Wall clock time and date at job start Wed Apr 1 2020 00:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 H 1.08999 * 109.47407 * 54.99742 * 3 2 1 5 5 N 1.46502 * 109.46761 * 294.99883 * 3 2 1 6 6 C 1.34778 * 120.00094 * 85.00047 * 5 3 2 7 7 O 1.21587 * 120.00083 * 0.02562 * 6 5 3 8 8 N 1.34783 * 120.00138 * 179.97438 * 6 5 3 9 9 C 1.47028 * 125.64488 * 359.97438 * 8 6 5 10 10 C 1.54320 * 107.26701 * 178.99212 * 9 8 6 11 11 C 1.55153 * 102.94383 * 337.80525 * 10 9 8 12 12 O 1.42895 * 111.00660 * 277.38826 * 11 10 9 13 13 C 1.50702 * 111.00367 * 153.57571 * 11 10 9 14 14 H 1.08002 * 120.00299 * 3.18452 * 13 11 10 15 15 C 1.37884 * 119.99942 * 182.90010 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47463 * 125.62945 * 179.97438 * 8 6 5 22 22 C 1.50698 * 109.47279 * 175.00206 * 3 2 1 23 23 N 1.29022 * 124.91186 * 254.99962 * 22 3 2 24 24 C 1.31782 * 117.12647 * 179.97438 * 23 22 3 25 25 C 1.50702 * 122.75474 * 180.02562 * 24 23 22 26 26 C 1.33646 * 114.49808 * 359.97438 * 24 23 22 27 27 S 1.70976 * 124.91791 * 74.69176 * 22 3 2 28 28 H 1.09006 * 109.47227 * 60.00166 * 1 2 3 29 29 H 1.08998 * 109.47464 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47302 * 300.00809 * 1 2 3 31 31 H 1.09002 * 109.47054 * 239.99923 * 2 1 3 32 32 H 1.09001 * 109.46826 * 119.99630 * 2 1 3 33 33 H 0.96998 * 120.00213 * 264.99566 * 5 3 2 34 34 H 1.09000 * 109.88086 * 59.57636 * 9 8 6 35 35 H 1.09003 * 109.87956 * 298.40624 * 9 8 6 36 36 H 1.09004 * 110.71836 * 219.43859 * 10 9 8 37 37 H 1.09006 * 110.72351 * 96.16930 * 10 9 8 38 38 H 0.96695 * 114.00567 * 176.81707 * 12 11 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 40 40 H 1.08998 * 110.34826 * 85.23635 * 21 8 6 41 41 H 1.09002 * 110.40574 * 322.89852 * 21 8 6 42 42 H 1.08993 * 109.47187 * 89.99841 * 25 24 23 43 43 H 1.09007 * 109.47269 * 210.00315 * 25 24 23 44 44 H 1.08997 * 109.46799 * 330.00166 * 25 24 23 45 45 H 1.07998 * 126.03938 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4351 2.6643 -1.3671 7 8 -0.3412 2.6326 -0.4319 8 7 0.0787 3.2673 -2.5186 9 6 0.9161 3.3794 -3.7219 10 6 0.0861 4.1225 -4.7899 11 6 -1.3740 3.8885 -4.3202 12 8 -1.8547 2.6156 -4.7565 13 6 -2.2784 4.9962 -4.7958 14 1 -1.8860 5.7808 -5.4257 15 6 -3.6082 5.0048 -4.4315 16 7 -4.0860 4.0493 -3.6644 17 14 -4.7310 6.3736 -5.0273 18 1 -3.9554 7.3182 -5.8706 19 1 -5.8391 5.7921 -5.8269 20 1 -5.2914 7.0983 -3.8585 21 6 -1.2157 3.9237 -2.7798 22 6 3.5419 1.4444 0.1238 23 7 4.1942 1.7487 1.1946 24 6 5.5096 1.6986 1.1315 25 6 6.3952 2.0276 2.3056 26 6 5.9937 1.3310 -0.0587 27 16 4.6279 1.0363 -1.1322 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2719 2.1231 -1.9978 34 1 1.1807 2.3856 -4.0833 35 1 1.8190 3.9458 -3.4938 36 1 0.2485 3.6873 -5.7761 37 1 0.3247 5.1861 -4.7926 38 1 -2.7456 2.4040 -4.4458 39 1 -5.0215 4.0555 -3.4078 40 1 -1.1969 4.9537 -2.4239 41 1 -2.0251 3.3712 -2.3025 42 1 6.5853 1.1224 2.8822 43 1 7.3403 2.4340 1.9452 44 1 5.9007 2.7644 2.9385 45 1 7.0377 1.2296 -0.3162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591953468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:36 Heat of formation + Delta-G solvation = -54.865912 kcal Electronic energy + Delta-G solvation = -27842.504953 eV Core-core repulsion = 23985.968874 eV Total energy + Delta-G solvation = -3856.536079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57866 -40.84858 -39.31756 -37.09807 -36.04238 -34.16817 -33.51889 -32.82269 -31.53755 -29.61492 -28.85740 -28.31708 -26.75919 -24.35542 -24.22579 -22.26247 -21.55249 -21.43300 -20.28370 -19.44704 -18.99721 -18.49058 -17.43626 -17.07467 -16.91547 -16.54184 -16.12230 -15.96824 -15.78060 -15.38565 -14.87909 -14.69832 -14.58015 -14.45948 -14.30029 -13.75187 -13.71585 -13.49097 -13.37890 -13.34395 -13.15491 -12.86341 -12.67626 -12.59100 -12.45187 -12.31626 -12.28126 -12.18884 -12.07584 -11.90698 -11.28864 -11.17053 -10.72354 -10.64524 -10.49618 -10.30814 -10.24994 -9.72793 -9.35566 -8.23652 -6.40076 -0.40148 0.28544 0.70450 1.40442 1.44753 1.47419 1.55803 1.79455 2.14313 2.39140 2.80335 3.02682 3.08201 3.76778 3.81384 3.90049 4.03732 4.11204 4.19005 4.25101 4.30824 4.35104 4.40785 4.53626 4.62389 4.77125 4.77854 4.79582 4.82496 4.91575 4.94474 5.04601 5.08037 5.11270 5.28427 5.31465 5.37693 5.40223 5.44228 5.47678 5.78394 6.01348 6.12219 6.67039 6.70444 7.00650 7.31610 7.38749 7.53862 8.81803 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.002721 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.518695 B =10288.159740 C =10645.196764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.244 3.756 4 H 0.087 0.913 5 N -0.728 5.728 6 C 0.719 3.281 7 O -0.623 6.623 8 N -0.632 5.632 9 C 0.104 3.896 10 C -0.110 4.110 11 C 0.233 3.767 12 O -0.587 6.587 13 C -0.554 4.554 14 H 0.069 0.931 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.284 1.284 21 C 0.129 3.871 22 C 0.020 3.980 23 N -0.488 5.488 24 C 0.042 3.958 25 C -0.076 4.076 26 C -0.248 4.248 27 S 0.169 5.831 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.403 0.597 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.375 0.625 39 H 0.269 0.731 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.648 -7.259 4.839 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.135 3.865 4 H 0.105 0.895 5 N -0.386 5.386 6 C 0.421 3.579 7 O -0.504 6.504 8 N -0.369 5.369 9 C -0.018 4.018 10 C -0.147 4.147 11 C 0.192 3.808 12 O -0.395 6.395 13 C -0.592 4.592 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.555 5.555 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.210 1.210 21 C 0.005 3.995 22 C -0.258 4.258 23 N -0.205 5.205 24 C -0.090 4.090 25 C -0.136 4.136 26 C -0.387 4.387 27 S 0.424 5.576 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.240 0.760 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.224 0.776 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 22.135 -7.556 4.794 23.875 hybrid contribution -1.112 1.023 0.684 1.658 sum 21.023 -6.533 5.478 22.686 Atomic orbital electron populations 1.21672 0.95221 1.01005 1.01481 1.21927 0.96308 0.93583 1.03803 1.19056 0.85043 0.95124 0.87272 0.89478 1.44982 1.15570 1.61464 1.16578 1.15468 0.82220 0.78148 0.82073 1.90886 1.53168 1.66592 1.39731 1.47863 1.18489 1.58078 1.12424 1.22139 0.93896 1.01096 0.84652 1.22588 0.92975 1.00781 0.98402 1.19843 0.91507 0.82162 0.87247 1.86065 1.37072 1.38456 1.77948 1.21838 0.94866 1.10129 1.32346 0.91263 1.25824 0.99688 0.98081 0.93961 1.69780 1.15636 1.34101 1.35956 0.85422 0.78535 0.79155 0.77991 1.18745 1.20606 1.21026 1.22685 0.82554 0.94226 1.00013 1.26756 1.00490 1.04529 0.94007 1.66051 1.08723 1.17030 1.28654 1.20823 0.88635 1.01766 0.97730 1.20456 0.97231 1.02815 0.93059 1.27339 1.05166 1.10341 0.95865 1.83806 0.96694 1.61326 1.15808 0.94805 0.91558 0.93839 0.89958 0.89314 0.76032 0.90733 0.89576 0.89514 0.89349 0.77588 0.92166 0.94259 0.93799 0.89555 0.88240 0.91561 0.77086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.51 71.98 0.61 -3.62 16 2 C -0.12 -2.89 5.59 30.60 0.17 -2.72 16 3 C 0.24 6.82 2.76 44.25 0.12 6.94 16 4 H 0.09 2.98 7.58 -2.39 -0.02 2.96 16 5 N -0.73 -21.79 4.97 -461.40 -2.29 -24.08 16 6 C 0.72 28.78 7.06 179.05 1.26 30.04 16 7 O -0.62 -29.80 13.74 -3.99 -0.05 -29.85 16 8 N -0.63 -25.70 3.33 -829.66 -2.76 -28.46 16 9 C 0.10 3.33 6.15 86.73 0.53 3.87 16 10 C -0.11 -4.05 6.13 31.78 0.19 -3.85 16 11 C 0.23 11.14 0.88 -10.15 -0.01 11.13 16 12 O -0.59 -29.94 13.17 -148.98 -1.96 -31.90 16 13 C -0.55 -28.54 8.25 25.60 0.21 -28.33 16 14 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 15 C 0.03 1.32 5.29 84.66 0.45 1.76 16 16 N -0.92 -49.96 10.69 21.45 0.23 -49.73 16 17 Si 0.96 41.81 29.54 68.60 2.03 43.83 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.13 6.33 5.51 86.84 0.48 6.81 16 22 C 0.02 0.47 6.30 88.52 0.56 1.03 16 23 N -0.49 -12.30 10.53 -179.40 -1.89 -14.19 16 24 C 0.04 0.79 6.74 41.52 0.28 1.07 16 25 C -0.08 -0.95 10.31 71.24 0.73 -0.21 16 26 C -0.25 -3.52 11.13 66.78 0.74 -2.78 16 27 S 0.17 2.79 22.29 -56.49 -1.26 1.53 16 28 H 0.03 1.27 5.65 -2.38 -0.01 1.26 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.49 7.84 -2.38 -0.02 1.47 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.40 9.90 6.78 -92.71 -0.63 9.27 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.09 3.04 8.03 -2.38 -0.02 3.02 16 38 H 0.37 20.28 7.24 -74.06 -0.54 19.74 16 39 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 40 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 41 H 0.04 2.48 7.48 -2.39 -0.02 2.47 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 43 H 0.10 0.71 8.12 -2.38 -0.02 0.69 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -67.75 376.22 -1.77 -69.51 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.14 Total: 42.21 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.34 Total: 21.13 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -6.72 Total: -116.46 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -2.02 Total: -61.76 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.26 Total: 1.53 kcal Total: -67.75 -1.77 -69.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591953468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.649 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds