Wall clock time and date at job start Tue Mar 31 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33532 * 125.97146 * 89.99958 * 4 3 2 6 6 N 1.31902 * 114.56911 * 179.97438 * 5 4 3 7 7 C 1.29684 * 116.92476 * 0.02562 * 6 5 4 8 8 N 1.38749 * 124.94425 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99819 * 359.97438 * 8 7 6 10 10 O 1.21372 * 120.00252 * 359.97438 * 9 8 7 11 11 C 1.49309 * 119.99449 * 179.97438 * 9 8 7 12 12 O 1.21364 * 120.00524 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99765 * 179.97438 * 11 9 8 14 14 C 1.46505 * 120.00423 * 180.02562 * 13 11 9 15 15 C 1.52995 * 109.47481 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46866 * 299.99983 * 15 14 13 17 17 C 1.53004 * 109.47212 * 59.99692 * 15 14 13 18 18 C 1.50694 * 109.47120 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00209 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99715 * 179.97438 * 18 15 14 21 21 N 1.31511 * 119.99939 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99495 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47484 * 60.00250 * 22 20 18 24 24 H 1.48500 * 109.46751 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46900 * 299.99647 * 22 20 18 26 26 S 1.70965 * 110.11258 * 359.76244 * 7 6 5 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.08008 * 122.71368 * 359.96414 * 5 4 3 35 35 H 0.97001 * 119.99787 * 179.97438 * 8 7 6 36 36 H 0.97007 * 119.99858 * 0.02562 * 13 11 9 37 37 H 1.09000 * 109.46466 * 300.00445 * 14 13 11 38 38 H 1.08993 * 109.46787 * 59.99911 * 14 13 11 39 39 H 1.08999 * 109.46984 * 60.00033 * 16 15 14 40 40 H 1.09005 * 109.46715 * 179.97438 * 16 15 14 41 41 H 1.08993 * 109.47133 * 300.00201 * 16 15 14 42 42 H 1.09005 * 109.46606 * 60.00268 * 17 15 14 43 43 H 1.08999 * 109.46900 * 180.02562 * 17 15 14 44 44 H 1.08999 * 109.47411 * 300.00441 * 17 15 14 45 45 H 0.96999 * 119.99233 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3318 1.4422 -1.0797 6 7 5.6247 1.4427 -0.8184 7 6 5.9712 1.4428 0.4313 8 7 7.2796 1.4428 0.8932 9 6 8.3036 1.4422 0.0169 10 8 8.0813 1.4411 -1.1763 11 6 9.7114 1.4428 0.5140 12 8 9.9338 1.4433 1.7072 13 7 10.7355 1.4416 -0.3622 14 6 12.1170 1.4416 0.1255 15 6 13.0781 1.4408 -1.0649 16 6 12.8371 0.1911 -1.9141 17 6 12.8375 2.6896 -1.9155 18 6 14.4991 1.4415 -0.5632 19 1 14.6969 1.4419 0.4985 20 6 15.5467 1.4404 -1.4597 21 7 15.3058 1.4393 -2.7526 22 14 17.3081 1.4405 -0.8378 23 1 17.5416 0.2287 -0.0118 24 1 18.2410 1.4398 -1.9932 25 1 17.5421 2.6537 -0.0140 26 16 4.5813 1.4489 1.4268 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9396 1.4415 -2.0861 35 1 7.4572 1.4433 1.8468 36 1 10.5578 1.4408 -1.3159 37 1 12.2887 2.3321 0.7301 38 1 12.2882 0.5522 0.7317 39 1 11.8093 0.1911 -2.2770 40 1 13.5216 0.1908 -2.7625 41 1 13.0084 -0.6985 -1.3082 42 1 13.0093 3.5799 -1.3105 43 1 13.5220 2.6888 -2.7638 44 1 11.8097 2.6897 -2.2784 45 1 16.0428 1.4389 -3.3832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411640345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:12 Heat of formation + Delta-G solvation = -47.813543 kcal Electronic energy + Delta-G solvation = -26206.500021 eV Core-core repulsion = 22350.269756 eV Total energy + Delta-G solvation = -3856.230265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.17798 -40.81759 -39.63554 -38.25092 -36.83314 -35.74811 -34.97865 -32.77856 -31.28740 -28.57860 -27.59873 -27.49523 -27.04940 -25.93814 -24.43967 -22.75870 -22.04370 -20.86443 -20.70450 -20.28294 -18.62823 -17.98590 -17.83088 -17.37206 -17.31485 -16.63771 -16.25958 -16.15863 -15.73979 -15.64649 -15.20337 -15.18109 -14.78795 -14.64233 -14.41786 -14.06808 -14.00774 -13.26874 -13.22399 -13.15361 -12.96157 -12.69049 -12.62338 -12.58597 -12.28523 -12.27115 -12.24281 -12.12454 -11.82104 -11.51729 -11.49934 -11.35951 -11.09867 -10.73777 -10.41360 -10.39232 -10.26136 -10.19247 -9.29630 -8.01101 -6.17758 -0.52680 -0.19461 0.34161 0.58317 1.19814 1.46713 1.47974 1.54315 1.76026 2.10781 2.33264 2.49053 3.17590 3.22906 3.60509 3.84754 4.07922 4.20626 4.31590 4.41196 4.46154 4.61321 4.66413 4.71239 4.86820 4.87750 4.89909 5.00528 5.01959 5.02680 5.10305 5.16020 5.16115 5.28774 5.35175 5.45902 5.48758 5.55794 5.63684 5.67678 6.10039 6.10047 6.18061 6.39718 6.44898 6.76869 6.86493 6.88272 7.50228 8.97990 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037790 B = 0.001862 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.764184 B =15034.030348 C =15436.587821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.036 4.036 4 C -0.222 4.222 5 C 0.042 3.958 6 N -0.512 5.512 7 C 0.226 3.774 8 N -0.603 5.603 9 C 0.511 3.489 10 O -0.477 6.477 11 C 0.509 3.491 12 O -0.542 6.542 13 N -0.677 5.677 14 C 0.143 3.857 15 C 0.048 3.952 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.526 4.526 19 H 0.054 0.946 20 C 0.026 3.974 21 N -0.901 5.901 22 Si 0.949 3.051 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.275 1.275 26 S 0.197 5.803 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.444 0.556 36 H 0.414 0.586 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.256 -0.559 7.479 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.076 4.076 4 C -0.344 4.344 5 C -0.109 4.109 6 N -0.234 5.234 7 C -0.141 4.141 8 N -0.257 5.257 9 C 0.289 3.711 10 O -0.345 6.345 11 C 0.289 3.711 12 O -0.420 6.420 13 N -0.329 5.329 14 C 0.021 3.979 15 C 0.048 3.952 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.564 4.564 19 H 0.072 0.928 20 C -0.174 4.174 21 N -0.540 5.540 22 Si 0.775 3.225 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 S 0.449 5.551 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.208 0.792 35 H 0.286 0.714 36 H 0.252 0.748 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -28.737 -0.549 7.961 29.824 hybrid contribution 1.276 -0.043 -0.843 1.530 sum -27.461 -0.592 7.117 28.375 Atomic orbital electron populations 1.21761 0.94321 1.02205 1.02543 1.21562 0.96716 0.95267 1.02300 1.20213 0.83959 0.98447 1.04996 1.26281 1.02416 1.12279 0.93412 1.21814 0.85126 1.02390 1.01549 1.66503 1.19787 1.19592 1.17489 1.23739 0.91171 1.05780 0.93375 1.42498 1.00711 1.70470 1.11995 1.20430 0.86401 0.77871 0.86417 1.90870 1.84822 1.43030 1.15806 1.19775 0.85794 0.79028 0.86552 1.90739 1.85419 1.50265 1.15612 1.46077 1.06251 1.69596 1.10956 1.21623 0.77630 1.00822 0.97869 1.18409 0.92576 0.93281 0.90973 1.21708 0.98274 0.97163 1.01022 1.21707 0.98268 0.97160 1.01014 1.21198 0.90947 1.51395 0.92876 0.92819 1.25507 1.02127 0.94670 0.95081 1.69924 1.32113 1.50511 1.01406 0.85760 0.80507 0.78542 0.77648 1.20064 1.21248 1.20066 1.83682 0.93372 1.69841 1.08247 0.91991 0.91983 0.92481 0.92122 0.92210 0.89176 0.88064 0.79154 0.71446 0.74842 0.92221 0.92222 0.95329 0.91823 0.95638 0.95634 0.91832 0.95333 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 71.98 0.71 -0.20 16 2 C -0.12 -1.00 5.92 30.59 0.18 -0.82 16 3 C -0.04 -0.30 5.75 29.85 0.17 -0.13 16 4 C -0.22 -3.27 5.84 24.62 0.14 -3.13 16 5 C 0.04 0.84 11.24 83.62 0.94 1.78 16 6 N -0.51 -14.36 8.64 -201.91 -1.74 -16.10 16 7 C 0.23 5.47 8.01 179.27 1.44 6.91 16 8 N -0.60 -15.02 5.39 -315.14 -1.70 -16.72 16 9 C 0.51 16.02 7.85 87.23 0.68 16.71 16 10 O -0.48 -17.50 15.10 -3.31 -0.05 -17.55 16 11 C 0.51 17.18 7.88 87.23 0.69 17.87 16 12 O -0.54 -19.37 16.48 -3.29 -0.05 -19.43 16 13 N -0.68 -24.41 4.95 -464.55 -2.30 -26.71 16 14 C 0.14 5.82 4.50 86.38 0.39 6.21 16 15 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 16 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 17 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 18 C -0.53 -27.09 8.01 25.60 0.21 -26.88 16 19 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 20 C 0.03 1.35 5.15 84.66 0.44 1.79 16 21 N -0.90 -48.31 9.35 21.45 0.20 -48.11 16 22 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 26 S 0.20 2.99 23.22 -56.49 -1.31 1.68 16 27 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.44 8.65 8.29 -92.71 -0.77 7.88 16 36 H 0.41 14.78 5.63 -92.70 -0.52 14.25 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 40 H 0.06 3.23 6.07 -2.38 -0.01 3.21 16 41 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.02 1.12 8.14 -2.38 -0.02 1.11 16 43 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 44 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 45 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -63.59 384.15 1.93 -61.66 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.26 Total: 25.00 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 7.12 Total: 12.20 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -5.54 Total: -107.64 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.10 Total: -36.98 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.31 Total: 1.68 kcal Total: -63.59 1.93 -61.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411640345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds