Wall clock time and date at job start Wed Apr 1 2020 00:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37877 * 120.00434 * 294.30421 * 5 3 2 8 8 N 1.31514 * 120.00339 * 153.95015 * 7 5 3 9 9 Si 1.86805 * 120.00054 * 333.96047 * 7 5 3 10 10 H 1.48494 * 109.47190 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46651 * 299.99492 * 9 7 5 12 12 H 1.48501 * 109.47075 * 59.99169 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21366 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.49306 * 120.00195 * 179.97438 * 14 13 3 17 17 O 1.21390 * 119.99840 * 0.02562 * 16 14 13 18 18 N 1.34781 * 120.00195 * 179.97438 * 16 14 13 19 19 C 1.38750 * 120.00085 * 179.97438 * 18 16 14 20 20 N 1.29683 * 124.94036 * 359.69946 * 19 18 16 21 21 C 1.31914 * 116.92150 * 179.76726 * 20 19 18 22 22 C 1.33530 * 114.56669 * 0.51842 * 21 20 19 23 23 C 1.50692 * 125.97306 * 179.74634 * 22 21 20 24 24 C 1.53009 * 109.47158 * 60.00200 * 23 22 21 25 25 C 1.53003 * 109.47496 * 180.02562 * 23 22 21 26 26 C 1.52998 * 109.47505 * 300.00160 * 23 22 21 27 27 S 1.70969 * 124.94397 * 180.02562 * 19 18 16 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.97007 * 119.99410 * 354.97021 * 8 7 5 34 34 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 35 35 H 0.96993 * 119.99572 * 0.02562 * 18 16 14 36 36 H 1.08006 * 122.71371 * 180.24523 * 21 20 19 37 37 H 1.08996 * 109.46794 * 59.99828 * 24 23 22 38 38 H 1.08993 * 109.47324 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46793 * 300.00155 * 24 23 22 40 40 H 1.08995 * 109.46909 * 59.99925 * 25 23 22 41 41 H 1.08993 * 109.47485 * 180.02562 * 25 23 22 42 42 H 1.09001 * 109.46656 * 300.00276 * 25 23 22 43 43 H 1.09004 * 109.47293 * 59.99915 * 26 23 22 44 44 H 1.09000 * 109.47625 * 179.97438 * 26 23 22 45 45 H 1.08995 * 109.46920 * 300.00087 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3347 2.6307 -0.4665 16 6 0.0716 3.3213 -2.6738 17 8 0.8579 3.3496 -3.5982 18 7 -1.1445 3.8871 -2.8059 19 6 -1.4971 4.5034 -3.9980 20 7 -0.7323 4.5954 -5.0412 21 6 -1.2310 5.2126 -6.0950 22 6 -2.4735 5.6739 -5.9317 23 6 -3.2834 6.4192 -6.9609 24 6 -3.4672 5.5400 -8.1996 25 6 -4.6530 6.7699 -6.3760 26 6 -2.5522 7.7049 -7.3521 27 16 -3.0003 5.2589 -4.3026 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8117 0.4042 0.4383 34 1 2.2954 2.1150 -1.9977 35 1 -1.7728 3.8642 -2.0674 36 1 -0.6775 5.3388 -7.0138 37 1 -3.9882 4.6240 -7.9209 38 1 -4.0534 6.0788 -8.9439 39 1 -2.4913 5.2905 -8.6162 40 1 -4.5217 7.3963 -5.4938 41 1 -5.2390 7.3085 -7.1206 42 1 -5.1742 5.8541 -6.0970 43 1 -1.5763 7.4555 -7.7687 44 1 -3.1378 8.2438 -8.0970 45 1 -2.4212 8.3312 -6.4697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435020244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:40 Heat of formation + Delta-G solvation = -30.397687 kcal Electronic energy + Delta-G solvation = -26841.222986 eV Core-core repulsion = 22985.747929 eV Total energy + Delta-G solvation = -3855.475057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.91065 -39.79879 -38.44285 -37.18063 -35.70257 -34.74306 -32.52503 -31.51035 -29.17993 -27.81588 -27.65486 -27.56840 -26.12799 -23.97390 -22.50615 -21.92149 -20.48662 -19.74302 -19.59107 -18.95786 -17.72837 -17.04146 -16.72118 -16.10798 -15.99871 -15.39020 -15.25265 -14.97795 -14.48667 -14.21275 -14.07302 -13.91830 -13.60199 -13.44745 -12.74708 -12.72512 -12.69626 -12.52820 -12.37996 -12.11204 -11.98295 -11.82240 -11.79392 -11.51987 -11.45902 -11.04977 -10.91976 -10.87076 -10.79539 -10.51488 -9.95638 -9.91617 -9.78010 -9.45563 -9.28386 -9.12595 -8.39441 -8.33836 -8.31729 -6.67708 -4.27093 0.46358 0.71364 1.42476 1.70858 2.47139 2.76991 3.35683 3.41296 3.53482 3.56441 3.67776 4.18558 4.38763 4.41301 4.51654 4.54952 4.89347 4.89629 5.01719 5.12432 5.20772 5.32919 5.33452 5.45972 5.49457 5.54699 5.64807 5.74195 5.87108 5.88454 5.96109 5.99227 6.04179 6.14811 6.54003 6.62608 6.69761 6.76735 6.88745 7.08730 7.25032 7.44623 7.57045 7.83902 8.16776 8.22684 8.44153 8.74337 9.38001 10.70830 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029072 B = 0.002266 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.910070 B =12353.039819 C =12691.085075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.249 3.751 4 H 0.046 0.954 5 C -0.633 4.633 6 H 0.066 0.934 7 C 0.050 3.950 8 N -0.881 5.881 9 Si 1.029 2.971 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.658 5.658 14 C 0.499 3.501 15 O -0.531 6.531 16 C 0.501 3.499 17 O -0.450 6.450 18 N -0.616 5.616 19 C 0.266 3.734 20 N -0.475 5.475 21 C 0.069 3.931 22 C -0.231 4.231 23 C 0.016 3.984 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.138 4.138 27 S 0.132 5.868 28 H 0.034 0.966 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.273 0.727 34 H 0.407 0.593 35 H 0.433 0.567 36 H 0.175 0.825 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.898 11.487 -15.709 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.147 3.853 4 H 0.064 0.936 5 C -0.670 4.670 6 H 0.084 0.916 7 C -0.159 4.159 8 N -0.512 5.512 9 Si 0.856 3.144 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.307 5.307 14 C 0.278 3.722 15 O -0.410 6.410 16 C 0.280 3.720 17 O -0.317 6.317 18 N -0.269 5.269 19 C -0.102 4.102 20 N -0.195 5.195 21 C -0.082 4.082 22 C -0.353 4.353 23 C 0.013 3.987 24 C -0.196 4.196 25 C -0.208 4.208 26 C -0.196 4.196 27 S 0.385 5.615 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.242 0.758 35 H 0.273 0.727 36 H 0.192 0.808 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.950 10.999 -13.338 27.162 hybrid contribution 0.477 0.352 -2.409 2.480 sum -20.473 11.351 -15.747 28.212 Atomic orbital electron populations 1.21914 0.97385 0.99280 1.01737 1.22264 0.93705 0.99295 1.01963 1.19256 0.96411 0.88706 0.80970 0.93614 1.21957 0.89254 1.50586 1.05227 0.91587 1.25624 0.96634 0.91589 1.02021 1.70863 1.13771 1.35871 1.30724 0.84232 0.76080 0.77675 0.76434 1.20711 1.20571 1.19838 1.46235 1.13172 1.52353 1.18916 1.19543 0.84530 0.81356 0.86816 1.90737 1.50463 1.59603 1.40210 1.21089 0.81504 0.79542 0.89867 1.90862 1.48215 1.52564 1.40013 1.42781 1.17765 1.53879 1.12457 1.23660 0.94959 1.00222 0.91379 1.66592 1.33630 1.20396 0.98932 1.21478 0.92399 0.96898 0.97410 1.25752 1.00013 1.11823 0.97757 1.18956 0.93667 0.94218 0.91903 1.21913 1.02326 0.99404 0.95914 1.22005 0.95477 1.02056 1.01271 1.21915 1.00362 0.95715 1.01584 1.83881 1.14564 1.52931 1.10120 0.94685 0.92756 0.93660 0.92768 0.91303 0.91677 0.75791 0.72730 0.80783 0.92296 0.91875 0.92108 0.92070 0.91442 0.92082 0.92113 0.91874 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.53 37.16 0.32 -2.47 16 2 C -0.13 -2.89 5.37 -26.73 -0.14 -3.03 16 3 C 0.25 5.80 1.84 -69.09 -0.13 5.67 16 4 H 0.05 1.13 6.12 -51.93 -0.32 0.81 16 5 C -0.63 -16.84 8.92 -34.44 -0.31 -17.15 16 6 H 0.07 1.86 7.96 -52.48 -0.42 1.45 16 7 C 0.05 1.38 5.15 -17.82 -0.09 1.29 16 8 N -0.88 -25.64 13.70 55.43 0.76 -24.88 16 9 Si 1.03 24.18 26.56 -169.99 -4.51 19.67 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -5.99 6.34 56.52 0.36 -5.63 16 13 N -0.66 -13.57 5.02 -55.41 -0.28 -13.85 16 14 C 0.50 9.41 6.49 -11.65 -0.08 9.34 16 15 O -0.53 -10.39 13.62 5.48 0.07 -10.32 16 16 C 0.50 8.62 7.85 -11.65 -0.09 8.53 16 17 O -0.45 -8.81 15.10 5.46 0.08 -8.73 16 18 N -0.62 -8.60 5.39 -13.55 -0.07 -8.68 16 19 C 0.27 3.61 8.01 -87.55 -0.70 2.91 16 20 N -0.47 -7.18 8.64 -15.17 -0.13 -7.31 16 21 C 0.07 0.80 10.60 -19.16 -0.20 0.60 16 22 C -0.23 -2.16 5.15 -35.96 -0.19 -2.35 16 23 C 0.02 0.10 0.92 -155.66 -0.14 -0.04 16 24 C -0.14 -0.81 8.35 37.16 0.31 -0.50 16 25 C -0.15 -0.86 7.59 37.16 0.28 -0.58 16 26 C -0.14 -0.82 8.34 37.16 0.31 -0.51 16 27 S 0.13 1.26 21.85 -107.50 -2.35 -1.08 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 30 H 0.04 0.85 5.63 -51.93 -0.29 0.56 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.55 5.77 -51.93 -0.30 1.25 16 33 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 34 H 0.41 8.17 7.99 -40.82 -0.33 7.85 16 35 H 0.43 4.97 8.29 -40.82 -0.34 4.63 16 36 H 0.18 1.66 8.06 -52.48 -0.42 1.23 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.36 7.99 -51.93 -0.42 -0.06 16 40 H 0.06 0.36 8.00 -51.93 -0.42 -0.05 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.36 8.00 -51.93 -0.42 -0.06 16 43 H 0.06 0.36 7.99 -51.93 -0.42 -0.05 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -31.25 378.93 -8.21 -39.46 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.64 Total: 8.31 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.85 Total: 1.70 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.28 Total: -54.72 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.16 Total: -19.04 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.51 Total: 19.67 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.35 Total: -1.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.25 -8.21 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435020244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.063 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds