Wall clock time and date at job start Tue Mar 31 2020 23:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33427 * 119.99857 * 2 1 4 4 C 1.46325 * 120.00158 * 179.97438 * 3 2 1 5 5 C 1.35205 * 120.00182 * 187.38613 * 4 3 2 6 6 C 1.46199 * 119.99990 * 15.01345 * 5 4 3 7 7 O 1.21721 * 120.00205 * 8.11574 * 6 5 4 8 8 N 1.34781 * 119.99712 * 188.11829 * 6 5 4 9 9 C 1.39303 * 119.99536 * 184.17023 * 8 6 5 10 10 C 1.39193 * 119.92617 * 324.11559 * 9 8 6 11 11 C 1.37631 * 120.07499 * 180.23195 * 10 9 8 12 12 C 1.39828 * 119.92270 * 359.50128 * 11 10 9 13 13 C 1.47468 * 120.07468 * 180.25023 * 12 11 10 14 14 O 1.21629 * 119.99741 * 147.50948 * 13 12 11 15 15 N 1.34777 * 120.00299 * 327.51125 * 13 12 11 16 16 C 1.36888 * 119.99475 * 5.80518 * 15 13 12 17 17 H 1.08005 * 120.00570 * 309.96769 * 16 15 13 18 18 C 1.39030 * 120.00013 * 129.97382 * 16 15 13 19 19 N 1.31375 * 120.00576 * 183.21263 * 18 16 15 20 20 Si 1.86807 * 119.99963 * 3.21205 * 18 16 15 21 21 H 1.48505 * 109.47008 * 94.42423 * 20 18 16 22 22 H 1.48491 * 109.47068 * 214.42632 * 20 18 16 23 23 H 1.48503 * 109.46831 * 334.42594 * 20 18 16 24 24 C 1.46497 * 120.00357 * 185.80581 * 15 13 12 25 25 C 1.47199 * 109.47251 * 84.79099 * 24 15 13 26 26 N 9.85691 * 120.94993 * 175.46119 * 6 1 2 27 27 C 1.39826 * 119.84956 * 0.50075 * 12 11 10 28 28 C 1.37636 * 119.92103 * 359.74802 * 27 12 11 29 29 H 1.09003 * 109.47411 * 300.00206 * 1 2 3 30 30 H 1.09004 * 109.46847 * 60.00006 * 1 2 3 31 31 H 1.08996 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00062 * 179.97438 * 2 1 3 33 33 H 1.07997 * 119.99743 * 0.02562 * 3 2 1 34 34 H 1.08006 * 119.99666 * 7.39045 * 4 3 2 35 35 H 1.08005 * 119.99710 * 195.00899 * 5 4 3 36 36 H 0.96997 * 120.00343 * 4.17305 * 8 6 5 37 37 H 1.08003 * 119.95649 * 359.96243 * 10 9 8 38 38 H 1.08003 * 120.03634 * 179.74493 * 11 10 9 39 39 H 0.96996 * 120.00883 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.47365 * 204.79719 * 24 15 13 41 41 H 1.09004 * 109.46937 * 324.78991 * 24 15 13 42 42 H 1.08001 * 120.04001 * 179.72968 * 27 12 11 43 43 H 1.08002 * 119.96132 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1555 0.0000 4 6 3.6373 1.1556 0.0006 5 6 4.3133 2.3169 0.1511 6 6 3.6195 3.5090 0.6358 7 8 2.4756 3.4240 1.0433 8 7 4.2465 4.7020 0.6314 9 6 3.6180 5.8211 1.1730 10 6 2.2420 5.9796 1.0349 11 6 1.6186 7.0864 1.5647 12 6 2.3676 8.0469 2.2513 13 6 1.7023 9.2313 2.8250 14 8 2.1269 9.7307 3.8496 15 7 0.6237 9.7605 2.2142 16 6 0.0740 9.1312 1.1299 17 1 0.7028 8.8251 0.3068 18 6 -1.2939 8.8861 1.0881 19 7 -1.8126 8.2265 0.0772 20 14 -2.3945 9.4948 2.4693 21 1 -2.9664 10.8150 2.1013 22 1 -3.4951 8.5227 2.6901 23 1 -1.5968 9.6306 3.7145 24 6 0.0397 11.0090 2.7105 25 6 0.7602 12.1531 2.1287 26 7 1.3162 13.0357 1.6822 27 6 3.7497 7.8846 2.3881 28 6 4.3674 6.7779 1.8514 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.0469 -0.9353 0.0004 33 1 1.6340 2.0908 0.0004 34 1 4.1774 0.2280 -0.1193 35 1 5.3658 2.3637 -0.0867 36 1 5.1352 4.7815 0.2511 37 1 1.6637 5.2353 0.5076 38 1 0.5516 7.2108 1.4535 39 1 -2.7668 8.0552 0.0482 40 1 -1.0109 11.0576 2.4244 41 1 0.1222 11.0420 3.7969 42 1 4.3318 8.6268 2.9141 43 1 5.4349 6.6520 1.9564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492918154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:07 Heat of formation + Delta-G solvation = 50.455882 kcal Electronic energy + Delta-G solvation = -27977.231880 eV Core-core repulsion = 23989.818945 eV Total energy + Delta-G solvation = -3987.412935 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 27.63 seconds Orbital eigenvalues (eV) -40.46472 -39.48767 -37.78992 -36.12543 -35.70054 -34.97426 -34.43710 -32.50665 -32.20628 -30.52488 -29.86232 -27.88049 -27.06346 -25.25775 -23.78763 -22.30284 -21.67864 -20.19049 -19.71268 -19.50426 -18.66441 -17.35734 -17.22212 -17.03641 -16.01415 -15.62221 -15.20969 -14.91750 -14.73099 -14.36018 -14.20257 -13.88787 -13.60121 -13.57485 -13.40501 -13.19692 -13.04780 -12.86456 -12.70725 -12.58147 -12.43044 -12.08404 -12.02229 -11.80844 -11.68110 -11.53027 -11.44399 -11.11835 -10.78765 -10.72956 -10.47007 -10.03129 -9.89803 -9.60682 -9.33359 -8.88268 -8.45604 -8.36102 -8.06553 -7.70439 -6.60958 -4.43146 0.55007 1.49813 2.00712 2.51525 2.91145 3.06664 3.07380 3.09900 3.16777 3.31291 3.36437 3.60640 3.93661 4.27184 4.48458 4.57212 4.58402 4.69816 4.89073 4.96852 5.12308 5.29492 5.37435 5.44647 5.46754 5.54257 5.57140 5.66715 5.73522 5.90776 5.92576 5.94559 6.02846 6.03469 6.19422 6.56426 6.64415 6.66652 6.69101 6.74574 7.07598 7.15400 7.21366 7.48453 7.58085 7.80262 8.06920 8.08803 8.20851 8.69574 9.01130 9.34153 10.45145 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.003115 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.243434 B = 8987.165074 C =10674.830224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C -0.157 4.157 4 C -0.023 4.023 5 C -0.224 4.224 6 C 0.540 3.460 7 O -0.513 6.513 8 N -0.668 5.668 9 C 0.149 3.851 10 C -0.136 4.136 11 C -0.040 4.040 12 C -0.123 4.123 13 C 0.546 3.454 14 O -0.579 6.579 15 N -0.464 5.464 16 C -0.353 4.353 17 H 0.113 0.887 18 C 0.070 3.930 19 N -0.854 5.854 20 Si 0.869 3.131 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.252 1.252 24 C 0.190 3.810 25 C 0.214 3.786 26 N -0.450 5.450 27 C -0.059 4.059 28 C -0.168 4.168 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.407 0.593 37 H 0.136 0.864 38 H 0.178 0.822 39 H 0.280 0.720 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.817 -15.141 -1.083 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.150 4.150 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.245 4.245 6 C 0.332 3.668 7 O -0.391 6.391 8 N -0.312 5.312 9 C 0.055 3.945 10 C -0.156 4.156 11 C -0.058 4.058 12 C -0.126 4.126 13 C 0.337 3.663 14 O -0.463 6.463 15 N -0.186 5.186 16 C -0.480 4.480 17 H 0.130 0.870 18 C -0.140 4.140 19 N -0.488 5.488 20 Si 0.696 3.304 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.176 1.176 24 C 0.065 3.935 25 C -0.105 4.105 26 N -0.129 5.129 27 C -0.078 4.078 28 C -0.189 4.189 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.243 0.757 37 H 0.154 0.846 38 H 0.194 0.806 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.144 0.856 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.857 -13.772 -1.056 15.891 hybrid contribution -0.256 -0.019 0.299 0.394 sum 7.602 -13.791 -0.757 15.765 Atomic orbital electron populations 1.20894 0.92645 1.02234 1.02845 1.23687 0.96614 0.97327 0.97357 1.22591 0.93229 1.00329 1.01308 1.22588 0.94289 0.96749 0.90587 1.22868 1.00855 0.93141 1.07659 1.18505 0.86307 0.83129 0.78883 1.90789 1.17004 1.85437 1.45831 1.43282 1.20676 1.07382 1.59810 1.17910 0.92905 0.87289 0.96429 1.21286 0.92787 0.98795 1.02733 1.22510 1.03837 0.89678 0.89807 1.19767 0.93576 0.96619 1.02647 1.18354 0.81331 0.83427 0.83186 1.90676 1.66914 1.64279 1.24386 1.43468 1.28309 1.17317 1.29497 1.19147 0.93432 1.37335 0.98126 0.86995 1.25473 0.97351 0.94599 0.96542 1.69600 1.13960 1.35791 1.29424 0.87026 0.80942 0.79124 0.83281 1.19351 1.20715 1.17594 1.19437 0.95220 0.79374 0.99516 1.29974 0.93601 0.94080 0.92865 1.80961 1.09664 1.12285 1.09966 1.20896 0.93448 0.96567 0.96917 1.20595 0.99353 0.96389 1.02529 0.90906 0.91124 0.92114 0.87559 0.83458 0.85471 0.85048 0.75750 0.84586 0.80554 0.90907 0.88209 0.86526 0.85611 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 10.19 36.00 0.37 -0.77 16 2 C -0.13 -1.22 9.99 -35.99 -0.36 -1.58 16 3 C -0.16 -1.75 8.38 -38.01 -0.32 -2.07 16 4 C -0.02 -0.20 9.86 -37.41 -0.37 -0.57 16 5 C -0.22 -2.08 10.05 -37.47 -0.38 -2.46 16 6 C 0.54 7.10 7.42 -13.06 -0.10 7.00 16 7 O -0.51 -8.60 10.92 5.17 0.06 -8.54 16 8 N -0.67 -8.14 5.30 -11.17 -0.06 -8.20 16 9 C 0.15 2.35 6.28 -83.76 -0.53 1.82 16 10 C -0.14 -2.53 8.65 -39.45 -0.34 -2.87 16 11 C -0.04 -0.81 7.89 -39.21 -0.31 -1.12 16 12 C -0.12 -2.52 5.57 -104.95 -0.58 -3.11 16 13 C 0.55 12.29 7.33 -12.50 -0.09 12.20 16 14 O -0.58 -13.81 16.40 5.25 0.09 -13.72 16 15 N -0.46 -10.34 2.12 -119.15 -0.25 -10.59 16 16 C -0.35 -8.31 6.45 -15.00 -0.10 -8.41 16 17 H 0.11 2.85 6.91 -52.48 -0.36 2.49 16 18 C 0.07 1.64 5.19 -17.45 -0.09 1.55 16 19 N -0.85 -21.35 13.95 55.50 0.77 -20.57 16 20 Si 0.87 17.78 24.72 -169.99 -4.20 13.58 16 21 H -0.27 -5.24 7.08 56.52 0.40 -4.84 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.25 -4.94 6.14 56.52 0.35 -4.59 16 24 C 0.19 3.81 3.90 -6.83 -0.03 3.78 16 25 C 0.21 4.46 15.71 -20.80 -0.33 4.13 16 26 N -0.45 -9.87 18.53 42.10 0.78 -9.09 16 27 C -0.06 -1.04 9.59 -39.21 -0.38 -1.42 16 28 C -0.17 -2.54 9.95 -39.45 -0.39 -2.93 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.76 8.05 -52.49 -0.42 0.34 16 33 H 0.15 2.07 5.59 -52.49 -0.29 1.78 16 34 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 36 H 0.41 3.39 8.80 -40.82 -0.36 3.03 16 37 H 0.14 2.61 6.28 -52.48 -0.33 2.28 16 38 H 0.18 3.97 5.13 -52.48 -0.27 3.70 16 39 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 40 H 0.10 1.93 3.44 -51.93 -0.18 1.75 16 41 H 0.12 2.15 7.40 -51.93 -0.38 1.76 16 42 H 0.13 2.13 7.96 -52.49 -0.42 1.72 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -29.75 371.14 -6.28 -36.04 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.74 Total: 12.32 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -4.32 Total: 3.18 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 1.24 Total: -48.45 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.14 Total: -22.27 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -4.20 Total: 13.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.75 -6.28 -36.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.492 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.63 seconds