.75 13.93 -4.03 -0.06 -14.81 16 17 C -0.19 -2.84 5.89 -19.99 -0.12 -2.96 16 18 C 0.00 -0.04 9.50 22.57 0.21 0.17 16 19 C 0.05 0.56 7.28 22.33 0.16 0.72 16 20 F -0.12 -1.44 17.26 44.97 0.78 -0.66 16 21 C -0.01 -0.17 9.52 22.33 0.21 0.04 16 22 C -0.11 -1.87 6.85 36.47 0.25 -1.62 16 23 N 0.05 1.01 4.45 -46.21 -0.21 0.80 16 24 O -0.17 -3.76 18.45 18.89 0.35 -3.41 16 25 O -0.19 -4.17 16.00 18.88 0.30 -3.86 16 26 C 0.32 5.44 6.74 38.67 0.26 5.70 16 27 N -0.82 -14.55 7.53 -50.91 -0.38 -14.94 16 28 H 0.07 1.43 6.86 -2.39 -0.02 1.41 16 29 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 33 H 0.07 1.43 6.86 -2.38 -0.02 1.42 16 34 H 0.02 0.68 7.20 -2.39 -0.02 0.66 16 35 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.41 5.49 4.23 -92.70 -0.39 5.09 16 40 H 0.18 0.86 6.45 -2.91 -0.02 0.84 16 41 H 0.18 1.62 7.60 -2.91 -0.02 1.59 16 42 H 0.42 6.97 6.52 -92.71 -0.60 6.37 16 43 H 0.42 7.96 6.52 -92.71 -0.60 7.36 16 Total: -1.00 -66.03 356.05 4.08 -61.95 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.54 Total: 17.40 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.94 Total: -14.74 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.58 Total: -86.51 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.59 Total: -22.09 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.78 Total: -0.66 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.64 kcal Total: -66.03 4.08 -61.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.135 kcal (2) G-P(sol) polarization free energy of solvation -66.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.79 seconds