Wall clock time and date at job start Wed Apr 1 2020 00:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37877 * 120.00434 * 294.30421 * 5 3 2 8 8 N 1.31514 * 120.00339 * 153.95015 * 7 5 3 9 9 Si 1.86805 * 120.00054 * 333.96047 * 7 5 3 10 10 H 1.48494 * 109.47190 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46651 * 299.99492 * 9 7 5 12 12 H 1.48501 * 109.47075 * 59.99169 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21366 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.49306 * 120.00195 * 179.97438 * 14 13 3 17 17 O 1.21390 * 119.99840 * 0.02562 * 16 14 13 18 18 N 1.34781 * 120.00195 * 179.97438 * 16 14 13 19 19 C 1.38750 * 120.00085 * 179.97438 * 18 16 14 20 20 N 1.29683 * 124.94036 * 359.69946 * 19 18 16 21 21 C 1.31914 * 116.92150 * 179.76726 * 20 19 18 22 22 C 1.33530 * 114.56669 * 0.51842 * 21 20 19 23 23 C 1.50692 * 125.97306 * 179.74634 * 22 21 20 24 24 C 1.53009 * 109.47158 * 60.00200 * 23 22 21 25 25 C 1.53003 * 109.47496 * 180.02562 * 23 22 21 26 26 C 1.52998 * 109.47505 * 300.00160 * 23 22 21 27 27 S 1.70969 * 124.94397 * 180.02562 * 19 18 16 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.97007 * 119.99410 * 354.97021 * 8 7 5 34 34 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 35 35 H 0.96993 * 119.99572 * 0.02562 * 18 16 14 36 36 H 1.08006 * 122.71371 * 180.24523 * 21 20 19 37 37 H 1.08996 * 109.46794 * 59.99828 * 24 23 22 38 38 H 1.08993 * 109.47324 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46793 * 300.00155 * 24 23 22 40 40 H 1.08995 * 109.46909 * 59.99925 * 25 23 22 41 41 H 1.08993 * 109.47485 * 180.02562 * 25 23 22 42 42 H 1.09001 * 109.46656 * 300.00276 * 25 23 22 43 43 H 1.09004 * 109.47293 * 59.99915 * 26 23 22 44 44 H 1.09000 * 109.47625 * 179.97438 * 26 23 22 45 45 H 1.08995 * 109.46920 * 300.00087 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3347 2.6307 -0.4665 16 6 0.0716 3.3213 -2.6738 17 8 0.8579 3.3496 -3.5982 18 7 -1.1445 3.8871 -2.8059 19 6 -1.4971 4.5034 -3.9980 20 7 -0.7323 4.5954 -5.0412 21 6 -1.2310 5.2126 -6.0950 22 6 -2.4735 5.6739 -5.9317 23 6 -3.2834 6.4192 -6.9609 24 6 -3.4672 5.5400 -8.1996 25 6 -4.6530 6.7699 -6.3760 26 6 -2.5522 7.7049 -7.3521 27 16 -3.0003 5.2589 -4.3026 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8117 0.4042 0.4383 34 1 2.2954 2.1150 -1.9977 35 1 -1.7728 3.8642 -2.0674 36 1 -0.6775 5.3388 -7.0138 37 1 -3.9882 4.6240 -7.9209 38 1 -4.0534 6.0788 -8.9439 39 1 -2.4913 5.2905 -8.6162 40 1 -4.5217 7.3963 -5.4938 41 1 -5.2390 7.3085 -7.1206 42 1 -5.1742 5.8541 -6.0970 43 1 -1.5763 7.4555 -7.7687 44 1 -3.1378 8.2438 -8.0970 45 1 -2.4212 8.3312 -6.4697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435020244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:39 Heat of formation + Delta-G solvation = -51.350687 kcal Electronic energy + Delta-G solvation = -26842.131576 eV Core-core repulsion = 22985.747929 eV Total energy + Delta-G solvation = -3856.383647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.18358 -40.92849 -39.76615 -37.95080 -37.34274 -35.98116 -34.51202 -33.18789 -30.10117 -29.35118 -28.26637 -28.10897 -27.33909 -25.23457 -24.23435 -23.09448 -21.71174 -21.29080 -20.72674 -20.26146 -19.31541 -18.27450 -17.90888 -17.44430 -17.28417 -16.74092 -16.20364 -16.14349 -15.64696 -15.31711 -15.15563 -14.82933 -14.73498 -14.69090 -14.54398 -14.47421 -14.02745 -13.60244 -13.19670 -13.16673 -12.96708 -12.67675 -12.63865 -12.56917 -12.53479 -12.34099 -12.27700 -12.20024 -11.77979 -11.75370 -11.61178 -11.59941 -11.27488 -11.04094 -10.43809 -10.35711 -10.29034 -10.06436 -9.29580 -8.85764 -6.44958 -0.51928 -0.19435 0.38096 0.58003 1.24845 1.48522 1.52116 1.72535 1.77410 2.14170 2.41360 2.44206 2.91284 3.23993 3.53737 3.69799 3.90087 4.03228 4.27625 4.34870 4.36132 4.47512 4.51011 4.66369 4.77288 4.78634 4.78735 4.88735 5.02187 5.02824 5.03881 5.06862 5.11485 5.13202 5.21484 5.28287 5.37197 5.41213 5.42631 5.49818 5.56626 5.63570 5.98194 6.23009 6.46944 6.55735 6.85722 6.91416 7.27439 8.51687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029072 B = 0.002266 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.910070 B =12353.039819 C =12691.085075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.254 3.746 4 H 0.040 0.960 5 C -0.635 4.635 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.912 5.912 9 Si 1.065 2.935 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.246 1.246 13 N -0.668 5.668 14 C 0.506 3.494 15 O -0.534 6.534 16 C 0.510 3.490 17 O -0.482 6.482 18 N -0.602 5.602 19 C 0.220 3.780 20 N -0.512 5.512 21 C 0.042 3.958 22 C -0.212 4.212 23 C 0.014 3.986 24 C -0.137 4.137 25 C -0.152 4.152 26 C -0.137 4.137 27 S 0.206 5.794 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.261 0.739 34 H 0.407 0.593 35 H 0.444 0.556 36 H 0.186 0.814 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.605 12.614 -16.294 32.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.151 3.849 4 H 0.057 0.943 5 C -0.672 4.672 6 H 0.054 0.946 7 C -0.196 4.196 8 N -0.544 5.544 9 Si 0.886 3.114 10 H -0.207 1.207 11 H -0.195 1.195 12 H -0.170 1.170 13 N -0.317 5.317 14 C 0.285 3.715 15 O -0.413 6.413 16 C 0.288 3.712 17 O -0.351 6.351 18 N -0.256 5.256 19 C -0.146 4.146 20 N -0.234 5.234 21 C -0.108 4.108 22 C -0.335 4.335 23 C 0.010 3.990 24 C -0.195 4.195 25 C -0.210 4.210 26 C -0.195 4.195 27 S 0.459 5.541 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.242 0.758 35 H 0.285 0.715 36 H 0.203 0.797 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.722 12.149 -13.939 30.872 hybrid contribution 1.516 0.145 -2.416 2.856 sum -23.206 12.295 -16.355 30.938 Atomic orbital electron populations 1.21811 0.95013 1.00950 1.01613 1.22162 0.95756 0.97685 1.01417 1.19008 0.94004 0.89993 0.81942 0.94266 1.22107 0.91221 1.49602 1.04257 0.94578 1.26856 0.96707 0.90862 1.05215 1.70969 1.15041 1.38435 1.29994 0.83772 0.76050 0.78684 0.72872 1.20745 1.19463 1.16984 1.46072 1.14204 1.53249 1.18145 1.19730 0.83666 0.80645 0.87488 1.90722 1.50408 1.59531 1.40647 1.20573 0.82395 0.79664 0.88577 1.90854 1.49431 1.54196 1.40593 1.42500 1.16673 1.53120 1.13308 1.23829 0.97250 1.02439 0.91067 1.66518 1.35759 1.21046 1.00112 1.21637 0.93609 0.98212 0.97327 1.26332 0.99384 1.09408 0.98344 1.19151 0.93927 0.94391 0.91490 1.21918 1.02497 0.99237 0.95820 1.22043 0.94848 1.02292 1.01807 1.21921 1.00519 0.95219 1.01854 1.83609 1.10848 1.50466 1.09176 0.92159 0.92915 0.93664 0.93113 0.92119 0.93036 0.75795 0.71466 0.79745 0.92807 0.89968 0.92407 0.92159 0.89559 0.92096 0.92425 0.89953 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.53 71.98 0.61 -4.32 16 2 C -0.13 -5.58 5.37 30.60 0.16 -5.42 16 3 C 0.25 11.83 1.84 44.25 0.08 11.91 16 4 H 0.04 1.90 6.12 -2.39 -0.01 1.88 16 5 C -0.63 -34.64 8.92 25.60 0.23 -34.41 16 6 H 0.04 2.14 7.96 -2.91 -0.02 2.12 16 7 C 0.01 0.37 5.15 84.65 0.44 0.81 16 8 N -0.91 -54.54 13.70 21.45 0.29 -54.24 16 9 Si 1.07 48.36 26.56 68.60 1.82 50.18 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.25 -10.05 6.34 99.48 0.63 -9.42 16 13 N -0.67 -27.89 5.02 -447.58 -2.25 -30.14 16 14 C 0.51 18.93 6.49 87.22 0.57 19.50 16 15 O -0.53 -20.26 13.62 -3.30 -0.04 -20.31 16 16 C 0.51 17.59 7.85 87.22 0.68 18.28 16 17 O -0.48 -19.32 15.10 -3.37 -0.05 -19.37 16 18 N -0.60 -16.46 5.39 -315.11 -1.70 -18.16 16 19 C 0.22 5.81 8.01 179.27 1.44 7.24 16 20 N -0.51 -15.50 8.64 -201.90 -1.74 -17.24 16 21 C 0.04 0.95 10.60 83.61 0.89 1.84 16 22 C -0.21 -3.57 5.15 24.62 0.13 -3.44 16 23 C 0.01 0.14 0.92 -52.93 -0.05 0.09 16 24 C -0.14 -1.24 8.35 71.99 0.60 -0.64 16 25 C -0.15 -1.22 7.59 71.98 0.55 -0.68 16 26 C -0.14 -1.28 8.34 71.98 0.60 -0.68 16 27 S 0.21 3.48 21.85 -56.49 -1.23 2.25 16 28 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.05 1.92 7.89 -2.39 -0.02 1.90 16 30 H 0.04 1.62 5.63 -2.39 -0.01 1.60 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.66 5.77 -2.39 -0.01 2.65 16 33 H 0.26 15.74 8.73 -92.70 -0.81 14.93 16 34 H 0.41 16.98 7.99 -92.71 -0.74 16.24 16 35 H 0.44 9.63 8.29 -92.71 -0.77 8.86 16 36 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.06 0.57 7.99 -2.39 -0.02 0.55 16 40 H 0.06 0.51 8.00 -2.39 -0.02 0.49 16 41 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.06 0.51 8.00 -2.39 -0.02 0.49 16 43 H 0.06 0.58 7.99 -2.39 -0.02 0.56 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -68.78 378.93 1.42 -67.36 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.59 Total: 29.60 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.92 Total: 10.07 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -5.40 Total: -119.79 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.10 Total: -39.68 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.82 Total: 50.18 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.23 Total: 2.25 kcal Total: -68.78 1.42 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435020244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.006 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds