Wall clock time and date at job start Tue Mar 31 2020 23:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46768 * 2 1 4 4 C 1.50704 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.28968 * 124.83330 * 90.00014 * 4 3 2 6 6 C 1.31784 * 117.20743 * 180.02562 * 5 4 3 7 7 C 1.50699 * 122.85799 * 180.02562 * 6 5 4 8 8 C 1.34518 * 114.28462 * 0.02562 * 6 5 4 9 9 N 1.39426 * 126.07374 * 179.97438 * 8 6 5 10 10 C 1.34773 * 119.99811 * 179.97438 * 9 8 6 11 11 O 1.21418 * 120.00067 * 0.02562 * 10 9 8 12 12 C 1.49262 * 120.00036 * 179.97438 * 10 9 8 13 13 O 1.21377 * 120.00081 * 0.02562 * 12 10 9 14 14 N 1.34781 * 120.00076 * 180.02562 * 12 10 9 15 15 C 1.46499 * 119.99874 * 180.02562 * 14 12 10 16 16 H 1.09002 * 109.47391 * 325.00213 * 15 14 12 17 17 C 1.50699 * 109.47060 * 205.00285 * 15 14 12 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 15 14 19 19 C 1.37877 * 120.00129 * 180.02562 * 17 15 14 20 20 N 1.31519 * 119.99723 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99900 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47147 * 90.00197 * 21 19 17 23 23 H 1.48499 * 109.46797 * 209.99607 * 21 19 17 24 24 H 1.48500 * 109.47032 * 329.99738 * 21 19 17 25 25 C 1.53000 * 109.46840 * 85.00543 * 15 14 12 26 26 C 1.53005 * 109.46867 * 294.99527 * 25 15 14 27 27 S 1.70946 * 124.83626 * 270.29781 * 4 3 2 28 28 H 1.08998 * 109.46990 * 59.99945 * 1 2 3 29 29 H 1.09004 * 109.46454 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47181 * 299.99569 * 1 2 3 31 31 H 1.09002 * 109.47317 * 240.00348 * 2 1 3 32 32 H 1.09000 * 109.47398 * 119.99718 * 2 1 3 33 33 H 1.09002 * 109.46917 * 60.00103 * 3 2 1 34 34 H 1.08998 * 109.47410 * 299.99798 * 3 2 1 35 35 H 1.08998 * 109.47176 * 269.98113 * 7 6 5 36 36 H 1.09002 * 109.47373 * 29.97742 * 7 6 5 37 37 H 1.09003 * 109.47532 * 149.97540 * 7 6 5 38 38 H 0.96997 * 120.00027 * 0.02562 * 9 8 6 39 39 H 0.97002 * 119.99716 * 0.02562 * 14 12 10 40 40 H 0.97003 * 119.99231 * 179.97438 * 20 19 17 41 41 H 1.08990 * 109.47170 * 54.99738 * 25 15 14 42 42 H 1.09001 * 109.46952 * 174.99815 * 25 15 14 43 43 H 1.09004 * 109.46908 * 180.02562 * 26 25 15 44 44 H 1.09000 * 109.47443 * 300.00098 * 26 25 15 45 45 H 1.09001 * 109.47099 * 60.00379 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2841 1.4425 -1.0576 6 6 5.5902 1.4420 -0.8822 7 6 6.5691 1.4424 -2.0280 8 6 5.9753 1.4412 0.4067 9 7 7.2901 1.4401 0.8707 10 6 7.5370 1.4399 2.1956 11 8 6.6146 1.4402 2.9851 12 6 8.9446 1.4381 2.6924 13 8 9.8667 1.4373 1.9032 14 7 9.1915 1.4374 4.0174 15 6 10.5730 1.4362 4.5050 16 1 11.1954 0.8467 3.8318 17 6 10.6177 0.8351 5.8861 18 1 9.7082 0.4882 6.3538 19 6 11.8199 0.7279 6.5528 20 7 12.9276 1.1499 5.9831 21 14 11.8751 -0.0166 8.2651 22 1 12.0862 -1.4828 8.1608 23 1 12.9916 0.5908 9.0331 24 1 10.5916 0.2505 8.9626 25 6 11.0967 2.8729 4.5568 26 6 11.1687 3.4409 3.1380 27 16 4.5229 1.4356 1.4041 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 6.8051 0.4149 -2.3046 36 1 6.1284 1.9565 -2.8822 37 1 7.4818 1.9562 -1.7261 38 1 8.0270 1.4402 0.2400 39 1 8.4546 1.4376 4.6481 40 1 13.7732 1.0748 6.4523 41 1 10.4238 3.4833 5.1589 42 1 12.0914 2.8811 5.0024 43 1 11.5422 4.4643 3.1749 44 1 11.8417 2.8305 2.5359 45 1 10.1740 3.4327 2.6924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439554435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:49 Heat of formation + Delta-G solvation = -65.167721 kcal Electronic energy + Delta-G solvation = -26732.227339 eV Core-core repulsion = 22875.244540 eV Total energy + Delta-G solvation = -3856.982799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.13974 -40.97158 -39.91035 -37.35721 -36.75347 -35.64892 -34.35313 -32.86169 -32.29005 -29.37209 -29.11986 -28.37465 -25.92874 -24.66023 -24.12518 -22.37895 -22.19301 -21.46030 -21.17128 -20.06741 -18.72906 -18.24948 -17.78641 -17.44001 -17.24899 -16.92832 -16.24568 -16.14052 -15.84659 -15.47791 -15.19500 -15.00105 -14.63661 -14.63396 -14.25804 -13.93811 -13.54873 -13.50424 -13.31867 -13.22503 -13.05802 -12.93234 -12.83804 -12.71425 -12.69582 -12.43258 -12.32676 -12.17858 -12.12446 -11.93391 -11.61604 -11.61049 -11.13029 -10.90002 -10.57449 -10.48086 -10.08955 -9.89919 -9.15017 -8.19852 -6.36681 -0.56134 0.02647 0.33930 0.67758 1.19933 1.44869 1.46490 1.56301 1.66739 2.08614 2.37502 2.62177 3.10330 3.11335 3.40570 3.84275 3.94205 4.12046 4.12913 4.38331 4.47282 4.53257 4.60179 4.68299 4.69292 4.71246 4.74754 4.82002 4.95875 4.96930 4.99902 5.19555 5.21013 5.27303 5.29900 5.32983 5.36354 5.45260 5.51383 5.56756 5.72233 5.80378 6.09551 6.28037 6.61928 6.67733 6.72020 7.02894 7.34850 8.85235 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.002458 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.928943 B =11390.452987 C =12502.530699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.039 4.039 4 C 0.004 3.996 5 N -0.470 5.470 6 C 0.025 3.975 7 C -0.078 4.078 8 C -0.039 4.039 9 N -0.589 5.589 10 C 0.505 3.495 11 O -0.504 6.504 12 C 0.504 3.496 13 O -0.541 6.541 14 N -0.666 5.666 15 C 0.276 3.724 16 H 0.017 0.983 17 C -0.553 4.553 18 H 0.069 0.931 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.264 1.264 25 C -0.124 4.124 26 C -0.127 4.127 27 S 0.221 5.779 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.437 0.563 39 H 0.410 0.590 40 H 0.267 0.733 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.150 1.064 -12.423 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.079 4.079 4 C -0.274 4.274 5 N -0.185 5.185 6 C -0.111 4.111 7 C -0.137 4.137 8 C -0.256 4.256 9 N -0.237 5.237 10 C 0.287 3.713 11 O -0.380 6.380 12 C 0.283 3.717 13 O -0.420 6.420 14 N -0.316 5.316 15 C 0.174 3.826 16 H 0.035 0.965 17 C -0.591 4.591 18 H 0.087 0.913 19 C -0.179 4.179 20 N -0.546 5.546 21 Si 0.793 3.207 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.189 1.189 25 C -0.163 4.163 26 C -0.185 4.185 27 S 0.476 5.524 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.279 0.721 39 H 0.246 0.754 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.324 1.087 -11.751 23.501 hybrid contribution 1.285 -0.406 0.110 1.352 sum -19.039 0.680 -11.641 22.326 Atomic orbital electron populations 1.21742 0.93553 1.02504 1.02726 1.21510 0.97355 0.94533 1.02143 1.20422 0.82886 0.99348 1.05269 1.27758 1.02956 1.04076 0.92562 1.66208 1.03415 1.16439 1.32392 1.20527 0.91406 1.06480 0.92668 1.20407 0.95273 1.03879 0.94125 1.23580 0.90245 1.14817 0.96939 1.42299 1.05584 1.68551 1.07232 1.20594 0.90512 0.77442 0.82787 1.90694 1.45309 1.47321 1.54642 1.19571 0.87926 0.79708 0.84492 1.90758 1.45405 1.50362 1.55491 1.46237 1.11712 1.68386 1.05251 1.18678 0.76380 0.93934 0.93574 0.96496 1.21503 0.94782 1.41881 1.00954 0.91296 1.25669 0.94936 0.95341 1.01951 1.70008 0.99023 1.46300 1.39318 0.85408 0.78084 0.78258 0.78996 1.20366 1.20754 1.18875 1.21828 1.02700 0.96059 0.95692 1.21720 1.00279 0.99331 0.97128 1.84871 0.92454 1.68008 1.07115 0.91886 0.92060 0.91679 0.92421 0.92101 0.88059 0.88224 0.89608 0.89452 0.90134 0.72114 0.75446 0.92362 0.94080 0.90219 0.93221 0.94434 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.12 -1.57 5.92 30.60 0.18 -1.39 16 3 C -0.04 -0.56 5.79 29.85 0.17 -0.39 16 4 C 0.00 0.09 6.63 88.53 0.59 0.68 16 5 N -0.47 -11.48 10.52 -178.85 -1.88 -13.36 16 6 C 0.03 0.61 6.77 41.71 0.28 0.89 16 7 C -0.08 -1.37 10.07 71.24 0.72 -0.65 16 8 C -0.04 -1.02 7.17 82.63 0.59 -0.42 16 9 N -0.59 -15.88 5.38 -307.36 -1.65 -17.53 16 10 C 0.51 16.25 7.85 87.21 0.68 16.93 16 11 O -0.50 -17.02 14.10 -3.46 -0.05 -17.07 16 12 C 0.50 18.94 6.45 87.21 0.56 19.51 16 13 O -0.54 -22.12 13.61 -3.33 -0.05 -22.17 16 14 N -0.67 -27.16 5.01 -447.61 -2.24 -29.41 16 15 C 0.28 13.44 2.24 44.25 0.10 13.54 16 16 H 0.02 0.96 7.58 -2.39 -0.02 0.94 16 17 C -0.55 -28.36 8.73 25.60 0.22 -28.14 16 18 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 19 C 0.02 1.14 5.29 84.65 0.45 1.59 16 20 N -0.91 -49.55 11.29 21.45 0.24 -49.31 16 21 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 25 C -0.12 -5.76 5.45 30.60 0.17 -5.59 16 26 C -0.13 -5.25 8.51 71.98 0.61 -4.63 16 27 S 0.22 5.44 20.41 -56.49 -1.15 4.29 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.23 7.22 -2.39 -0.02 1.21 16 38 H 0.44 10.32 7.09 -92.71 -0.66 9.66 16 39 H 0.41 15.50 8.01 -92.71 -0.74 14.75 16 40 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 4.14 5.95 -2.39 -0.01 4.13 16 43 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.04 1.63 7.85 -2.39 -0.02 1.62 16 45 H 0.04 1.59 5.65 -2.39 -0.01 1.58 16 Total: -1.00 -60.99 382.91 0.92 -60.07 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.37 Total: 30.17 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 6.04 Total: 11.22 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -5.54 Total: -109.61 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.09 Total: -39.24 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.15 Total: 4.29 kcal Total: -60.99 0.92 -60.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439554435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.093 kcal (2) G-P(sol) polarization free energy of solvation -60.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds