Wall clock time and date at job start Tue Mar 31 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.31783 * 122.85429 * 59.70968 * 4 2 1 6 6 C 1.28966 * 117.20831 * 179.79101 * 5 4 2 7 7 S 1.70954 * 110.32853 * 0.46104 * 6 5 4 8 8 C 1.34514 * 122.85808 * 240.00203 * 4 2 1 9 9 N 1.39427 * 126.07814 * 359.95359 * 8 4 2 10 10 C 1.34775 * 120.00037 * 179.97438 * 9 8 4 11 11 O 1.21417 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.49258 * 120.00046 * 180.02562 * 10 9 8 13 13 O 1.21368 * 119.99868 * 0.02562 * 12 10 9 14 14 N 1.34776 * 120.00046 * 180.02562 * 12 10 9 15 15 C 1.46497 * 120.00072 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47351 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47204 * 300.00261 * 16 15 14 18 18 C 1.52998 * 109.46671 * 60.00039 * 16 15 14 19 19 C 1.50698 * 109.47347 * 180.02562 * 16 15 14 20 20 H 1.08000 * 119.99748 * 359.97438 * 19 16 15 21 21 C 1.37875 * 120.00185 * 180.02562 * 19 16 15 22 22 N 1.31517 * 119.99908 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00034 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47145 * 90.00087 * 23 21 19 25 25 H 1.48500 * 109.46999 * 209.99836 * 23 21 19 26 26 H 1.48497 * 109.47163 * 329.99618 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.08007 * 124.83893 * 180.22863 * 6 5 4 35 35 H 0.97000 * 119.99338 * 0.02562 * 9 8 4 36 36 H 0.96996 * 119.99821 * 359.97438 * 14 12 10 37 37 H 1.09001 * 109.47399 * 300.00288 * 15 14 12 38 38 H 1.09009 * 109.46806 * 59.99832 * 15 14 12 39 39 H 1.09003 * 109.47048 * 59.99387 * 17 16 15 40 40 H 1.08997 * 109.47465 * 179.97438 * 17 16 15 41 41 H 1.09009 * 109.47124 * 299.99985 * 17 16 15 42 42 H 1.08996 * 109.47122 * 60.00540 * 18 16 15 43 43 H 1.09007 * 109.46648 * 180.02562 * 18 16 15 44 44 H 1.08993 * 109.47324 * 299.99803 * 18 16 15 45 45 H 0.97001 * 119.99987 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7442 -0.3127 -2.4534 6 6 2.2358 -0.9995 -3.4280 7 16 3.1598 -2.3062 -2.8271 8 6 2.8082 -1.8078 -1.1740 9 7 3.2553 -2.4385 -0.0137 10 6 4.0312 -3.5370 -0.0999 11 8 4.3414 -3.9772 -1.1882 12 6 4.5093 -4.2125 1.1422 13 8 4.1988 -3.7727 2.2300 14 7 5.2857 -5.3108 1.0560 15 6 5.7554 -5.9734 2.2752 16 6 6.6109 -7.1851 1.8999 17 6 5.7732 -8.1657 1.0769 18 6 7.8137 -6.7240 1.0743 19 6 7.0936 -7.8671 3.1541 20 1 6.8180 -7.4752 4.1220 21 6 7.8877 -8.9907 3.0658 22 7 8.2237 -9.4676 1.8871 23 14 8.4854 -9.8365 4.6205 24 1 7.5004 -10.8687 5.0323 25 1 9.7979 -10.4806 4.3603 26 1 8.6330 -8.8325 5.7047 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 2.0822 -0.7825 -4.4749 35 1 3.0071 -2.0869 0.8557 36 1 5.5335 -5.6624 0.1866 37 1 6.3519 -5.2747 2.8618 38 1 4.8984 -6.3022 2.8632 39 1 5.4237 -7.6726 0.1697 40 1 6.3827 -9.0287 0.8091 41 1 4.9162 -8.4941 1.6650 42 1 8.4105 -6.0255 1.6607 43 1 8.4230 -7.5873 0.8066 44 1 7.4643 -6.2310 0.1672 45 1 8.7821 -10.2583 1.8250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411650578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:29 Heat of formation + Delta-G solvation = -52.998410 kcal Electronic energy + Delta-G solvation = -26986.816607 eV Core-core repulsion = 23130.361509 eV Total energy + Delta-G solvation = -3856.455098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 10.20 seconds Orbital eigenvalues (eV) -42.21338 -41.06344 -39.93792 -38.26856 -36.63719 -35.69282 -35.01562 -32.79166 -30.33811 -28.03414 -28.01022 -27.58982 -27.26756 -26.29944 -24.75778 -23.54505 -21.93159 -20.84607 -20.66433 -19.77889 -18.79291 -18.02625 -17.72816 -17.56264 -17.39507 -16.63369 -16.47208 -16.09308 -15.51819 -15.33426 -15.22538 -15.04914 -14.87126 -14.79402 -14.44328 -14.06466 -13.78808 -13.35329 -13.22937 -13.13996 -12.97696 -12.94718 -12.71274 -12.59708 -12.57866 -12.28403 -12.12779 -12.09869 -11.89655 -11.85089 -11.51530 -11.35208 -11.00004 -10.72033 -10.48087 -10.42213 -10.20854 -10.05259 -9.26208 -8.02059 -6.18345 -0.53897 0.07366 0.29058 0.69991 1.15193 1.44338 1.47880 1.55304 1.69796 2.00598 2.39599 2.51305 3.22326 3.23316 3.28744 3.76185 4.00404 4.20879 4.23534 4.31490 4.45903 4.50800 4.62565 4.66836 4.83435 4.89636 4.90828 4.97753 5.01522 5.02877 5.03186 5.15179 5.16695 5.21886 5.35593 5.41650 5.46042 5.54327 5.64542 5.67879 6.11463 6.11538 6.18517 6.38662 6.41829 6.73112 6.75889 6.87744 7.49940 8.97123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024383 B = 0.002308 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.081718 B =12127.600646 C =12908.715084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.022 4.022 3 C -0.135 4.135 4 C 0.032 3.968 5 N -0.462 5.462 6 C -0.020 4.020 7 S 0.223 5.777 8 C -0.035 4.035 9 N -0.589 5.589 10 C 0.506 3.494 11 O -0.501 6.501 12 C 0.510 3.490 13 O -0.542 6.542 14 N -0.674 5.674 15 C 0.142 3.858 16 C 0.051 3.949 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.525 4.525 20 H 0.052 0.948 21 C 0.027 3.973 22 N -0.901 5.901 23 Si 0.947 3.053 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.232 0.768 35 H 0.435 0.565 36 H 0.416 0.584 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 18.025 -9.081 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.043 4.043 3 C -0.193 4.193 4 C -0.104 4.104 5 N -0.176 5.176 6 C -0.317 4.317 7 S 0.474 5.526 8 C -0.252 4.252 9 N -0.237 5.237 10 C 0.287 3.713 11 O -0.375 6.375 12 C 0.290 3.710 13 O -0.420 6.420 14 N -0.326 5.326 15 C 0.020 3.980 16 C 0.050 3.950 17 C -0.183 4.183 18 C -0.183 4.183 19 C -0.564 4.564 20 H 0.071 0.929 21 C -0.173 4.173 22 N -0.539 5.539 23 Si 0.773 3.227 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.248 0.752 35 H 0.278 0.722 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.330 17.459 -9.743 23.490 hybrid contribution 0.269 -0.398 1.518 1.592 sum -12.061 17.062 -8.225 22.455 Atomic orbital electron populations 1.21733 0.92884 1.01745 1.02908 1.19803 0.97135 0.96367 0.91024 1.21731 1.00498 0.94136 1.02907 1.20402 1.00539 0.94651 0.94843 1.66162 1.22886 1.30403 0.98110 1.29100 1.00785 0.97320 1.04507 1.85026 1.47329 1.27266 0.92951 1.23630 1.07605 1.00848 0.93100 1.42307 1.47222 1.25846 1.08367 1.20399 0.79543 0.81299 0.90079 1.90737 1.55099 1.63161 1.28549 1.19589 0.80761 0.82296 0.88376 1.90762 1.57565 1.64934 1.28765 1.46041 1.47855 1.26230 1.12496 1.21625 0.97569 0.94370 0.84447 1.18375 0.91707 0.90083 0.94794 1.21725 0.98258 1.01257 0.97082 1.21721 0.99492 1.00034 0.97081 1.21242 1.31341 1.11404 0.92418 0.92947 1.25477 0.96069 0.97467 0.98274 1.69921 1.37087 1.23323 1.23614 0.85735 0.77519 0.78697 0.80702 1.20574 1.21204 1.19745 0.92309 0.90419 0.93457 0.89888 0.92309 0.90425 0.93440 0.75170 0.72218 0.74623 0.92306 0.92299 0.95008 0.91845 0.95700 0.95682 0.91843 0.95000 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.14 71.98 0.66 -1.34 16 2 C -0.02 -0.36 3.26 -11.54 -0.04 -0.40 16 3 C -0.14 -2.00 9.14 71.98 0.66 -1.34 16 4 C 0.03 0.66 5.34 41.72 0.22 0.89 16 5 N -0.46 -9.40 10.43 -190.98 -1.99 -11.39 16 6 C -0.02 -0.32 12.21 130.66 1.60 1.27 16 7 S 0.22 4.51 20.45 -56.49 -1.16 3.35 16 8 C -0.03 -0.78 7.17 82.63 0.59 -0.18 16 9 N -0.59 -13.50 5.39 -307.36 -1.66 -15.16 16 10 C 0.51 13.84 7.85 87.21 0.68 14.53 16 11 O -0.50 -14.78 14.10 -3.46 -0.05 -14.83 16 12 C 0.51 15.95 7.88 87.21 0.69 16.64 16 13 O -0.54 -18.61 16.47 -3.30 -0.05 -18.66 16 14 N -0.67 -22.52 4.95 -464.60 -2.30 -24.82 16 15 C 0.14 5.55 4.50 86.38 0.39 5.93 16 16 C 0.05 2.26 0.50 -52.93 -0.03 2.24 16 17 C -0.13 -5.47 8.08 71.98 0.58 -4.89 16 18 C -0.13 -5.47 8.08 71.98 0.58 -4.89 16 19 C -0.53 -26.52 8.01 25.60 0.21 -26.31 16 20 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 21 C 0.03 1.38 5.15 84.65 0.44 1.82 16 22 N -0.90 -47.34 9.35 21.45 0.20 -47.14 16 23 Si 0.95 41.44 29.54 68.60 2.03 43.46 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.08 1.22 6.48 -2.39 -0.02 1.21 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.23 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.44 8.64 6.67 -92.71 -0.62 8.03 16 36 H 0.42 13.40 5.63 -92.71 -0.52 12.88 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 40 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 41 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 44 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 45 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -58.14 378.50 2.14 -56.00 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.11 Total: 25.24 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 7.23 Total: 3.95 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -5.75 Total: -98.52 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.10 Total: -33.49 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.16 Total: 3.35 kcal Total: -58.14 2.14 -56.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411650578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.002 kcal (2) G-P(sol) polarization free energy of solvation -58.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.20 seconds