Wall clock time and date at job start Wed Apr 1 2020 00:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 H 1.08996 * 109.47279 * 305.00214 * 3 2 1 5 5 C 1.50707 * 109.47246 * 185.00027 * 3 2 1 6 6 H 1.07996 * 120.00178 * 240.00254 * 5 3 2 7 7 C 1.37876 * 119.99740 * 59.99670 * 5 3 2 8 8 N 1.31517 * 120.00226 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47318 * 60.00060 * 9 7 5 11 11 H 1.48494 * 109.47500 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46986 * 300.00475 * 9 7 5 13 13 N 1.46500 * 109.47412 * 65.00287 * 3 2 1 14 14 C 1.34773 * 119.99810 * 275.00190 * 13 3 2 15 15 O 1.21366 * 119.99891 * 359.97438 * 14 13 3 16 16 C 1.49309 * 120.00200 * 179.97438 * 14 13 3 17 17 O 1.21387 * 119.99783 * 0.02562 * 16 14 13 18 18 N 1.34775 * 120.00338 * 179.97438 * 16 14 13 19 19 C 1.38745 * 120.00028 * 180.02562 * 18 16 14 20 20 N 1.29681 * 124.94238 * 180.02562 * 19 18 16 21 21 C 1.31916 * 116.92844 * 179.75488 * 20 19 18 22 22 C 1.50700 * 122.71963 * 180.26277 * 21 20 19 23 23 C 1.52996 * 109.47142 * 300.20250 * 22 21 20 24 24 C 1.53004 * 109.46939 * 60.20397 * 22 21 20 25 25 C 1.33533 * 114.56064 * 0.45236 * 21 20 19 26 26 C 1.50703 * 125.96941 * 179.85323 * 25 21 20 27 27 S 1.70970 * 124.94713 * 0.02944 * 19 18 16 28 28 H 1.08993 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46813 * 299.99873 * 1 2 3 30 30 H 1.09001 * 109.47174 * 59.99844 * 1 2 3 31 31 H 1.09000 * 109.47296 * 239.99912 * 2 1 3 32 32 H 1.09001 * 109.47174 * 120.00156 * 2 1 3 33 33 H 0.97001 * 120.00013 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00444 * 94.99207 * 13 3 2 35 35 H 0.96999 * 119.99856 * 0.02562 * 18 16 14 36 36 H 1.09000 * 109.46895 * 180.20029 * 22 21 20 37 37 H 1.09000 * 109.47405 * 60.00092 * 23 22 21 38 38 H 1.08996 * 109.47035 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.47483 * 299.99904 * 23 22 21 40 40 H 1.08998 * 109.46962 * 60.00020 * 24 22 21 41 41 H 1.08996 * 109.46895 * 179.97438 * 24 22 21 42 42 H 1.08996 * 109.46779 * 300.00002 * 24 22 21 43 43 H 1.09002 * 109.47152 * 179.71203 * 26 25 21 44 44 H 1.09001 * 109.46980 * 59.71303 * 26 25 21 45 45 H 1.09004 * 109.47113 * 299.71284 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1452 -0.2344 11 1 6.3978 0.2167 -2.6504 12 1 6.5004 2.2799 -1.3808 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3397 2.6326 0.4335 16 6 0.0400 3.3315 2.6430 17 8 0.8153 3.3637 3.5764 18 7 -1.1771 3.8988 2.7580 19 6 -1.5441 4.5192 3.9435 20 7 -2.6869 5.0931 4.1587 21 6 -2.8705 5.6310 5.3491 22 6 -4.1496 6.3249 5.7409 23 6 -4.3994 7.5040 4.7986 24 6 -5.3153 5.3386 5.6439 25 6 -1.8297 5.5142 6.1775 26 6 -1.7598 6.0350 7.5900 27 16 -0.5555 4.6382 5.3334 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0611 -2.9499 34 1 2.2720 2.1231 1.9978 35 1 -1.7965 3.8734 2.0119 36 1 -4.0663 6.6893 6.7648 37 1 -4.4827 7.1396 3.7747 38 1 -5.3243 8.0062 5.0823 39 1 -3.5690 8.2067 4.8677 40 1 -5.1372 4.4985 6.3153 41 1 -6.2403 5.8403 5.9277 42 1 -5.3985 4.9741 4.6200 43 1 -0.7898 5.7873 8.0210 44 1 -2.5496 5.5771 8.1855 45 1 -1.8896 7.1173 7.5850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578084435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:56 Heat of formation + Delta-G solvation = -56.671623 kcal Electronic energy + Delta-G solvation = -26920.395205 eV Core-core repulsion = 23063.780824 eV Total energy + Delta-G solvation = -3856.614381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 9.68 seconds Orbital eigenvalues (eV) -42.24735 -41.11759 -40.01614 -37.40786 -36.80915 -35.12563 -34.34061 -32.95335 -32.86303 -29.32844 -28.14714 -27.98410 -26.32821 -25.10688 -24.55272 -22.92136 -22.34637 -21.45554 -20.81172 -19.26576 -19.05190 -18.04787 -17.98491 -17.54791 -17.28819 -16.89660 -16.27639 -16.08616 -15.85980 -15.44271 -15.12235 -14.98142 -14.62963 -14.17673 -14.05688 -13.84430 -13.80505 -13.60670 -13.52790 -13.30251 -13.18167 -13.00305 -12.96652 -12.72147 -12.66445 -12.21094 -12.20800 -12.13152 -11.77315 -11.73976 -11.64030 -11.51931 -11.13324 -10.82661 -10.73835 -10.56126 -10.17145 -9.91454 -9.20011 -8.19135 -6.36246 -0.54567 0.02587 0.28043 0.72473 1.00264 1.46862 1.47291 1.55306 1.68486 2.06522 2.34380 2.50789 3.11042 3.32921 3.42861 3.91895 4.05551 4.28198 4.29457 4.40716 4.47349 4.53024 4.58777 4.69201 4.76526 4.79390 4.84302 4.98910 4.99591 5.00421 5.01774 5.18161 5.19068 5.28165 5.33085 5.35103 5.36741 5.38350 5.50613 5.56099 5.70323 5.79222 6.09425 6.17735 6.58743 6.66649 6.71491 7.01724 7.35246 8.85834 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.002399 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.471542 B =11668.259984 C =12325.584273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.017 0.983 5 C -0.554 4.554 6 H 0.071 0.929 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.664 5.664 14 C 0.506 3.494 15 O -0.539 6.539 16 C 0.517 3.483 17 O -0.495 6.495 18 N -0.592 5.592 19 C 0.211 3.789 20 N -0.506 5.506 21 C 0.072 3.928 22 C -0.017 4.017 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.266 4.266 26 C -0.069 4.069 27 S 0.229 5.771 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.411 0.589 35 H 0.437 0.563 36 H 0.110 0.890 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 11.123 19.587 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.035 0.965 5 C -0.592 4.592 6 H 0.089 0.911 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.313 5.313 14 C 0.285 3.715 15 O -0.418 6.418 16 C 0.298 3.702 17 O -0.368 6.368 18 N -0.243 5.243 19 C -0.155 4.155 20 N -0.229 5.229 21 C -0.060 4.060 22 C -0.038 4.038 23 C -0.196 4.196 24 C -0.195 4.195 25 C -0.388 4.388 26 C -0.128 4.128 27 S 0.480 5.520 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.278 0.722 36 H 0.128 0.872 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.067 10.595 19.086 24.943 hybrid contribution 0.140 0.074 -0.829 0.844 sum -11.927 10.670 18.257 24.278 Atomic orbital electron populations 1.21724 0.96656 0.99759 1.00387 1.21830 0.94031 0.98496 1.01891 1.18695 0.94215 0.89598 0.80064 0.96486 1.21478 0.91071 1.39645 1.06979 0.91127 1.25670 1.03118 0.94178 0.94899 1.70002 1.37092 1.37881 1.09765 0.85458 0.79258 0.78438 0.77576 1.19122 1.21019 1.19782 1.46218 1.13870 1.52613 1.18625 1.19448 0.84058 0.81062 0.86965 1.90777 1.51482 1.59598 1.39955 1.20574 0.81191 0.79151 0.89292 1.90679 1.50110 1.56591 1.39463 1.42284 1.16669 1.51495 1.13845 1.23297 0.95854 1.02358 0.93988 1.66032 1.18733 1.14658 1.23471 1.20122 0.98420 1.00532 0.86960 1.19902 0.88333 0.94652 1.00891 1.21747 1.02145 0.96727 0.98938 1.21746 0.97567 0.98726 1.01499 1.26643 0.97917 1.09581 1.04656 1.20319 1.03932 1.01886 0.86673 1.84893 1.14907 1.50356 1.01821 0.93204 0.94182 0.94527 0.90210 0.93922 0.92355 0.75266 0.72198 0.87151 0.93890 0.90177 0.93094 0.93042 0.90178 0.93888 0.90659 0.88863 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.60 16 3 C 0.28 13.45 2.24 44.25 0.10 13.55 16 4 H 0.02 0.97 7.58 -2.39 -0.02 0.95 16 5 C -0.55 -28.32 8.73 25.60 0.22 -28.10 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -49.79 11.29 21.45 0.24 -49.55 16 9 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 N -0.66 -26.95 5.01 -447.57 -2.24 -29.19 16 14 C 0.51 19.22 6.45 87.23 0.56 19.78 16 15 O -0.54 -22.65 13.61 -3.30 -0.04 -22.69 16 16 C 0.52 16.83 7.85 87.23 0.68 17.51 16 17 O -0.49 -16.40 13.93 -3.36 -0.05 -16.45 16 18 N -0.59 -17.36 5.39 -315.13 -1.70 -19.06 16 19 C 0.21 5.98 8.18 179.28 1.47 7.45 16 20 N -0.51 -13.72 10.48 -189.74 -1.99 -15.71 16 21 C 0.07 1.56 5.31 41.48 0.22 1.78 16 22 C -0.02 -0.26 3.20 -11.54 -0.04 -0.30 16 23 C -0.14 -2.12 9.14 71.98 0.66 -1.46 16 24 C -0.14 -2.09 9.14 71.98 0.66 -1.44 16 25 C -0.27 -5.25 6.58 24.62 0.16 -5.09 16 26 C -0.07 -0.78 9.22 71.24 0.66 -0.12 16 27 S 0.23 5.69 20.21 -56.49 -1.14 4.55 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.60 5.65 -2.39 -0.01 1.58 16 30 H 0.04 1.62 7.85 -2.39 -0.02 1.60 16 31 H 0.08 4.16 5.95 -2.39 -0.01 4.15 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.41 15.29 8.01 -92.71 -0.74 14.54 16 35 H 0.44 12.15 8.29 -92.71 -0.77 11.38 16 36 H 0.11 1.14 7.01 -2.39 -0.02 1.12 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -60.77 382.01 1.21 -59.56 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.48 Total: 30.61 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.58 Total: 14.86 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -5.69 Total: -113.51 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.09 Total: -39.14 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.14 Total: 4.55 kcal Total: -60.77 1.21 -59.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578084435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.891 kcal (2) G-P(sol) polarization free energy of solvation -60.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.68 seconds