Wall clock time and date at job start Wed Apr 1 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47053 * 2 1 4 4 N 1.46498 * 109.47109 * 119.99765 * 2 1 3 5 5 C 1.46503 * 120.00109 * 300.00419 * 4 2 1 6 6 C 1.50704 * 109.46928 * 269.99921 * 5 4 2 7 7 H 1.07998 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00200 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99816 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00026 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47126 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46647 * 120.00179 * 10 8 6 13 13 H 1.48495 * 109.47633 * 240.00580 * 10 8 6 14 14 C 1.34775 * 119.99991 * 119.99810 * 4 2 1 15 15 O 1.21289 * 120.00027 * 179.97438 * 14 4 2 16 16 C 1.50697 * 119.99901 * 0.02562 * 14 4 2 17 17 C 1.53004 * 109.47012 * 179.97438 * 16 14 4 18 18 H 1.09001 * 109.47008 * 55.00192 * 17 16 14 19 19 N 1.46499 * 109.47121 * 295.00233 * 17 16 14 20 20 C 1.34774 * 120.00275 * 154.92845 * 19 17 16 21 21 N 1.34773 * 120.00493 * 174.82359 * 20 19 17 22 22 O 1.21588 * 119.99735 * 355.10363 * 20 19 17 23 23 C 1.50697 * 109.47347 * 174.99964 * 17 16 14 24 24 C 1.33388 * 125.20289 * 258.99034 * 23 17 16 25 25 C 1.38426 * 114.91804 * 179.85764 * 24 23 17 26 26 C 1.33384 * 114.92211 * 0.42404 * 25 24 23 27 27 S 1.75886 * 125.20108 * 79.28638 * 23 17 16 28 28 H 1.09005 * 109.47149 * 300.00103 * 1 2 3 29 29 H 1.08998 * 109.46614 * 60.00132 * 1 2 3 30 30 H 1.09001 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47069 * 240.00079 * 2 1 3 32 32 H 1.08990 * 109.47048 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46799 * 299.99762 * 3 2 1 34 34 H 1.09001 * 109.47417 * 59.99464 * 3 2 1 35 35 H 1.08997 * 109.47443 * 29.99195 * 5 4 2 36 36 H 1.08999 * 109.47665 * 150.00091 * 5 4 2 37 37 H 0.97002 * 119.99982 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47282 * 60.00114 * 16 14 4 39 39 H 1.08994 * 109.47164 * 299.99472 * 16 14 4 40 40 H 0.96998 * 119.99902 * 334.92713 * 19 17 16 41 41 H 0.97004 * 120.00310 * 180.27590 * 21 20 19 42 42 H 0.96999 * 119.99637 * 0.27578 * 21 20 19 43 43 H 1.07994 * 122.54170 * 359.97438 * 24 23 17 44 44 H 1.08002 * 122.54008 * 180.19117 * 25 24 23 45 45 H 1.08001 * 125.20327 * 179.75034 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5427 1.0364 2.3454 8 6 2.5811 1.4110 4.2140 9 7 1.5585 1.1258 4.9902 10 14 3.8690 2.6400 4.7797 11 1 4.9104 2.7839 3.7309 12 1 3.2249 3.9561 5.0210 13 1 4.4954 2.1575 6.0367 14 6 2.7932 -1.7864 1.0726 15 8 3.1979 -2.3578 2.0629 16 6 3.1577 -2.3009 -0.2961 17 6 4.0377 -3.5447 -0.1557 18 1 3.5281 -4.2822 0.4644 19 7 5.3094 -3.1749 0.4707 20 6 6.0204 -4.0978 1.1483 21 7 7.2380 -3.7866 1.6351 22 8 5.5655 -5.2129 1.3159 23 6 4.3009 -4.1304 -1.5190 24 6 3.6743 -5.1888 -2.0351 25 6 4.0825 -5.5442 -3.3092 26 6 5.0467 -4.7798 -3.8242 27 16 5.4864 -3.5275 -2.6700 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.6905 0.2975 2.4844 36 1 1.6238 -1.0225 3.2292 37 1 1.4728 1.5540 5.8563 38 1 3.7030 -1.5301 -0.8408 39 1 2.2496 -2.5578 -0.8414 40 1 5.6396 -2.2658 0.3978 41 1 7.7514 -4.4521 2.1193 42 1 7.6009 -2.8971 1.5013 43 1 2.9055 -5.7266 -1.5004 44 1 3.6554 -6.3795 -3.8443 45 1 5.4900 -4.9101 -4.8004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579271989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:48 Heat of formation + Delta-G solvation = -61.502495 kcal Electronic energy + Delta-G solvation = -28129.259506 eV Core-core repulsion = 24272.435643 eV Total energy + Delta-G solvation = -3856.823863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34415 -40.43783 -38.77198 -37.58417 -36.21713 -34.90771 -34.65340 -32.37310 -31.98694 -30.40288 -28.81445 -27.92852 -26.00834 -24.62717 -23.47848 -22.58606 -22.08516 -20.34324 -19.63831 -19.13431 -18.76117 -18.56016 -18.08603 -17.37707 -16.85058 -16.61350 -16.30340 -16.14520 -15.84031 -15.49089 -15.05339 -14.81752 -14.76471 -14.34237 -14.08023 -13.89743 -13.65551 -13.49346 -13.38271 -13.26999 -13.02282 -12.94774 -12.82097 -12.69747 -12.57339 -12.40372 -12.17782 -12.04831 -11.65436 -11.57877 -11.46005 -11.41909 -10.69798 -10.59445 -10.54227 -10.10058 -9.56478 -9.35330 -9.28933 -8.16466 -6.28030 0.08787 0.74389 1.15322 1.36966 1.39071 1.49858 1.80829 1.90052 2.05019 2.23288 2.33684 2.47492 3.13848 3.52826 3.63035 3.67841 4.01780 4.09417 4.24206 4.30721 4.34277 4.46431 4.55087 4.64529 4.73142 4.81354 4.89396 4.91450 5.06477 5.09976 5.17102 5.22266 5.28382 5.42146 5.47219 5.47733 5.62270 5.63340 5.68841 5.86181 5.93755 6.05087 6.14778 6.78661 6.89320 7.07136 7.35714 7.57022 7.68887 8.91012 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003750 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.879143 B = 7464.721384 C = 8624.590805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 C -0.151 4.151 4 N -0.595 5.595 5 C 0.265 3.735 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.288 1.288 14 C 0.495 3.505 15 O -0.584 6.584 16 C -0.130 4.130 17 C 0.258 3.742 18 H 0.074 0.926 19 N -0.720 5.720 20 C 0.707 3.293 21 N -0.850 5.850 22 O -0.642 6.642 23 C -0.200 4.200 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.213 4.213 27 S 0.119 5.881 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.022 0.978 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.404 0.596 41 H 0.419 0.581 42 H 0.411 0.589 43 H 0.138 0.862 44 H 0.160 0.840 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.200 -5.087 -22.313 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.209 4.209 4 N -0.327 5.327 5 C 0.144 3.856 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.201 1.201 13 H -0.215 1.215 14 C 0.284 3.716 15 O -0.464 6.464 16 C -0.170 4.170 17 C 0.149 3.851 18 H 0.092 0.908 19 N -0.375 5.375 20 C 0.405 3.595 21 N -0.419 5.419 22 O -0.524 6.524 23 C -0.319 4.319 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.349 4.349 27 S 0.383 5.617 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.240 0.760 41 H 0.252 0.748 42 H 0.241 0.759 43 H 0.155 0.845 44 H 0.177 0.823 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.858 -4.995 -21.605 23.526 hybrid contribution -0.249 -0.099 1.511 1.535 sum 7.609 -5.094 -20.094 22.082 Atomic orbital electron populations 1.22136 0.94689 1.02139 1.02657 1.21428 0.94991 0.94160 0.87224 1.22075 1.00865 0.95709 1.02284 1.48334 1.49300 1.26942 1.08095 1.18601 0.95163 0.92481 0.79358 1.21691 1.08882 1.23019 1.02029 0.92255 1.25820 0.97756 0.99215 0.96703 1.70077 1.31508 1.44741 1.11100 0.85459 0.79228 0.78600 0.78081 1.18495 1.20067 1.21476 1.21067 0.78450 0.80327 0.91804 1.90720 1.54746 1.59177 1.41737 1.22051 1.02750 0.97797 0.94415 1.18595 0.83471 0.95674 0.87374 0.90773 1.44813 1.22798 1.12732 1.57113 1.16090 0.81593 0.83955 0.77857 1.42739 1.17669 1.19207 1.62269 1.90889 1.72130 1.23537 1.65823 1.24881 1.04116 1.02974 0.99908 1.20352 1.02641 0.96921 0.96787 1.20347 0.99108 1.02509 0.95231 1.26010 1.03658 1.00502 1.04702 1.84012 1.38366 1.32338 1.07015 0.94563 0.88541 0.92573 0.86444 0.93313 0.89354 0.94019 0.96048 0.99469 0.92853 0.85791 0.84848 0.76016 0.74821 0.75873 0.84465 0.82268 0.79390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 9.17 71.98 0.66 -3.47 16 2 C 0.12 3.49 3.17 44.99 0.14 3.63 16 3 C -0.15 -4.33 8.47 71.98 0.61 -3.72 16 4 N -0.60 -23.47 2.39 -802.12 -1.91 -25.39 16 5 C 0.27 13.86 4.59 85.63 0.39 14.25 16 6 C -0.52 -28.41 7.83 25.60 0.20 -28.21 16 7 H 0.06 3.17 7.63 -2.91 -0.02 3.14 16 8 C 0.00 0.17 5.46 84.65 0.46 0.63 16 9 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 10 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 14 C 0.50 19.12 7.53 87.66 0.66 19.78 16 15 O -0.58 -29.13 14.93 -3.06 -0.05 -29.17 16 16 C -0.13 -3.29 3.54 29.85 0.11 -3.18 16 17 C 0.26 7.36 2.00 44.25 0.09 7.45 16 18 H 0.07 2.74 7.30 -2.39 -0.02 2.73 16 19 N -0.72 -20.66 3.99 -461.42 -1.84 -22.51 16 20 C 0.71 23.18 8.79 179.06 1.57 24.75 16 21 N -0.85 -19.50 8.88 -184.75 -1.64 -21.14 16 22 O -0.64 -27.12 16.81 -3.99 -0.07 -27.18 16 23 C -0.20 -4.71 5.41 24.59 0.13 -4.58 16 24 C -0.14 -3.02 10.04 21.22 0.21 -2.81 16 25 C -0.14 -2.48 10.18 21.22 0.22 -2.26 16 26 C -0.21 -3.35 11.23 66.72 0.75 -2.60 16 27 S 0.12 2.17 23.09 -56.49 -1.30 0.87 16 28 H 0.04 1.17 6.66 -2.38 -0.02 1.16 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 2.33 5.77 -2.39 -0.01 2.31 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.04 1.52 6.92 -2.39 -0.02 1.51 16 35 H 0.02 1.16 6.43 -2.39 -0.02 1.15 16 36 H -0.01 -0.80 7.42 -2.39 -0.02 -0.82 16 37 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.12 2.42 7.79 -2.39 -0.02 2.40 16 39 H 0.13 2.66 7.79 -2.39 -0.02 2.64 16 40 H 0.40 9.86 8.62 -92.71 -0.80 9.06 16 41 H 0.42 8.50 8.93 -92.70 -0.83 7.67 16 42 H 0.41 6.80 8.85 -92.71 -0.82 5.98 16 43 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -83.51 386.79 0.30 -83.21 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -1.40 Total: 31.63 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.21 Total: 19.68 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -5.11 Total: -125.20 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.11 Total: -56.36 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.30 Total: 0.87 kcal Total: -83.51 0.30 -83.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579271989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.703 kcal (2) G-P(sol) polarization free energy of solvation -83.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds