Wall clock time and date at job start Tue Mar 31 2020 22:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.31783 * 122.85429 * 59.70968 * 4 2 1 6 6 C 1.28966 * 117.20831 * 179.79101 * 5 4 2 7 7 S 1.70954 * 110.32853 * 0.46104 * 6 5 4 8 8 C 1.34514 * 122.85808 * 240.00203 * 4 2 1 9 9 N 1.39427 * 126.07814 * 359.95359 * 8 4 2 10 10 C 1.34775 * 120.00037 * 179.97438 * 9 8 4 11 11 O 1.21417 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.49258 * 120.00046 * 180.02562 * 10 9 8 13 13 O 1.21368 * 119.99868 * 0.02562 * 12 10 9 14 14 N 1.34776 * 120.00046 * 180.02562 * 12 10 9 15 15 C 1.46497 * 120.00072 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47351 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47204 * 300.00261 * 16 15 14 18 18 C 1.52998 * 109.46671 * 60.00039 * 16 15 14 19 19 C 1.50698 * 109.47347 * 180.02562 * 16 15 14 20 20 H 1.08000 * 119.99748 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00185 * 180.02562 * 19 16 15 22 22 N 1.31517 * 119.99908 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00034 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47145 * 90.00087 * 23 21 19 25 25 H 1.48500 * 109.46999 * 209.99836 * 23 21 19 26 26 H 1.48497 * 109.47163 * 329.99618 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.08007 * 124.83893 * 180.22863 * 6 5 4 35 35 H 0.97000 * 119.99338 * 0.02562 * 9 8 4 36 36 H 0.96996 * 119.99821 * 359.97438 * 14 12 10 37 37 H 1.09001 * 109.47399 * 300.00288 * 15 14 12 38 38 H 1.09009 * 109.46806 * 59.99832 * 15 14 12 39 39 H 1.09003 * 109.47048 * 59.99387 * 17 16 15 40 40 H 1.08997 * 109.47465 * 179.97438 * 17 16 15 41 41 H 1.09009 * 109.47124 * 299.99985 * 17 16 15 42 42 H 1.08996 * 109.47122 * 60.00540 * 18 16 15 43 43 H 1.09007 * 109.46648 * 180.02562 * 18 16 15 44 44 H 1.08993 * 109.47324 * 299.99803 * 18 16 15 45 45 H 0.97001 * 119.99987 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7442 -0.3127 -2.4534 6 6 2.2358 -0.9995 -3.4280 7 16 3.1598 -2.3062 -2.8271 8 6 2.8082 -1.8078 -1.1740 9 7 3.2553 -2.4385 -0.0137 10 6 4.0312 -3.5370 -0.0999 11 8 4.3414 -3.9772 -1.1882 12 6 4.5093 -4.2125 1.1422 13 8 4.1988 -3.7727 2.2300 14 7 5.2857 -5.3108 1.0560 15 6 5.7554 -5.9734 2.2752 16 6 6.6109 -7.1851 1.8999 17 6 5.7732 -8.1657 1.0769 18 6 7.8137 -6.7240 1.0743 19 6 7.0936 -7.8671 3.1541 20 1 6.8180 -7.4752 4.1220 21 6 7.8877 -8.9907 3.0658 22 7 8.2237 -9.4676 1.8871 23 14 8.4854 -9.8365 4.6205 24 1 7.5004 -10.8687 5.0323 25 1 9.7979 -10.4806 4.3603 26 1 8.6330 -8.8325 5.7047 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 2.0822 -0.7825 -4.4749 35 1 3.0071 -2.0869 0.8557 36 1 5.5335 -5.6624 0.1866 37 1 6.3519 -5.2747 2.8618 38 1 4.8984 -6.3022 2.8632 39 1 5.4237 -7.6726 0.1697 40 1 6.3827 -9.0287 0.8091 41 1 4.9162 -8.4941 1.6650 42 1 8.4105 -6.0255 1.6607 43 1 8.4230 -7.5873 0.8066 44 1 7.4643 -6.2310 0.1672 45 1 8.7821 -10.2583 1.8250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411650578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:33 Heat of formation + Delta-G solvation = -35.902179 kcal Electronic energy + Delta-G solvation = -26986.075259 eV Core-core repulsion = 23130.361509 eV Total energy + Delta-G solvation = -3855.713750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11480 -40.11586 -38.68124 -36.66319 -35.63070 -34.89821 -33.44408 -31.00636 -29.42652 -27.36401 -26.66142 -25.80516 -25.55340 -25.13170 -23.51533 -22.78390 -20.73859 -19.81273 -19.17346 -18.48440 -17.91137 -16.77934 -16.72905 -16.24633 -15.87797 -15.18778 -15.01940 -14.84198 -14.57988 -14.38795 -14.17600 -14.13286 -13.76696 -13.11411 -13.01655 -12.89662 -12.52332 -12.34734 -12.31888 -11.84134 -11.62449 -11.48955 -11.42244 -11.27173 -11.21555 -11.08961 -10.94577 -10.76252 -10.48199 -10.27116 -9.92624 -9.74192 -9.62317 -9.41198 -9.21434 -8.88643 -8.78960 -8.44382 -8.38418 -6.08916 -4.20052 0.37870 0.89848 1.38657 1.58337 2.21405 2.57967 3.17113 3.24092 3.31608 3.34509 3.60616 4.01621 4.32924 4.50187 4.52794 4.70993 4.91142 4.95593 5.17095 5.18025 5.43731 5.52054 5.61567 5.63139 5.68339 5.95009 5.98068 6.00795 6.11258 6.11873 6.35390 6.43461 6.53220 6.73087 6.75838 6.83313 6.91473 7.21215 7.28117 7.46919 7.54714 7.60067 7.67334 7.92459 8.00767 8.12218 8.30450 8.80091 9.46353 10.92551 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024383 B = 0.002308 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.081718 B =12127.600646 C =12908.715084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.015 4.015 3 C -0.140 4.140 4 C 0.023 3.977 5 N -0.441 5.441 6 C -0.043 4.043 7 S 0.238 5.762 8 C -0.004 4.004 9 N -0.602 5.602 10 C 0.499 3.501 11 O -0.487 6.487 12 C 0.505 3.495 13 O -0.527 6.527 14 N -0.673 5.673 15 C 0.127 3.873 16 C 0.056 3.944 17 C -0.134 4.134 18 C -0.135 4.135 19 C -0.509 4.509 20 H 0.059 0.941 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.198 0.802 35 H 0.430 0.570 36 H 0.412 0.588 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.008 0.992 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.088 0.912 44 H 0.008 0.992 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 16.597 -8.619 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 C -0.197 4.197 4 C -0.113 4.113 5 N -0.154 5.154 6 C -0.341 4.341 7 S 0.489 5.511 8 C -0.223 4.223 9 N -0.250 5.250 10 C 0.281 3.719 11 O -0.361 6.361 12 C 0.283 3.717 13 O -0.405 6.405 14 N -0.325 5.325 15 C 0.006 3.994 16 C 0.056 3.944 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.547 4.547 20 H 0.077 0.923 21 C -0.134 4.134 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.214 0.786 35 H 0.271 0.729 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.027 0.973 40 H 0.107 0.893 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.107 0.893 44 H 0.027 0.973 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.302 16.005 -9.277 21.679 hybrid contribution 0.034 -0.064 1.456 1.457 sum -11.268 15.941 -7.822 21.030 Atomic orbital electron populations 1.21774 0.93573 1.02012 1.02390 1.19638 0.96559 0.95968 0.91506 1.21771 1.00947 0.94643 1.02388 1.20057 1.01829 0.95312 0.94138 1.66069 1.21851 1.29713 0.97798 1.28497 1.03170 0.99098 1.03296 1.84979 1.46804 1.26371 0.92987 1.23537 1.05813 0.99788 0.93123 1.42532 1.48070 1.26679 1.07756 1.20975 0.78964 0.80745 0.91253 1.90732 1.54215 1.62506 1.28601 1.19365 0.81616 0.82916 0.87818 1.90771 1.57245 1.64660 1.27841 1.46238 1.47231 1.25709 1.13299 1.22040 0.98346 0.95360 0.83701 1.18387 0.91165 0.89174 0.95694 1.21873 0.99018 1.02109 0.96220 1.21869 1.00023 1.01114 0.96218 1.20927 1.31254 1.11033 0.91519 0.92302 1.24881 0.95689 0.96773 0.96107 1.69801 1.36775 1.23187 1.22448 0.86545 0.78132 0.79689 0.83355 1.20668 1.21220 1.19882 0.91631 0.92129 0.92827 0.90653 0.91635 0.92133 0.92821 0.78556 0.72917 0.74990 0.91681 0.91689 0.97321 0.89341 0.95267 0.95259 0.89338 0.97312 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.14 37.16 0.34 -0.82 16 2 C -0.02 -0.14 3.26 -91.77 -0.30 -0.44 16 3 C -0.14 -1.16 9.14 37.15 0.34 -0.82 16 4 C 0.02 0.26 5.34 -83.93 -0.45 -0.19 16 5 N -0.44 -4.91 10.43 -11.72 -0.12 -5.04 16 6 C -0.04 -0.40 12.21 51.56 0.63 0.23 16 7 S 0.24 2.58 20.45 -107.50 -2.20 0.38 16 8 C 0.00 -0.05 7.17 -15.41 -0.11 -0.16 16 9 N -0.60 -7.24 5.39 -11.10 -0.06 -7.30 16 10 C 0.50 7.09 7.85 -11.68 -0.09 7.00 16 11 O -0.49 -7.45 14.10 5.44 0.08 -7.37 16 12 C 0.50 8.13 7.88 -11.68 -0.09 8.04 16 13 O -0.53 -9.30 16.47 5.48 0.09 -9.21 16 14 N -0.67 -11.56 4.95 -60.79 -0.30 -11.86 16 15 C 0.13 2.50 4.50 -4.04 -0.02 2.48 16 16 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 19 C -0.51 -12.79 8.01 -34.44 -0.28 -13.06 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 22 N -0.88 -23.02 9.35 55.43 0.52 -22.50 16 23 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.62 6.48 -51.93 -0.34 0.28 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.20 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.43 4.52 6.67 -40.82 -0.27 4.25 16 36 H 0.41 6.91 5.63 -40.82 -0.23 6.68 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 39 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 40 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 41 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 44 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 45 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -27.65 378.50 -7.28 -34.94 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.37 Total: 7.38 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 0.40 Total: -0.25 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.04 Total: -46.70 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.17 Total: -16.58 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.20 Total: 0.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.65 -7.28 -34.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411650578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.965 kcal (2) G-P(sol) polarization free energy of solvation -27.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds