Wall clock time and date at job start Wed Apr 1 2020 01:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47055 * 2 1 4 4 N 1.46496 * 109.47442 * 179.97438 * 3 2 1 5 5 C 1.37093 * 120.00096 * 264.77075 * 4 3 2 6 6 H 1.08002 * 119.99874 * 138.85888 * 5 4 3 7 7 C 1.38946 * 120.00295 * 318.85188 * 5 4 3 8 8 N 1.31412 * 119.99968 * 341.83072 * 7 5 4 9 9 Si 1.86802 * 120.00382 * 161.82722 * 7 5 4 10 10 H 1.48505 * 109.47042 * 89.99767 * 9 7 5 11 11 H 1.48498 * 109.47336 * 210.00420 * 9 7 5 12 12 H 1.48507 * 109.46996 * 330.00293 * 9 7 5 13 13 C 1.34776 * 119.99552 * 84.76647 * 4 3 2 14 14 O 1.21294 * 119.99853 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00493 * 0.02562 * 13 4 3 16 16 C 1.50696 * 109.47324 * 179.97438 * 15 13 4 17 17 C 1.33327 * 122.70649 * 85.02710 * 16 15 13 18 18 S 1.76166 * 108.09591 * 179.97438 * 17 16 15 19 19 C 1.70959 * 90.35605 * 359.97438 * 18 17 16 20 20 N 1.38607 * 124.95267 * 179.97438 * 19 18 17 21 21 C 1.47015 * 111.00511 * 123.65816 * 20 19 18 22 22 C 1.53092 * 109.25998 * 177.60981 * 21 20 19 23 23 O 1.43023 * 109.26058 * 56.84927 * 22 21 20 24 24 C 1.43011 * 113.73531 * 301.32851 * 23 22 21 25 25 C 1.47019 * 110.99689 * 0.02562 * 20 19 18 26 26 N 1.29689 * 110.10053 * 359.97438 * 19 18 17 27 27 H 1.09001 * 109.47217 * 299.99582 * 1 2 3 28 28 H 1.08997 * 109.47357 * 60.00177 * 1 2 3 29 29 H 1.09005 * 109.46695 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47589 * 240.00118 * 2 1 3 31 31 H 1.09006 * 109.47472 * 119.99651 * 2 1 3 32 32 H 1.09009 * 109.46973 * 59.99929 * 3 2 1 33 33 H 1.08997 * 109.46894 * 300.00107 * 3 2 1 34 34 H 0.96994 * 120.00517 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47004 * 59.99834 * 15 13 4 36 36 H 1.09001 * 109.46859 * 299.99933 * 15 13 4 37 37 H 1.08006 * 125.95347 * 359.97438 * 17 16 15 38 38 H 1.09006 * 109.50646 * 297.54680 * 21 20 19 39 39 H 1.08996 * 109.50268 * 57.67066 * 21 20 19 40 40 H 1.08995 * 109.50907 * 296.91457 * 22 21 20 41 41 H 1.09006 * 109.54178 * 176.80440 * 22 21 20 42 42 H 1.08996 * 109.51064 * 298.73403 * 24 23 22 43 43 H 1.08999 * 109.54123 * 178.62525 * 24 23 22 44 44 H 1.08999 * 109.50436 * 302.32708 * 25 20 19 45 45 H 1.08991 * 109.50660 * 62.45869 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1899 1.5511 1.1832 6 1 5.0699 0.9489 1.3547 7 6 3.7522 2.4358 2.1611 8 7 2.9269 3.4084 1.8453 9 14 4.3367 2.2427 3.9247 10 1 5.5813 3.0284 4.1226 11 1 3.2867 2.7368 4.8512 12 1 4.6071 0.8091 4.2024 13 6 4.1793 1.3361 -1.1615 14 8 5.3922 1.3366 -1.1611 15 6 3.4263 1.2173 -2.4615 16 6 4.4061 1.1133 -3.6018 17 6 4.9483 -0.0438 -3.9823 18 16 6.0268 0.2770 -5.3379 19 6 5.6431 1.9413 -5.2631 20 7 6.1624 2.9144 -6.1025 21 6 5.0878 3.6480 -6.7869 22 6 5.7018 4.7491 -7.6554 23 8 6.6281 4.1636 -8.5745 24 6 7.6884 3.4419 -7.9419 25 6 7.0945 2.3274 -7.0762 26 7 4.7955 2.1607 -4.3064 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 2.6215 4.0263 2.5278 35 1 2.8000 2.0986 -2.6003 36 1 2.7994 0.3260 -2.4381 37 1 4.7594 -1.0095 -3.5371 38 1 4.5218 2.9612 -7.4162 39 1 4.4243 4.0955 -6.0470 40 1 6.2229 5.4655 -7.0204 41 1 4.9133 5.2593 -8.2088 42 1 8.2672 4.1203 -7.3151 43 1 8.3369 3.0060 -8.7018 44 1 7.8957 1.8111 -6.5475 45 1 6.5606 1.6196 -7.7101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367394200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:18 Heat of formation + Delta-G solvation = -17.886155 kcal Electronic energy + Delta-G solvation = -27395.716340 eV Core-core repulsion = 23540.783824 eV Total energy + Delta-G solvation = -3854.932517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.44413 -39.38237 -38.20264 -36.08251 -35.14000 -32.84394 -31.66921 -31.32317 -30.93966 -28.22110 -27.38137 -25.77070 -24.58777 -24.46222 -23.17378 -21.08458 -20.92915 -19.79220 -18.89518 -17.96543 -16.82654 -16.63496 -16.41423 -16.03152 -15.58846 -15.40246 -15.26585 -14.86892 -14.83346 -14.43099 -13.99910 -13.80160 -13.56152 -13.48325 -12.97189 -12.84389 -12.60521 -12.40823 -11.92898 -11.78312 -11.74798 -11.61860 -11.38346 -11.24304 -11.08125 -10.98917 -10.88508 -10.61304 -10.38550 -10.30475 -10.24853 -9.92798 -9.86952 -9.33073 -9.00248 -8.88060 -8.37663 -7.96915 -7.36892 -6.27719 -3.96121 0.98940 1.36958 1.88464 2.98642 3.13475 3.20170 3.28184 3.33205 3.50545 3.96596 4.20250 4.40733 4.54504 4.64202 4.75844 4.80956 4.92091 5.00386 5.07251 5.15934 5.30872 5.38875 5.44055 5.53775 5.56961 5.58410 5.62112 5.72014 5.77128 5.90776 6.01321 6.11353 6.16676 6.31938 6.34252 6.40010 6.47032 6.59789 6.67180 6.74946 6.92411 7.25900 7.62324 8.07598 8.33835 8.56549 9.24380 9.43588 10.06628 10.77477 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002801 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.851026 B = 9995.163283 C =10478.691876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.108 3.892 4 N -0.442 5.442 5 C -0.307 4.307 6 H 0.086 0.914 7 C 0.039 3.961 8 N -0.871 5.871 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.470 3.530 14 O -0.571 6.571 15 C -0.068 4.068 16 C 0.131 3.869 17 C -0.255 4.255 18 S 0.071 5.929 19 C 0.226 3.774 20 N -0.440 5.440 21 C 0.026 3.974 22 C 0.063 3.937 23 O -0.384 6.384 24 C 0.068 3.932 25 C 0.006 3.994 26 N -0.477 5.477 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.267 0.733 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.174 0.826 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -3.430 -17.955 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.016 4.016 4 N -0.162 5.162 5 C -0.435 4.435 6 H 0.104 0.896 7 C -0.165 4.165 8 N -0.509 5.509 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.257 3.743 14 O -0.453 6.453 15 C -0.111 4.111 16 C 0.000 4.000 17 C -0.394 4.394 18 S 0.320 5.680 19 C -0.144 4.144 20 N -0.161 5.161 21 C -0.102 4.102 22 C -0.014 4.014 23 O -0.302 6.302 24 C -0.009 4.009 25 C -0.122 4.122 26 N -0.196 5.196 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.191 0.809 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.299 -2.931 -18.322 18.600 hybrid contribution -0.742 -0.461 1.698 1.910 sum 0.557 -3.392 -16.623 16.975 Atomic orbital electron populations 1.21685 0.96338 1.00672 1.01623 1.22004 0.94896 0.99398 1.01686 1.21550 0.82316 0.94173 1.03598 1.43381 1.04344 1.63837 1.04599 1.19333 1.12005 1.21430 0.90771 0.89585 1.25409 0.97085 0.93556 1.00487 1.69928 1.33576 1.13428 1.33928 0.86109 0.78445 0.78837 0.82339 1.20318 1.20845 1.19423 1.20079 0.88035 0.81942 0.84280 1.90544 1.14016 1.54125 1.86648 1.20353 0.96030 1.04178 0.90536 1.19446 0.98404 0.86192 0.95989 1.26342 1.04787 1.03889 1.04427 1.83653 1.47265 1.04427 1.32621 1.25015 0.98693 0.92614 0.98059 1.58553 1.16663 1.21865 1.19030 1.22986 0.92619 0.96761 0.97842 1.22769 0.92826 0.94118 0.91716 1.87999 1.38842 1.70204 1.33151 1.22647 0.89463 0.92539 0.96231 1.23114 0.96992 0.98045 0.94018 1.66138 1.15119 1.32841 1.05523 0.92711 0.93129 0.93464 0.93222 0.91637 0.87751 0.93363 0.92329 0.88314 0.88643 0.80901 0.92652 0.87540 0.91550 0.87534 0.91534 0.87482 0.88278 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.14 -2.46 6.17 -26.73 -0.16 -2.62 16 3 C 0.11 2.31 4.69 -4.04 -0.02 2.29 16 4 N -0.44 -11.26 2.50 -114.81 -0.29 -11.55 16 5 C -0.31 -8.62 8.84 -14.94 -0.13 -8.76 16 6 H 0.09 2.52 7.82 -52.49 -0.41 2.11 16 7 C 0.04 1.05 4.95 -17.47 -0.09 0.96 16 8 N -0.87 -23.85 11.61 55.50 0.64 -23.21 16 9 Si 0.92 20.91 29.59 -169.99 -5.03 15.88 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.47 11.78 7.59 -10.99 -0.08 11.69 16 14 O -0.57 -16.60 15.95 5.55 0.09 -16.52 16 15 C -0.07 -1.32 4.72 -29.04 -0.14 -1.46 16 16 C 0.13 2.51 5.23 -84.19 -0.44 2.07 16 17 C -0.26 -4.26 11.11 29.02 0.32 -3.94 16 18 S 0.07 0.99 21.18 -107.50 -2.28 -1.28 16 19 C 0.23 3.67 6.81 -87.68 -0.60 3.08 16 20 N -0.44 -5.96 4.79 -175.07 -0.84 -6.80 16 21 C 0.03 0.30 5.55 -3.71 -0.02 0.28 16 22 C 0.06 0.58 7.01 37.21 0.26 0.84 16 23 O -0.38 -3.87 10.83 -35.23 -0.38 -4.25 16 24 C 0.07 0.58 7.01 37.21 0.26 0.84 16 25 C 0.01 0.07 4.67 -3.70 -0.02 0.05 16 26 N -0.48 -9.23 10.27 -11.37 -0.12 -9.35 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.81 6.60 -51.93 -0.34 0.46 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 2.48 5.76 -51.92 -0.30 2.18 16 33 H 0.05 0.95 6.66 -51.93 -0.35 0.61 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.10 1.88 7.41 -51.93 -0.38 1.49 16 36 H 0.10 1.56 6.54 -51.93 -0.34 1.22 16 37 H 0.17 2.54 8.06 -52.48 -0.42 2.11 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.11 1.34 7.92 -51.93 -0.41 0.93 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.96 7.65 -51.93 -0.40 0.56 16 45 H 0.06 0.60 7.88 -51.93 -0.41 0.20 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -34.55 376.17 -9.72 -44.27 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.70 Total: 3.51 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.49 Total: 3.64 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.60 Total: -50.90 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.29 Total: -20.77 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.28 Total: -1.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.55 -9.72 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367394200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.379 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds