Wall clock time and date at job start Wed Apr 1 2020 00:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37875 * 120.00189 * 65.60701 * 5 3 2 8 8 N 1.31514 * 119.99893 * 196.28606 * 7 5 3 9 9 Si 1.86797 * 120.00240 * 16.28455 * 7 5 3 10 10 H 1.48499 * 109.47249 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47013 * 300.00122 * 9 7 5 12 12 H 1.48500 * 109.47061 * 59.99764 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47372 * 180.02562 * 16 14 13 18 18 C 1.33326 * 122.71160 * 84.71458 * 17 16 14 19 19 S 1.76164 * 108.09491 * 179.88412 * 18 17 16 20 20 C 1.70963 * 90.35822 * 0.31392 * 19 18 17 21 21 N 1.38610 * 124.95185 * 179.81357 * 20 19 18 22 22 C 1.47012 * 110.99837 * 123.63555 * 21 20 19 23 23 C 1.53094 * 109.25658 * 177.60964 * 22 21 20 24 24 O 1.43020 * 109.26006 * 56.84956 * 23 22 21 25 25 C 1.43010 * 113.73823 * 301.33407 * 24 23 22 26 26 C 1.47011 * 110.99620 * 0.02562 * 21 20 19 27 27 N 1.29689 * 110.09869 * 359.81925 * 20 19 18 28 28 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 29 29 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 33 33 H 0.96998 * 120.00231 * 354.82990 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 35 35 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 36 36 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 37 37 H 1.07996 * 125.94763 * 359.95789 * 18 17 16 38 38 H 1.09001 * 109.50578 * 297.54575 * 22 21 20 39 39 H 1.08998 * 109.50427 * 57.67502 * 22 21 20 40 40 H 1.08998 * 109.50906 * 296.91201 * 23 22 21 41 41 H 1.09005 * 109.54376 * 176.80702 * 23 22 21 42 42 H 1.09007 * 109.50270 * 298.73390 * 25 24 23 43 43 H 1.08993 * 109.54604 * 178.62493 * 25 24 23 44 44 H 1.09006 * 109.50586 * 302.32122 * 26 21 20 45 45 H 1.08998 * 109.50879 * 62.45336 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1271 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3384 3.8769 2.5624 18 6 -2.4236 3.1357 2.7873 19 16 -3.8410 4.1538 2.5473 20 6 -2.8355 5.4803 2.1572 21 7 -3.2868 6.7465 1.8193 22 6 -2.7129 7.7655 2.7101 23 6 -3.1892 9.1509 2.2655 24 8 -4.6191 9.1791 2.2608 25 6 -5.2115 8.1999 1.4033 26 6 -4.7556 6.8050 1.8396 27 7 -1.5888 5.1291 2.2235 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5318 34 1 2.2902 2.1166 1.9978 35 1 0.0991 2.6017 3.4901 36 1 0.7539 4.1436 2.8885 37 1 -2.4321 2.0931 3.0689 38 1 -3.0390 7.5796 3.7334 39 1 -1.6250 7.7213 2.6603 40 1 -2.8178 9.3588 1.2620 41 1 -2.8125 9.9051 2.9565 42 1 -4.8988 8.3801 0.3747 43 1 -6.2974 8.2655 1.4704 44 1 -5.1591 6.0596 1.1542 45 1 -5.1140 6.6039 2.8491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367395493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:45 Heat of formation + Delta-G solvation = -51.759056 kcal Electronic energy + Delta-G solvation = -27234.853115 eV Core-core repulsion = 23378.451759 eV Total energy + Delta-G solvation = -3856.401356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59543 -40.85649 -39.90628 -37.22849 -36.81285 -34.46256 -33.49820 -32.48570 -32.26377 -29.72522 -28.69376 -28.41756 -25.40884 -24.77125 -24.15785 -22.51118 -21.81699 -21.23560 -20.60367 -19.84589 -19.27490 -17.90881 -17.80425 -17.20182 -17.16824 -16.60139 -16.37905 -16.26129 -16.08109 -15.77509 -15.65607 -15.14606 -14.89714 -14.58246 -14.50459 -14.31830 -14.17328 -13.99900 -13.72388 -13.50357 -13.02979 -12.75336 -12.69092 -12.54354 -12.47923 -12.29937 -12.28132 -11.83256 -11.79684 -11.40719 -11.39540 -11.11644 -10.83750 -10.75303 -10.52824 -10.49136 -10.13706 -9.77911 -9.17731 -8.79920 -6.44843 -0.25873 0.18102 0.65296 1.42187 1.47638 1.63021 1.67487 1.81311 2.04884 2.38741 2.67077 2.80430 3.00101 3.41983 3.66381 3.74857 3.88140 3.96375 4.06930 4.10435 4.20142 4.28821 4.32740 4.38370 4.41246 4.48678 4.55943 4.58756 4.67322 4.70396 4.73744 4.84375 4.86563 5.00615 5.10229 5.23107 5.31427 5.34190 5.52416 5.55582 5.68838 5.69752 6.00939 6.02044 6.53265 6.79294 6.88527 7.28418 7.49218 8.59260 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.002574 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.025308 B =10876.889902 C =11333.146560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.253 3.747 4 H 0.015 0.985 5 C -0.611 4.611 6 H 0.041 0.959 7 C -0.005 4.005 8 N -0.929 5.929 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.243 1.243 12 H -0.280 1.280 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.577 6.577 16 C -0.061 4.061 17 C 0.096 3.904 18 C -0.263 4.263 19 S 0.137 5.863 20 C 0.214 3.786 21 N -0.455 5.455 22 C 0.029 3.971 23 C 0.066 3.934 24 O -0.393 6.393 25 C 0.068 3.932 26 C 0.003 3.997 27 N -0.520 5.520 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.258 0.742 34 H 0.404 0.596 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.193 0.807 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.128 0.872 42 H 0.065 0.935 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.702 12.048 12.912 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C 0.148 3.852 4 H 0.033 0.967 5 C -0.649 4.649 6 H 0.060 0.940 7 C -0.206 4.206 8 N -0.564 5.564 9 Si 0.893 3.107 10 H -0.207 1.207 11 H -0.168 1.168 12 H -0.206 1.206 13 N -0.352 5.352 14 C 0.293 3.707 15 O -0.458 6.458 16 C -0.103 4.103 17 C -0.036 4.036 18 C -0.403 4.403 19 S 0.388 5.612 20 C -0.156 4.156 21 N -0.177 5.177 22 C -0.099 4.099 23 C -0.011 4.011 24 O -0.312 6.312 25 C -0.009 4.009 26 C -0.124 4.124 27 N -0.240 5.240 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.239 0.761 35 H 0.162 0.838 36 H 0.134 0.866 37 H 0.210 0.790 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.122 0.878 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.831 12.047 10.264 29.446 hybrid contribution 1.967 -0.238 2.212 2.969 sum -22.864 11.809 12.475 28.598 Atomic orbital electron populations 1.21745 0.95502 1.00248 1.01350 1.22233 0.95363 0.98208 1.01556 1.18702 0.93291 0.89721 0.83494 0.96716 1.22309 0.91612 1.47827 1.03167 0.94044 1.26742 0.97723 0.92253 1.03861 1.70973 1.08002 1.43428 1.34043 0.83728 0.75220 0.78384 0.73361 1.20716 1.16794 1.20599 1.46045 1.15538 1.56482 1.17182 1.20864 0.81617 0.78155 0.90058 1.90662 1.51795 1.60517 1.42776 1.20248 0.91987 1.01944 0.96169 1.19381 0.96469 0.87678 1.00043 1.26740 0.93795 1.06060 1.13696 1.83544 1.10757 1.03211 1.63717 1.25403 0.92293 0.96809 1.01073 1.58611 1.10229 0.99546 1.49307 1.22988 1.01510 0.91331 0.94029 1.22828 0.80605 0.94712 1.02921 1.88002 1.19981 1.56319 1.66871 1.22817 1.00192 0.83832 0.94031 1.23282 0.83312 1.02162 1.03632 1.66113 1.18783 1.18557 1.20557 0.94753 0.92502 0.92873 0.92579 0.92350 0.93230 0.76089 0.83842 0.86593 0.79002 0.92207 0.89014 0.91887 0.85373 0.91674 0.84659 0.87774 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 8.53 71.98 0.61 -4.43 16 2 C -0.13 -5.84 5.28 30.59 0.16 -5.68 16 3 C 0.25 12.03 1.82 44.24 0.08 12.11 16 4 H 0.02 0.80 6.26 -2.39 -0.01 0.78 16 5 C -0.61 -33.49 9.01 25.60 0.23 -33.26 16 6 H 0.04 2.39 7.96 -2.91 -0.02 2.36 16 7 C -0.01 -0.29 5.32 84.65 0.45 0.16 16 8 N -0.93 -56.63 13.70 21.45 0.29 -56.34 16 9 Si 1.07 51.47 26.27 68.60 1.80 53.28 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.24 -10.63 5.67 99.48 0.56 -10.07 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 13 N -0.70 -27.47 5.03 -446.11 -2.24 -29.71 16 14 C 0.51 18.59 6.42 87.66 0.56 19.15 16 15 O -0.58 -25.59 13.17 -3.03 -0.04 -25.63 16 16 C -0.06 -1.62 6.11 29.10 0.18 -1.44 16 17 C 0.10 2.75 5.23 41.40 0.22 2.97 16 18 C -0.26 -6.42 11.11 66.71 0.74 -5.68 16 19 S 0.14 2.86 21.18 -56.49 -1.20 1.66 16 20 C 0.21 5.53 6.81 179.32 1.22 6.75 16 21 N -0.46 -9.84 4.80 -707.82 -3.39 -13.24 16 22 C 0.03 0.53 5.55 86.31 0.48 1.00 16 23 C 0.07 0.94 7.01 72.01 0.50 1.44 16 24 O -0.39 -6.08 10.83 -148.98 -1.61 -7.69 16 25 C 0.07 0.81 7.01 72.02 0.50 1.32 16 26 C 0.00 0.05 4.67 86.32 0.40 0.45 16 27 N -0.52 -16.10 10.27 -189.86 -1.95 -18.05 16 28 H 0.03 1.42 7.88 -2.39 -0.02 1.40 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.98 5.63 -2.38 -0.01 1.97 16 31 H 0.06 2.55 4.74 -2.38 -0.01 2.54 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16 34 H 0.40 13.79 8.53 -92.71 -0.79 12.99 16 35 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.19 3.80 8.06 -2.91 -0.02 3.77 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.91 7.92 -2.39 -0.02 1.89 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 1.41 7.65 -2.38 -0.02 1.39 16 45 H 0.07 0.96 7.88 -2.39 -0.02 0.94 16 Total: -1.00 -74.87 369.48 -1.95 -76.82 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.04 Total: 24.04 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.35 Total: -5.14 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.29 Total: -117.34 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.65 Total: -33.32 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.80 Total: 53.28 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.20 Total: 1.66 kcal Total: -74.87 -1.95 -76.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367395493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.066 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds