Wall clock time and date at job start Wed Apr 1 2020 00:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37875 * 120.00189 * 65.60701 * 5 3 2 8 8 N 1.31514 * 119.99893 * 196.28606 * 7 5 3 9 9 Si 1.86797 * 120.00240 * 16.28455 * 7 5 3 10 10 H 1.48499 * 109.47249 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47013 * 300.00122 * 9 7 5 12 12 H 1.48500 * 109.47061 * 59.99764 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47372 * 180.02562 * 16 14 13 18 18 C 1.33326 * 122.71160 * 84.71458 * 17 16 14 19 19 S 1.76164 * 108.09491 * 179.88412 * 18 17 16 20 20 C 1.70963 * 90.35822 * 0.31392 * 19 18 17 21 21 N 1.38610 * 124.95185 * 179.81357 * 20 19 18 22 22 C 1.47012 * 110.99837 * 123.63555 * 21 20 19 23 23 C 1.53094 * 109.25658 * 177.60964 * 22 21 20 24 24 O 1.43020 * 109.26006 * 56.84956 * 23 22 21 25 25 C 1.43010 * 113.73823 * 301.33407 * 24 23 22 26 26 C 1.47011 * 110.99620 * 0.02562 * 21 20 19 27 27 N 1.29689 * 110.09869 * 359.81925 * 20 19 18 28 28 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 29 29 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 33 33 H 0.96998 * 120.00231 * 354.82990 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 35 35 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 36 36 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 37 37 H 1.07996 * 125.94763 * 359.95789 * 18 17 16 38 38 H 1.09001 * 109.50578 * 297.54575 * 22 21 20 39 39 H 1.08998 * 109.50427 * 57.67502 * 22 21 20 40 40 H 1.08998 * 109.50906 * 296.91201 * 23 22 21 41 41 H 1.09005 * 109.54376 * 176.80702 * 23 22 21 42 42 H 1.09007 * 109.50270 * 298.73390 * 25 24 23 43 43 H 1.08993 * 109.54604 * 178.62493 * 25 24 23 44 44 H 1.09006 * 109.50586 * 302.32122 * 26 21 20 45 45 H 1.08998 * 109.50879 * 62.45336 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1271 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3384 3.8769 2.5624 18 6 -2.4236 3.1357 2.7873 19 16 -3.8410 4.1538 2.5473 20 6 -2.8355 5.4803 2.1572 21 7 -3.2868 6.7465 1.8193 22 6 -2.7129 7.7655 2.7101 23 6 -3.1892 9.1509 2.2655 24 8 -4.6191 9.1791 2.2608 25 6 -5.2115 8.1999 1.4033 26 6 -4.7556 6.8050 1.8396 27 7 -1.5888 5.1291 2.2235 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5318 34 1 2.2902 2.1166 1.9978 35 1 0.0991 2.6017 3.4901 36 1 0.7539 4.1436 2.8885 37 1 -2.4321 2.0931 3.0689 38 1 -3.0390 7.5796 3.7334 39 1 -1.6250 7.7213 2.6603 40 1 -2.8178 9.3588 1.2620 41 1 -2.8125 9.9051 2.9565 42 1 -4.8988 8.3801 0.3747 43 1 -6.2974 8.2655 1.4704 44 1 -5.1591 6.0596 1.1542 45 1 -5.1140 6.6039 2.8491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367395493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:46 Heat of formation + Delta-G solvation = -25.810779 kcal Electronic energy + Delta-G solvation = -27233.727913 eV Core-core repulsion = 23378.451759 eV Total energy + Delta-G solvation = -3855.276154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68422 -39.73229 -38.69105 -36.29391 -35.18379 -32.48200 -31.98333 -31.77004 -31.03313 -28.50970 -27.66258 -26.90313 -24.75770 -23.69755 -22.33394 -21.28381 -20.79515 -19.61961 -19.44821 -18.50216 -17.74851 -16.92456 -16.57839 -16.33499 -15.76985 -15.58202 -15.53128 -15.34965 -15.13399 -14.71105 -14.14828 -13.91251 -13.56414 -13.35551 -13.02585 -12.86825 -12.74291 -12.53470 -12.32717 -12.10218 -12.02619 -11.93135 -11.56747 -11.29122 -11.16737 -10.89936 -10.68851 -10.57573 -10.42784 -10.07893 -9.87891 -9.60964 -9.57949 -9.34841 -9.09987 -8.98947 -8.33380 -8.26057 -8.05720 -6.56963 -4.20892 0.70425 1.10364 1.61049 2.67979 2.86532 3.28368 3.36168 3.39397 3.46102 3.60663 4.09464 4.23383 4.35797 4.42618 4.45424 4.58158 4.64791 4.75572 4.98564 5.05777 5.16590 5.17538 5.23416 5.27148 5.38022 5.42068 5.47886 5.49775 5.69530 5.94493 6.07539 6.08413 6.09905 6.28287 6.40634 6.60616 6.70280 6.79619 6.97198 7.05938 7.37541 7.44055 7.67391 7.76298 8.24376 8.49907 8.72387 9.01840 9.48119 10.83647 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.002574 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.025308 B =10876.889902 C =11333.146560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.040 0.960 5 C -0.615 4.615 6 H 0.061 0.939 7 C 0.039 3.961 8 N -0.899 5.899 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.541 6.541 16 C -0.073 4.073 17 C 0.121 3.879 18 C -0.253 4.253 19 S 0.085 5.915 20 C 0.228 3.772 21 N -0.440 5.440 22 C 0.026 3.974 23 C 0.062 3.938 24 O -0.383 6.383 25 C 0.068 3.932 26 C 0.006 3.994 27 N -0.481 5.481 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.175 0.825 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.015 12.007 11.886 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.653 4.653 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.533 5.533 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.350 5.350 14 C 0.290 3.710 15 O -0.420 6.420 16 C -0.116 4.116 17 C -0.011 4.011 18 C -0.392 4.392 19 S 0.335 5.665 20 C -0.142 4.142 21 N -0.161 5.161 22 C -0.102 4.102 23 C -0.015 4.015 24 O -0.301 6.301 25 C -0.009 4.009 26 C -0.122 4.122 27 N -0.200 5.200 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.225 0.775 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.193 0.807 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.123 11.990 9.194 26.790 hybrid contribution 1.188 -0.314 2.481 2.769 sum -20.936 11.676 11.675 26.663 Atomic orbital electron populations 1.21873 0.97430 0.98722 1.01929 1.22358 0.93745 0.99851 1.01801 1.19026 0.95730 0.88464 0.82320 0.94183 1.22101 0.89751 1.49379 1.04106 0.92048 1.25667 0.97539 0.92391 1.01171 1.70877 1.07063 1.41026 1.34291 0.84118 0.75469 0.77729 0.75904 1.20942 1.19527 1.20644 1.46203 1.14469 1.56210 1.18136 1.20121 0.82827 0.79206 0.88824 1.90683 1.50892 1.59357 1.41023 1.20285 0.91847 1.01273 0.98189 1.19254 0.95863 0.87354 0.98586 1.26388 0.93233 1.05067 1.14539 1.83818 1.12588 1.05035 1.65036 1.25039 0.92129 0.95492 1.01511 1.58545 1.08527 0.99980 1.49049 1.22995 1.02327 0.90828 0.94035 1.22774 0.80817 0.95307 1.02577 1.88012 1.19718 1.55877 1.66488 1.22654 0.98768 0.85012 0.94473 1.23136 0.85034 1.01081 1.02987 1.66122 1.17193 1.17717 1.18960 0.93108 0.95179 0.93332 0.91351 0.93099 0.92137 0.77462 0.87608 0.87471 0.80733 0.92562 0.87565 0.91511 0.87452 0.91469 0.87365 0.88218 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.15 0.32 -2.57 16 2 C -0.14 -3.10 5.28 -26.73 -0.14 -3.25 16 3 C 0.25 5.94 1.82 -69.08 -0.13 5.82 16 4 H 0.04 1.07 6.26 -51.93 -0.32 0.74 16 5 C -0.62 -16.68 9.01 -34.44 -0.31 -16.99 16 6 H 0.06 1.73 7.96 -52.48 -0.42 1.31 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.00 16 8 N -0.90 -26.91 13.70 55.43 0.76 -26.15 16 9 Si 1.04 25.48 26.27 -169.99 -4.47 21.01 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.16 5.67 56.52 0.32 -5.84 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.70 -14.00 5.03 -54.94 -0.28 -14.27 16 14 C 0.51 9.58 6.42 -10.99 -0.07 9.51 16 15 O -0.54 -12.18 13.17 5.56 0.07 -12.11 16 16 C -0.07 -1.03 6.11 -29.04 -0.18 -1.21 16 17 C 0.12 1.82 5.23 -84.18 -0.44 1.38 16 18 C -0.25 -3.35 11.11 29.02 0.32 -3.02 16 19 S 0.08 0.97 21.18 -107.50 -2.28 -1.30 16 20 C 0.23 3.07 6.81 -87.68 -0.60 2.47 16 21 N -0.44 -4.96 4.80 -175.08 -0.84 -5.80 16 22 C 0.03 0.24 5.55 -3.71 -0.02 0.22 16 23 C 0.06 0.48 7.01 37.21 0.26 0.74 16 24 O -0.38 -3.32 10.83 -35.23 -0.38 -3.70 16 25 C 0.07 0.47 7.01 37.21 0.26 0.74 16 26 C 0.01 0.05 4.67 -3.71 -0.02 0.03 16 27 N -0.48 -7.59 10.27 -11.36 -0.12 -7.71 16 28 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.96 5.63 -51.92 -0.29 0.67 16 31 H 0.07 1.61 4.74 -51.92 -0.25 1.36 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 34 H 0.39 6.87 8.53 -40.82 -0.35 6.52 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.11 1.09 7.92 -51.93 -0.41 0.68 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.77 7.65 -51.93 -0.40 0.37 16 45 H 0.06 0.50 7.88 -51.93 -0.41 0.09 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -34.32 369.48 -9.51 -43.82 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.72 Total: 5.78 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.83 Total: -5.13 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.47 Total: -53.94 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.31 Total: -15.81 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.47 Total: 21.01 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.28 Total: -1.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.32 -9.51 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367395493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.014 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds