Wall clock time and date at job start Wed Apr 1 2020 01:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47203 * 174.07195 * 3 2 1 5 5 C 1.34771 * 120.00414 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99826 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00115 * 180.02562 * 5 4 3 8 8 N 1.46897 * 109.46919 * 174.37327 * 7 5 4 9 9 C 1.46203 * 111.00156 * 64.74987 * 8 7 5 10 10 C 1.51271 * 109.09413 * 144.75742 * 9 8 7 11 11 C 1.53833 * 109.63825 * 92.40537 * 10 9 8 12 12 N 1.47610 * 111.28702 * 319.97674 * 11 10 9 13 13 C 1.34777 * 118.74415 * 138.30698 * 12 11 10 14 14 O 1.21283 * 120.00108 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.99976 * 359.97438 * 13 12 11 16 16 S 1.81001 * 109.46812 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99894 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00361 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99797 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47127 * 89.99715 * 21 19 17 23 23 H 1.48501 * 109.47157 * 210.00075 * 21 19 17 24 24 H 1.48503 * 109.47019 * 330.00005 * 21 19 17 25 25 C 1.44874 * 122.50698 * 318.28953 * 12 11 10 26 26 C 1.41441 * 111.00187 * 293.71163 * 8 7 5 27 27 H 4.40648 * 5.51408 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.47290 * 54.07604 * 3 2 1 29 29 H 1.08996 * 109.47446 * 294.07057 * 3 2 1 30 30 H 0.97004 * 119.99297 * 359.97438 * 4 3 2 31 31 H 1.08990 * 109.47239 * 54.37422 * 7 5 4 32 32 H 1.09006 * 109.46575 * 294.36887 * 7 5 4 33 33 H 1.08994 * 109.53528 * 264.64345 * 9 8 7 34 34 H 1.09000 * 109.53401 * 24.87342 * 9 8 7 35 35 H 1.09004 * 109.44706 * 212.45905 * 10 9 8 36 36 H 1.08994 * 109.44911 * 332.36614 * 10 9 8 37 37 H 1.08999 * 109.12595 * 199.50957 * 11 10 9 38 38 H 1.09009 * 109.06445 * 80.40913 * 11 10 9 39 39 H 1.09003 * 109.47308 * 299.99600 * 15 13 12 40 40 H 1.08998 * 109.47237 * 60.00105 * 15 13 12 41 41 H 0.97002 * 119.99506 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.43910 * 329.67165 * 25 12 11 43 43 H 1.09000 * 109.43690 * 209.80534 * 25 12 11 44 44 H 1.08994 * 109.38913 * 311.84835 * 26 8 7 45 45 H 1.09003 * 109.38722 * 71.53425 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3747 -0.1427 5 6 4.4586 1.6203 -0.1686 6 8 5.2472 0.7038 -0.0734 7 6 4.9603 3.0338 -0.3148 8 7 6.4230 3.0506 -0.1807 9 6 7.0577 2.3134 -1.2721 10 6 8.3564 2.9960 -1.6407 11 6 9.5143 2.3676 -0.8465 12 7 9.1152 2.0791 0.5451 13 6 9.5061 0.9165 1.1037 14 8 9.1914 0.6564 2.2457 15 6 10.3341 -0.0603 0.3092 16 16 10.6963 -1.5122 1.3276 17 6 11.6454 -2.4589 0.1841 18 1 11.8355 -2.0758 -0.8076 19 6 12.1498 -3.6968 0.5581 20 7 11.9194 -4.1633 1.7673 21 14 13.1566 -4.7002 -0.6539 22 1 14.5929 -4.3500 -0.5136 23 1 12.9700 -6.1466 -0.3744 24 1 12.7072 -4.4014 -2.0374 25 6 8.3198 2.9982 1.3333 26 6 6.8160 2.6930 1.1302 27 1 -1.0502 -0.0004 0.0002 28 1 3.0096 -0.6021 -0.8322 29 1 3.0095 -0.4183 0.9382 30 1 2.5030 2.1077 -0.2192 31 1 4.5172 3.6586 0.4606 32 1 4.6809 3.4188 -1.2956 33 1 7.2612 1.2916 -0.9519 34 1 6.3946 2.3003 -2.1371 35 1 8.5403 2.8739 -2.7082 36 1 8.2884 4.0577 -1.4039 37 1 10.3585 3.0571 -0.8400 38 1 9.8159 1.4389 -1.3312 39 1 9.7813 -0.3676 -0.5786 40 1 11.2681 0.4148 0.0093 41 1 12.2716 -5.0285 2.0285 42 1 8.5281 4.0207 1.0181 43 1 8.5735 2.8856 2.3874 44 1 6.2305 3.2629 1.8516 45 1 6.6391 1.6284 1.2833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490648955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:45 Heat of formation + Delta-G solvation = 7.757347 kcal Electronic energy + Delta-G solvation = -27327.057261 eV Core-core repulsion = 23473.236731 eV Total energy + Delta-G solvation = -3853.820531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.75370 -39.55769 -37.62460 -35.78627 -34.88813 -32.99632 -32.62936 -32.36320 -30.54686 -28.89982 -27.33244 -26.36836 -25.46381 -24.87296 -22.20123 -21.17782 -20.56266 -19.07720 -18.79738 -17.63449 -17.35719 -16.76293 -16.30354 -16.04654 -15.98985 -15.56275 -15.38829 -14.85374 -14.75068 -14.41172 -14.08496 -13.89144 -13.66123 -13.63209 -13.31410 -13.05618 -12.59623 -12.39213 -12.30241 -12.00975 -11.59051 -11.48303 -11.32691 -11.24692 -11.02314 -10.98307 -10.94183 -10.88720 -10.80632 -10.69044 -10.43488 -9.73123 -9.40717 -9.20283 -9.00631 -8.40651 -8.21675 -8.13227 -6.41778 -6.15409 -3.84833 2.00052 2.30798 2.39399 3.07555 3.16067 3.20837 3.26217 3.30993 3.35146 3.70334 3.70746 3.84300 4.26392 4.51187 4.73402 4.75270 4.93117 5.02075 5.05035 5.16657 5.18590 5.19365 5.21147 5.24744 5.43250 5.45001 5.54662 5.61833 5.66418 5.69115 5.84304 5.87696 5.94364 5.98672 6.01331 6.18632 6.21118 6.27721 6.77974 6.93968 7.06308 7.13812 7.18872 7.65033 7.67593 7.93189 8.41381 8.71914 9.29660 10.92083 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002901 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.318933 B = 9649.196993 C =11171.706754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.206 4.206 3 C 0.227 3.773 4 N -0.732 5.732 5 C 0.474 3.526 6 O -0.519 6.519 7 C 0.045 3.955 8 N -0.533 5.533 9 C 0.069 3.931 10 C -0.130 4.130 11 C 0.108 3.892 12 N -0.615 5.615 13 C 0.531 3.469 14 O -0.516 6.516 15 C -0.149 4.149 16 S -0.062 6.062 17 C -0.533 4.533 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.126 3.874 26 C 0.042 3.958 27 H 0.222 0.778 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.402 0.598 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.267 0.733 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.570 19.086 -8.146 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.207 4.207 3 C 0.104 3.896 4 N -0.387 5.387 5 C 0.259 3.741 6 O -0.394 6.394 7 C -0.086 4.086 8 N -0.255 5.255 9 C -0.058 4.058 10 C -0.169 4.169 11 C -0.015 4.015 12 N -0.350 5.350 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.300 4.300 16 S 0.164 5.836 17 C -0.681 4.681 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C 0.002 3.998 26 C -0.088 4.088 27 H 0.239 0.761 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.236 0.764 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.187 18.321 -6.291 27.265 hybrid contribution 0.061 -0.860 -2.107 2.277 sum -19.126 17.461 -8.399 27.226 Atomic orbital electron populations 1.25029 0.95940 0.97401 1.00896 1.22972 0.94283 1.02649 1.00782 1.18096 0.83013 0.84726 1.03769 1.46185 1.07647 1.08722 1.76109 1.22413 0.81823 0.93574 0.76286 1.90827 1.54489 1.46429 1.47607 1.22340 0.89710 0.91883 1.04715 1.58893 1.03405 1.58722 1.04458 1.21572 0.94896 0.97239 0.92118 1.21874 0.94232 1.01214 0.99538 1.21993 0.96652 1.01511 0.81387 1.47787 1.54154 1.19435 1.13659 1.20347 0.79368 0.81297 0.87140 1.90679 1.55340 1.74943 1.18104 1.23558 1.01247 1.01498 1.03688 1.85390 1.68412 1.11181 1.18578 1.22864 1.38185 1.05945 1.01100 0.91018 1.24992 0.96142 0.96691 0.95825 1.70030 1.43323 1.19107 1.17896 0.86179 0.79934 0.78873 0.80570 1.20295 1.20794 1.19716 1.21368 0.88851 0.92800 0.96811 1.21888 0.96953 1.01427 0.88547 0.76136 0.89001 0.88893 0.76433 0.87930 0.87665 0.91576 0.91817 0.90408 0.90377 0.91861 0.89765 0.89428 0.89458 0.92267 0.90490 0.89468 0.90691 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 19.25 29.55 0.57 -0.57 16 2 C -0.21 -1.69 13.46 -37.12 -0.50 -2.19 16 3 C 0.23 2.06 6.15 -6.83 -0.04 2.02 16 4 N -0.73 -5.84 5.54 -63.16 -0.35 -6.19 16 5 C 0.47 4.98 7.27 -10.99 -0.08 4.90 16 6 O -0.52 -8.16 12.62 5.55 0.07 -8.09 16 7 C 0.05 0.34 5.58 -4.98 -0.03 0.32 16 8 N -0.53 -5.53 3.99 -240.94 -0.96 -6.49 16 9 C 0.07 0.78 4.13 -5.07 -0.02 0.76 16 10 C -0.13 -1.25 5.78 -27.17 -0.16 -1.41 16 11 C 0.11 1.29 5.99 -3.00 -0.02 1.27 16 12 N -0.61 -9.47 2.18 -172.43 -0.38 -9.85 16 13 C 0.53 10.88 7.65 -10.98 -0.08 10.79 16 14 O -0.52 -12.53 15.29 5.56 0.08 -12.45 16 15 C -0.15 -3.25 4.49 36.01 0.16 -3.09 16 16 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 17 C -0.53 -15.67 9.50 30.94 0.29 -15.38 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.90 13.22 55.49 0.73 -26.17 16 21 Si 0.92 21.97 29.55 -169.99 -5.02 16.94 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 25 C 0.13 1.68 5.51 -3.97 -0.02 1.66 16 26 C 0.04 0.53 4.93 -5.74 -0.03 0.50 16 27 H 0.22 0.65 7.80 -54.08 -0.42 0.23 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.40 2.03 8.45 -40.82 -0.34 1.68 16 31 H 0.10 0.56 7.92 -51.93 -0.41 0.15 16 32 H 0.11 0.56 7.94 -51.93 -0.41 0.15 16 33 H 0.07 1.04 6.22 -51.93 -0.32 0.71 16 34 H 0.06 0.64 7.58 -51.93 -0.39 0.25 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.70 7.98 -51.93 -0.41 0.28 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.07 5.87 -51.92 -0.30 0.77 16 39 H 0.09 1.82 7.41 -51.92 -0.38 1.43 16 40 H 0.09 1.75 8.04 -51.92 -0.42 1.33 16 41 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 43 H 0.09 1.30 7.28 -51.93 -0.38 0.92 16 44 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 45 H 0.06 1.00 6.21 -51.93 -0.32 0.68 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -38.43 382.82 -8.91 -47.34 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.59 Total: 1.53 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.05 Total: 1.63 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.95 Total: -48.69 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.16 Total: -20.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.43 -8.91 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490648955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.101 kcal (2) G-P(sol) polarization free energy of solvation -38.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds