Wall clock time and date at job start Wed Apr 1 2020 01:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47053 * 2 1 4 4 N 1.46498 * 109.47109 * 119.99765 * 2 1 3 5 5 C 1.46503 * 120.00109 * 300.00419 * 4 2 1 6 6 C 1.50704 * 109.46928 * 269.99921 * 5 4 2 7 7 H 1.07998 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00200 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99816 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00026 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47126 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46647 * 120.00179 * 10 8 6 13 13 H 1.48495 * 109.47633 * 240.00580 * 10 8 6 14 14 C 1.34775 * 119.99991 * 119.99810 * 4 2 1 15 15 O 1.21289 * 120.00027 * 179.97438 * 14 4 2 16 16 C 1.50697 * 119.99901 * 0.02562 * 14 4 2 17 17 C 1.53004 * 109.47012 * 179.97438 * 16 14 4 18 18 H 1.09001 * 109.47008 * 55.00192 * 17 16 14 19 19 N 1.46499 * 109.47121 * 295.00233 * 17 16 14 20 20 C 1.34774 * 120.00275 * 154.92845 * 19 17 16 21 21 N 1.34773 * 120.00493 * 174.82359 * 20 19 17 22 22 O 1.21588 * 119.99735 * 355.10363 * 20 19 17 23 23 C 1.50697 * 109.47347 * 174.99964 * 17 16 14 24 24 C 1.33388 * 125.20289 * 258.99034 * 23 17 16 25 25 C 1.38426 * 114.91804 * 179.85764 * 24 23 17 26 26 C 1.33384 * 114.92211 * 0.42404 * 25 24 23 27 27 S 1.75886 * 125.20108 * 79.28638 * 23 17 16 28 28 H 1.09005 * 109.47149 * 300.00103 * 1 2 3 29 29 H 1.08998 * 109.46614 * 60.00132 * 1 2 3 30 30 H 1.09001 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47069 * 240.00079 * 2 1 3 32 32 H 1.08990 * 109.47048 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46799 * 299.99762 * 3 2 1 34 34 H 1.09001 * 109.47417 * 59.99464 * 3 2 1 35 35 H 1.08997 * 109.47443 * 29.99195 * 5 4 2 36 36 H 1.08999 * 109.47665 * 150.00091 * 5 4 2 37 37 H 0.97002 * 119.99982 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47282 * 60.00114 * 16 14 4 39 39 H 1.08994 * 109.47164 * 299.99472 * 16 14 4 40 40 H 0.96998 * 119.99902 * 334.92713 * 19 17 16 41 41 H 0.97004 * 120.00310 * 180.27590 * 21 20 19 42 42 H 0.96999 * 119.99637 * 0.27578 * 21 20 19 43 43 H 1.07994 * 122.54170 * 359.97438 * 24 23 17 44 44 H 1.08002 * 122.54008 * 180.19117 * 25 24 23 45 45 H 1.08001 * 125.20327 * 179.75034 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5427 1.0364 2.3454 8 6 2.5811 1.4110 4.2140 9 7 1.5585 1.1258 4.9902 10 14 3.8690 2.6400 4.7797 11 1 4.9104 2.7839 3.7309 12 1 3.2249 3.9561 5.0210 13 1 4.4954 2.1575 6.0367 14 6 2.7932 -1.7864 1.0726 15 8 3.1979 -2.3578 2.0629 16 6 3.1577 -2.3009 -0.2961 17 6 4.0377 -3.5447 -0.1557 18 1 3.5281 -4.2822 0.4644 19 7 5.3094 -3.1749 0.4707 20 6 6.0204 -4.0978 1.1483 21 7 7.2380 -3.7866 1.6351 22 8 5.5655 -5.2129 1.3159 23 6 4.3009 -4.1304 -1.5190 24 6 3.6743 -5.1888 -2.0351 25 6 4.0825 -5.5442 -3.3092 26 6 5.0467 -4.7798 -3.8242 27 16 5.4864 -3.5275 -2.6700 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.6905 0.2975 2.4844 36 1 1.6238 -1.0225 3.2292 37 1 1.4728 1.5540 5.8563 38 1 3.7030 -1.5301 -0.8408 39 1 2.2496 -2.5578 -0.8414 40 1 5.6396 -2.2658 0.3978 41 1 7.7514 -4.4521 2.1193 42 1 7.6009 -2.8971 1.5013 43 1 2.9055 -5.7266 -1.5004 44 1 3.6554 -6.3795 -3.8443 45 1 5.4900 -4.9101 -4.8004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579271989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:49 Heat of formation + Delta-G solvation = -35.441652 kcal Electronic energy + Delta-G solvation = -28128.129423 eV Core-core repulsion = 24272.435643 eV Total energy + Delta-G solvation = -3855.693780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.03845 -39.00454 -37.86617 -36.13148 -34.97699 -33.48810 -32.85038 -30.94783 -30.71915 -29.22369 -27.15172 -26.72465 -24.78434 -23.11976 -22.19941 -21.24959 -20.88988 -19.44740 -18.31532 -17.95962 -17.61136 -16.82816 -16.47559 -16.29748 -15.58616 -15.16013 -15.13229 -14.69927 -14.37904 -14.13844 -13.75686 -13.50094 -13.43820 -13.11076 -12.82617 -12.69697 -12.52601 -12.35454 -12.19855 -11.89108 -11.67124 -11.56117 -11.44346 -11.17999 -10.94031 -10.85779 -10.80555 -10.59439 -10.39095 -10.05535 -10.02796 -9.54814 -9.49797 -9.12481 -8.85623 -8.66766 -8.49941 -8.43858 -7.65297 -6.04894 -4.08228 0.91923 1.56510 1.95546 2.66653 3.10993 3.26794 3.33940 3.36204 3.42187 3.48300 3.85219 4.42015 4.60619 4.71696 4.83908 4.96349 5.17345 5.22396 5.29352 5.34651 5.45484 5.52129 5.53930 5.61993 5.64142 5.91125 5.99224 6.05901 6.13620 6.22974 6.24787 6.33752 6.37622 6.57680 6.64590 6.84856 6.92528 7.07870 7.10620 7.47273 7.56082 7.91758 8.12995 8.24168 8.43350 8.85584 8.90356 9.09209 9.55864 11.03271 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003750 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.879143 B = 7464.721384 C = 8624.590805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.156 4.156 4 N -0.592 5.592 5 C 0.246 3.754 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.502 3.498 15 O -0.527 6.527 16 C -0.149 4.149 17 C 0.253 3.747 18 H 0.115 0.885 19 N -0.725 5.725 20 C 0.717 3.283 21 N -0.868 5.868 22 O -0.593 6.593 23 C -0.176 4.176 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.222 4.222 27 S 0.101 5.899 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.396 0.604 41 H 0.412 0.588 42 H 0.395 0.605 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -6.150 -18.556 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.214 4.214 4 N -0.324 5.324 5 C 0.127 3.873 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.288 3.712 15 O -0.404 6.404 16 C -0.190 4.190 17 C 0.144 3.856 18 H 0.133 0.867 19 N -0.380 5.380 20 C 0.416 3.584 21 N -0.436 5.436 22 O -0.471 6.471 23 C -0.295 4.295 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.358 4.358 27 S 0.364 5.636 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.229 0.771 41 H 0.243 0.757 42 H 0.223 0.777 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.402 -6.119 -17.790 19.873 hybrid contribution 0.213 0.276 0.390 0.523 sum 6.615 -5.843 -17.401 19.511 Atomic orbital electron populations 1.22161 0.95599 1.01826 1.02448 1.21004 0.94159 0.94133 0.87944 1.22134 1.01230 0.95752 1.02316 1.48324 1.49135 1.26383 1.08594 1.19227 0.95845 0.94954 0.77233 1.21443 1.08857 1.23282 1.01998 0.92419 1.24928 0.95710 0.97136 0.96420 1.69940 1.29485 1.43274 1.10650 0.86510 0.81656 0.80882 0.78735 1.19920 1.21077 1.21023 1.20102 0.79757 0.81291 0.90097 1.90743 1.52747 1.57686 1.39212 1.22104 1.01279 0.97521 0.98089 1.18822 0.83730 0.96337 0.86697 0.86682 1.44852 1.22932 1.12621 1.57560 1.15778 0.80647 0.84325 0.77678 1.42917 1.19085 1.18176 1.63407 1.90931 1.70767 1.21457 1.63936 1.25167 1.02229 1.01773 1.00316 1.20126 1.02811 0.97274 0.95932 1.20153 0.98643 1.01519 0.95816 1.25593 1.04545 1.01647 1.03999 1.84135 1.39450 1.32248 1.07726 0.91310 0.92301 0.92886 0.90791 0.92843 0.93306 0.90066 0.94871 0.94113 0.92862 0.88925 0.87720 0.77059 0.75662 0.77731 0.84111 0.84434 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.17 37.16 0.34 -1.92 16 2 C 0.13 2.00 3.17 -67.93 -0.22 1.78 16 3 C -0.16 -2.41 8.47 37.16 0.31 -2.09 16 4 N -0.59 -11.58 2.39 -167.47 -0.40 -11.98 16 5 C 0.25 6.12 4.59 -5.19 -0.02 6.10 16 6 C -0.52 -13.81 7.83 -34.44 -0.27 -14.07 16 7 H 0.06 1.53 7.63 -52.49 -0.40 1.13 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 10 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.50 9.61 7.53 -10.99 -0.08 9.52 16 15 O -0.53 -12.54 14.93 5.55 0.08 -12.46 16 16 C -0.15 -2.02 3.54 -27.88 -0.10 -2.12 16 17 C 0.25 3.64 2.00 -69.08 -0.14 3.50 16 18 H 0.12 2.01 7.30 -51.93 -0.38 1.63 16 19 N -0.73 -10.47 3.99 -59.81 -0.24 -10.71 16 20 C 0.72 11.59 8.79 -86.92 -0.76 10.83 16 21 N -0.87 -10.16 8.88 27.63 0.25 -9.92 16 22 O -0.59 -12.05 16.81 5.29 0.09 -11.96 16 23 C -0.18 -2.20 5.41 -36.00 -0.19 -2.39 16 24 C -0.13 -1.54 10.04 -41.21 -0.41 -1.96 16 25 C -0.13 -1.32 10.18 -41.21 -0.42 -1.74 16 26 C -0.22 -2.14 11.23 29.04 0.33 -1.82 16 27 S 0.10 1.07 23.09 -107.50 -2.48 -1.41 16 28 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.91 5.77 -51.93 -0.30 0.61 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 35 H 0.03 0.84 6.43 -51.93 -0.33 0.51 16 36 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 39 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 40 H 0.40 5.03 8.62 -40.82 -0.35 4.68 16 41 H 0.41 4.26 8.93 -40.82 -0.36 3.90 16 42 H 0.40 3.52 8.85 -40.82 -0.36 3.16 16 43 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -35.44 386.79 -9.38 -44.81 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.48 Total: 11.66 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.74 Total: 5.18 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.34 Total: -57.90 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.17 Total: -24.42 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.48 Total: -1.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.44 -9.38 -44.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579271989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.372 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds