Wall clock time and date at job start Wed Apr 1 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 6 6 C 1.34777 * 120.00429 * 275.00047 * 5 3 2 7 7 O 1.21592 * 119.99717 * 359.97438 * 6 5 3 8 8 N 1.34770 * 120.00511 * 180.02562 * 6 5 3 9 9 C 1.47422 * 125.64715 * 359.68908 * 8 6 5 10 10 C 1.55136 * 104.72426 * 155.82025 * 9 8 6 11 11 C 1.55161 * 101.48277 * 37.29596 * 10 9 8 12 12 O 1.42897 * 110.72261 * 82.69722 * 11 10 9 13 13 C 1.50696 * 110.86944 * 205.89888 * 11 10 9 14 14 H 1.08004 * 120.00546 * 355.06526 * 13 11 10 15 15 C 1.37878 * 119.99897 * 175.06291 * 13 11 10 16 16 N 1.31515 * 120.00317 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00186 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47248 * 89.99732 * 17 15 13 19 19 H 1.48496 * 109.47328 * 210.00443 * 17 15 13 20 20 H 1.48512 * 109.46910 * 330.00057 * 17 15 13 21 21 C 1.47022 * 125.65091 * 180.02562 * 8 6 5 22 22 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 23 23 N 1.29029 * 124.91472 * 104.99446 * 22 3 2 24 24 C 1.31780 * 117.12056 * 179.97438 * 23 22 3 25 25 C 1.50703 * 122.74642 * 179.97438 * 24 23 22 26 26 C 1.33642 * 114.50189 * 0.02562 * 24 23 22 27 27 S 1.70976 * 124.91547 * 284.69665 * 22 3 2 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97001 * 120.00176 * 95.00254 * 5 3 2 34 34 H 1.09001 * 110.36767 * 274.74911 * 9 8 6 35 35 H 1.08997 * 110.37272 * 37.07298 * 9 8 6 36 36 H 1.08997 * 111.19010 * 279.19035 * 10 9 8 37 37 H 1.08997 * 110.90629 * 155.26898 * 10 9 8 38 38 H 0.96697 * 114.00147 * 185.01951 * 12 11 10 39 39 H 0.96996 * 120.00315 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.88291 * 300.43819 * 21 8 6 41 41 H 1.09005 * 109.88025 * 61.44675 * 21 8 6 42 42 H 1.09008 * 109.46795 * 90.00498 * 25 24 23 43 43 H 1.09002 * 109.47030 * 209.99976 * 25 24 23 44 44 H 1.08989 * 109.47364 * 330.00603 * 25 24 23 45 45 H 1.08001 * 126.03277 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3669 7 8 -0.3413 2.6327 0.4316 8 7 0.0787 3.2675 2.5183 9 6 0.9156 3.3739 3.7272 10 6 0.3676 4.6159 4.4780 11 6 -1.1560 4.4898 4.2130 12 8 -1.7569 3.5825 5.1391 13 6 -1.8259 5.8380 4.2794 14 1 -1.2576 6.7099 4.5679 15 6 -3.1645 5.9585 3.9716 16 7 -3.8568 4.8969 3.6207 17 14 -3.9948 7.6299 4.0532 18 1 -3.8858 8.3017 2.7334 19 1 -5.4274 7.4544 4.4026 20 1 -3.3312 8.4623 5.0887 21 6 -1.2117 3.9220 2.7790 22 6 3.5419 1.4444 -0.1238 23 7 4.1943 1.7486 -1.1947 24 6 5.5096 1.6994 -1.1312 25 6 6.3953 2.0284 -2.3052 26 6 5.9937 1.3328 0.0594 27 16 4.6282 1.0506 1.1364 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.2719 2.1232 1.9977 34 1 0.8104 2.4795 4.3414 35 1 1.9596 3.5266 3.4538 36 1 0.7629 5.5389 4.0538 37 1 0.5851 4.5532 5.5442 38 1 -2.6929 3.4091 4.9689 39 1 -4.7984 4.9817 3.4039 40 1 -1.3676 4.7314 2.0659 41 1 -2.0195 3.1949 2.6967 42 1 6.6316 3.0925 -2.2951 43 1 7.3174 1.4509 -2.2379 44 1 5.8778 1.7799 -3.2317 45 1 7.0377 1.2316 0.3169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591953467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:31 Heat of formation + Delta-G solvation = -54.407699 kcal Electronic energy + Delta-G solvation = -27801.033208 eV Core-core repulsion = 23944.516998 eV Total energy + Delta-G solvation = -3856.516209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.60273 -40.85598 -39.35937 -37.12116 -36.06832 -34.21659 -33.51604 -32.82214 -31.49171 -29.62742 -28.85698 -28.31947 -26.76112 -24.38425 -24.25441 -22.28965 -21.60985 -21.39812 -20.30281 -19.44307 -18.99860 -18.50040 -17.56458 -17.01327 -16.95881 -16.54209 -16.16914 -15.93058 -15.75071 -15.33383 -14.83981 -14.75986 -14.62023 -14.44854 -14.33424 -13.83794 -13.71534 -13.50858 -13.36770 -13.35935 -13.15915 -12.85498 -12.67968 -12.58949 -12.47628 -12.32470 -12.28772 -12.27908 -12.08557 -11.90832 -11.26730 -11.15616 -10.72258 -10.64947 -10.49918 -10.28963 -10.27486 -9.72659 -9.45003 -8.25426 -6.40764 -0.40069 0.28569 0.70153 1.39827 1.43227 1.45360 1.52955 1.78881 2.11688 2.38161 2.78912 3.01522 3.05853 3.76709 3.79738 3.90103 4.03312 4.06428 4.17356 4.25156 4.30684 4.37587 4.41604 4.53671 4.58220 4.73245 4.77419 4.79117 4.82483 4.91858 4.94637 5.03973 5.06802 5.13514 5.23030 5.30939 5.36135 5.37912 5.43627 5.50114 5.75554 5.98809 6.11831 6.65581 6.70668 6.98354 7.29046 7.36452 7.51583 8.80530 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002770 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.339011 B =10106.954961 C =10362.680815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.243 3.757 4 H 0.086 0.914 5 N -0.727 5.727 6 C 0.719 3.281 7 O -0.622 6.622 8 N -0.634 5.634 9 C 0.105 3.895 10 C -0.110 4.110 11 C 0.234 3.766 12 O -0.586 6.586 13 C -0.556 4.556 14 H 0.066 0.934 15 C 0.026 3.974 16 N -0.914 5.914 17 Si 0.961 3.039 18 H -0.281 1.281 19 H -0.282 1.282 20 H -0.265 1.265 21 C 0.144 3.856 22 C 0.019 3.981 23 N -0.489 5.489 24 C 0.042 3.958 25 C -0.077 4.077 26 C -0.248 4.248 27 S 0.171 5.829 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.375 0.625 39 H 0.269 0.731 40 H 0.028 0.972 41 H 0.030 0.970 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.114 -10.022 -4.607 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.135 3.865 4 H 0.104 0.896 5 N -0.386 5.386 6 C 0.421 3.579 7 O -0.503 6.503 8 N -0.371 5.371 9 C -0.017 4.017 10 C -0.148 4.148 11 C 0.194 3.806 12 O -0.393 6.393 13 C -0.595 4.595 14 H 0.084 0.916 15 C -0.175 4.175 16 N -0.553 5.553 17 Si 0.787 3.213 18 H -0.207 1.207 19 H -0.207 1.207 20 H -0.189 1.189 21 C 0.020 3.980 22 C -0.258 4.258 23 N -0.205 5.205 24 C -0.090 4.090 25 C -0.136 4.136 26 C -0.387 4.387 27 S 0.426 5.574 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.224 0.776 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 21.585 -10.287 -4.559 24.342 hybrid contribution -1.048 1.211 -0.889 1.832 sum 20.537 -9.076 -5.448 23.104 Atomic orbital electron populations 1.21677 0.95191 1.01057 1.01479 1.21924 0.96339 0.93440 1.03893 1.19068 0.85042 0.95216 0.87218 0.89571 1.44988 1.15475 1.61459 1.16661 1.15458 0.82270 0.78202 0.81975 1.90891 1.53226 1.66470 1.39706 1.47893 1.18632 1.58068 1.12519 1.22471 0.94716 0.99131 0.85377 1.22747 0.93577 0.97251 1.01193 1.19695 0.90923 0.86949 0.83069 1.86091 1.29320 1.67308 1.56623 1.21818 0.95527 0.94627 1.47488 0.91571 1.25794 0.98067 1.00425 0.93215 1.69799 1.09323 1.30375 1.45792 0.85506 0.77641 0.79847 0.78342 1.20652 1.20709 1.18925 1.22341 0.82250 0.93804 0.99580 1.26770 1.00506 1.04618 0.93955 1.66053 1.08728 1.16883 1.28852 1.20816 0.88642 1.01726 0.97793 1.20457 0.97324 1.02991 0.92817 1.27339 1.05194 1.10437 0.95746 1.83765 0.96626 1.61752 1.15300 0.91425 0.93926 0.94725 0.89777 0.89347 0.75959 0.90637 0.88593 0.89983 0.89007 0.77588 0.92136 0.95333 0.95108 0.90089 0.88027 0.91289 0.77091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.51 71.98 0.61 -3.44 16 2 C -0.12 -2.77 5.59 30.60 0.17 -2.60 16 3 C 0.24 6.67 2.76 44.25 0.12 6.79 16 4 H 0.09 2.92 7.58 -2.39 -0.02 2.90 16 5 N -0.73 -21.29 4.97 -461.42 -2.29 -23.58 16 6 C 0.72 28.45 7.06 179.06 1.26 29.71 16 7 O -0.62 -29.54 13.81 -4.01 -0.06 -29.59 16 8 N -0.63 -25.73 3.32 -829.31 -2.76 -28.48 16 9 C 0.10 3.35 6.58 86.94 0.57 3.92 16 10 C -0.11 -4.09 6.24 32.07 0.20 -3.89 16 11 C 0.23 11.22 0.85 -10.35 -0.01 11.21 16 12 O -0.59 -29.13 13.07 -148.98 -1.95 -31.08 16 13 C -0.56 -29.14 8.13 25.60 0.21 -28.93 16 14 H 0.07 3.38 7.78 -2.91 -0.02 3.35 16 15 C 0.03 1.37 5.28 84.65 0.45 1.82 16 16 N -0.91 -49.92 10.96 21.45 0.24 -49.69 16 17 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 C 0.14 7.16 5.23 86.73 0.45 7.62 16 22 C 0.02 0.45 6.30 88.52 0.56 1.00 16 23 N -0.49 -12.26 10.53 -179.39 -1.89 -14.15 16 24 C 0.04 0.78 6.74 41.52 0.28 1.06 16 25 C -0.08 -0.96 10.31 71.24 0.73 -0.22 16 26 C -0.25 -3.48 11.13 66.78 0.74 -2.74 16 27 S 0.17 2.74 22.26 -56.49 -1.26 1.48 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 30 H 0.03 1.24 5.65 -2.38 -0.01 1.22 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.40 9.56 6.25 -92.71 -0.58 8.98 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 2.28 7.29 -2.39 -0.02 2.27 16 36 H 0.08 2.96 8.04 -2.39 -0.02 2.94 16 37 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.38 19.59 7.45 -74.06 -0.55 19.04 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.03 1.59 7.81 -2.39 -0.02 1.57 16 41 H 0.03 1.70 7.92 -2.38 -0.02 1.68 16 42 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.10 0.68 8.12 -2.39 -0.02 0.66 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -68.28 375.61 -1.69 -69.97 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.11 Total: 39.41 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 6.36 Total: 21.32 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -6.71 Total: -115.90 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -2.00 Total: -60.67 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.26 Total: 1.48 kcal Total: -68.28 -1.69 -69.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591953467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.563 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds