Wall clock time and date at job start Wed Apr 1 2020 01:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99865 * 2 1 4 4 N 1.46500 * 109.47069 * 124.99979 * 3 2 1 5 5 C 1.46496 * 120.00247 * 274.99879 * 4 3 2 6 6 C 1.50703 * 109.47203 * 275.00135 * 5 4 3 7 7 H 1.08003 * 119.99490 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00110 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00142 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 120.00172 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47213 * 89.99714 * 10 8 6 12 12 H 1.48498 * 109.47370 * 210.00215 * 10 8 6 13 13 H 1.48508 * 109.46977 * 330.00078 * 10 8 6 14 14 S 1.65603 * 119.99828 * 94.99880 * 4 3 2 15 15 O 1.42098 * 106.40273 * 336.45886 * 14 4 3 16 16 O 1.42107 * 106.40046 * 203.54325 * 14 4 3 17 17 C 1.76198 * 107.21991 * 90.00294 * 14 4 3 18 18 C 1.39874 * 126.03800 * 269.99819 * 17 14 4 19 19 N 1.30836 * 108.20052 * 179.73902 * 18 17 14 20 20 N 1.40078 * 108.20570 * 0.40637 * 19 18 17 21 21 C 1.46506 * 126.03740 * 179.85612 * 20 19 18 22 22 C 1.54262 * 110.03208 * 211.85417 * 21 20 19 23 23 C 1.54890 * 104.19734 * 217.10208 * 22 21 20 24 24 C 1.54888 * 102.74715 * 37.94381 * 23 22 21 25 25 C 1.53870 * 110.03506 * 94.68767 * 21 20 19 26 26 C 1.34947 * 107.92498 * 359.58783 * 20 19 18 27 27 H 1.08003 * 120.00109 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99955 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47450 * 5.00221 * 3 2 1 31 31 H 1.09004 * 109.47294 * 244.99731 * 3 2 1 32 32 H 1.08995 * 109.46967 * 34.99800 * 5 4 3 33 33 H 1.08999 * 109.47602 * 154.99948 * 5 4 3 34 34 H 0.97000 * 120.00509 * 179.97438 * 9 8 6 35 35 H 1.08001 * 125.89534 * 0.02562 * 18 17 14 36 36 H 1.09004 * 110.01445 * 333.29319 * 21 20 19 37 37 H 1.08995 * 110.48787 * 335.78458 * 22 21 20 38 38 H 1.09001 * 110.48571 * 98.42610 * 22 21 20 39 39 H 1.08998 * 110.75250 * 279.63247 * 23 22 21 40 40 H 1.09000 * 110.91276 * 156.33083 * 23 22 21 41 41 H 1.08995 * 110.48944 * 203.38138 * 24 23 22 42 42 H 1.09000 * 110.60178 * 80.78669 * 24 23 22 43 43 H 1.09004 * 110.03338 * 238.57820 * 25 21 20 44 44 H 1.09003 * 110.03257 * 359.97438 * 25 21 20 45 45 H 1.08006 * 126.12506 * 180.22114 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5991 3.2646 2.5450 7 1 2.9554 3.8413 1.7041 8 6 2.2089 3.9030 3.7030 9 7 2.2710 5.2141 3.7841 10 14 1.5920 2.9055 5.1570 11 1 2.7363 2.5488 6.0338 12 1 0.6096 3.7094 5.9277 13 1 0.9397 1.6653 4.6654 14 16 4.5712 0.8759 0.9173 15 8 4.5923 0.0262 -0.2215 16 8 5.0503 0.4763 2.1941 17 6 5.4768 2.3216 0.4762 18 6 5.6926 2.7931 -0.8229 19 7 6.4014 3.8902 -0.7470 20 7 6.6674 4.1468 0.6042 21 6 7.4352 5.2774 1.1319 22 6 8.1736 4.8594 2.4202 23 6 8.0990 6.1143 3.3250 24 6 6.6798 6.6620 3.0335 25 6 6.4854 6.4235 1.5218 26 6 6.0865 3.1718 1.3343 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4984 1.4372 2.5982 33 1 3.1613 1.3205 3.2221 34 1 1.9962 5.6633 4.5987 35 1 5.3320 2.3336 -1.7313 36 1 8.1509 5.6230 0.3859 37 1 7.6685 4.0174 2.8933 38 1 9.2114 4.6085 2.2008 39 1 8.8595 6.8414 3.0404 40 1 8.2000 5.8429 4.3758 41 1 6.6273 7.7265 3.2615 42 1 5.9318 6.1129 3.6055 43 1 6.7406 7.3255 0.9656 44 1 5.4532 6.1387 1.3180 45 1 6.1051 3.0854 2.4107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601419209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:32 Heat of formation + Delta-G solvation = 2.106925 kcal Electronic energy + Delta-G solvation = -28801.415095 eV Core-core repulsion = 24947.349543 eV Total energy + Delta-G solvation = -3854.065551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.45715 -38.96043 -38.22139 -37.92645 -36.80292 -34.91500 -33.61264 -33.31358 -31.54083 -29.85151 -29.81265 -28.57586 -26.46887 -23.95229 -23.55666 -22.81895 -21.57139 -20.96123 -20.77831 -19.84234 -19.04116 -18.76653 -18.29453 -17.30675 -17.02611 -16.95583 -16.19865 -15.84397 -15.72758 -15.68260 -15.34287 -15.01469 -14.57625 -14.54242 -14.37946 -14.00400 -13.78826 -13.44872 -13.27693 -13.16043 -13.04782 -12.97178 -12.91983 -12.74837 -12.45125 -12.35547 -12.19583 -12.09544 -12.01372 -11.88357 -11.83164 -11.68549 -11.63098 -11.56651 -10.73236 -10.59902 -10.28592 -10.22686 -9.71612 -8.24107 -6.27571 -0.39659 0.57166 1.22971 1.35777 1.38923 1.42445 1.46124 1.50031 2.31043 2.37597 2.90702 3.10237 3.14882 3.38438 3.46040 3.69611 3.77234 3.84734 3.96655 4.16032 4.19692 4.26749 4.31849 4.35642 4.44566 4.47484 4.55352 4.62689 4.76889 4.78260 4.91863 4.92350 4.99910 5.00743 5.11736 5.15000 5.19230 5.35418 5.37414 5.38421 5.51020 5.70559 5.80237 5.83833 6.00660 6.35753 6.38820 6.76295 7.36065 8.90297 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.005796 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.013632 B = 4829.613454 C = 6686.525238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.185 4.185 3 C 0.149 3.851 4 N -0.978 5.978 5 C 0.221 3.779 6 C -0.530 4.530 7 H 0.046 0.954 8 C 0.029 3.971 9 N -0.932 5.932 10 Si 0.916 3.084 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.244 1.244 14 S 2.734 3.266 15 O -0.977 6.977 16 O -0.994 6.994 17 C -0.821 4.821 18 C 0.124 3.876 19 N -0.313 5.313 20 N -0.350 5.350 21 C 0.144 3.856 22 C -0.138 4.138 23 C -0.107 4.107 24 C -0.125 4.125 25 C -0.132 4.132 26 C 0.189 3.811 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.218 0.782 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 -1.219 -4.308 9.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.024 3.976 4 N -0.815 5.815 5 C 0.097 3.903 6 C -0.569 4.569 7 H 0.065 0.935 8 C -0.170 4.170 9 N -0.572 5.572 10 Si 0.740 3.260 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.168 1.168 14 S 2.825 3.175 15 O -0.968 6.968 16 O -0.985 6.985 17 C -0.921 4.921 18 C -0.065 4.065 19 N -0.132 5.132 20 N -0.127 5.127 21 C 0.043 3.957 22 C -0.177 4.177 23 C -0.145 4.145 24 C -0.163 4.163 25 C -0.171 4.171 26 C 0.034 3.966 27 H 0.135 0.865 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.144 0.856 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.115 0.885 44 H 0.055 0.945 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 8.901 -0.769 -4.739 10.113 hybrid contribution -1.017 0.142 1.099 1.504 sum 7.884 -0.627 -3.639 8.706 Atomic orbital electron populations 1.24041 0.95251 1.02919 0.98512 1.23392 0.96963 0.98509 1.01596 1.20414 0.93055 0.96315 0.87766 1.57129 1.25113 1.82625 1.16598 1.19363 0.96921 0.93915 0.80132 1.21546 1.43764 0.91363 1.00262 0.93535 1.25514 0.95267 0.95489 1.00739 1.70017 1.49259 1.09231 1.28673 0.86177 0.79260 0.80194 0.80357 1.19385 1.20948 1.16771 1.00305 0.71946 0.73122 0.72158 1.93486 1.86949 1.63975 1.52369 1.93469 1.80623 1.81850 1.42563 1.31532 1.30051 1.29216 1.01304 1.23848 0.94173 0.91627 0.96863 1.77215 1.21990 1.18229 0.95746 1.49570 1.39337 1.19895 1.03939 1.22559 0.92495 0.82945 0.97678 1.22933 1.01640 0.99941 0.93164 1.22450 0.96183 0.95899 0.99947 1.22341 0.97849 1.02096 0.94020 1.22558 0.98104 0.98111 0.98301 1.22373 0.88919 0.86326 0.98954 0.86506 0.88039 0.87257 0.90032 0.88791 0.93527 0.94206 0.92623 0.76541 0.85572 0.91480 0.87622 0.88230 0.89856 0.89809 0.93901 0.88486 0.94485 0.79620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 14.32 67.78 0.97 -3.29 16 2 C -0.18 -5.48 9.84 25.65 0.25 -5.22 16 3 C 0.15 5.00 5.78 85.63 0.50 5.49 16 4 N -0.98 -38.57 2.75 -523.93 -1.44 -40.01 16 5 C 0.22 9.97 4.50 85.63 0.39 10.36 16 6 C -0.53 -27.66 9.94 25.60 0.25 -27.41 16 7 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16 8 C 0.03 1.58 5.47 84.65 0.46 2.04 16 9 N -0.93 -53.43 13.96 21.45 0.30 -53.13 16 10 Si 0.92 41.13 27.47 68.60 1.88 43.02 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 14 S 2.73 106.32 5.79 -56.49 -0.33 105.99 16 15 O -0.98 -37.48 16.84 -128.00 -2.16 -39.63 16 16 O -0.99 -43.45 16.40 -128.00 -2.10 -45.55 16 17 C -0.82 -30.64 6.17 21.99 0.14 -30.50 16 18 C 0.12 4.20 11.82 85.24 1.01 5.21 16 19 N -0.31 -10.93 12.58 -57.02 -0.72 -11.64 16 20 N -0.35 -11.74 3.45 -324.05 -1.12 -12.85 16 21 C 0.14 3.71 4.01 45.71 0.18 3.89 16 22 C -0.14 -2.93 6.37 31.67 0.20 -2.73 16 23 C -0.11 -1.99 6.91 31.89 0.22 -1.77 16 24 C -0.13 -3.24 6.83 31.67 0.22 -3.02 16 25 C -0.13 -3.71 6.59 31.32 0.21 -3.51 16 26 C 0.19 6.98 10.17 83.54 0.85 7.83 16 27 H 0.12 2.39 8.06 -2.91 -0.02 2.36 16 28 H 0.10 2.49 7.84 -2.91 -0.02 2.47 16 29 H 0.11 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.08 2.80 7.76 -2.39 -0.02 2.78 16 31 H 0.09 2.78 7.61 -2.39 -0.02 2.77 16 32 H 0.05 2.03 7.16 -2.39 -0.02 2.02 16 33 H 0.04 1.84 6.34 -2.39 -0.02 1.83 16 34 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 35 H 0.22 5.79 8.06 -2.91 -0.02 5.77 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.69 16 37 H 0.07 1.66 5.94 -2.39 -0.01 1.64 16 38 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.04 1.39 7.92 -2.39 -0.02 1.37 16 45 H 0.19 6.74 6.88 -2.91 -0.02 6.72 16 Total: -1.00 -68.36 383.69 1.09 -67.28 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.92 Total: 29.17 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 5.84 Total: -42.63 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -2.98 Total: -117.64 kcal Atomic # 8 Polarization: -80.93 SS G_CDS: -4.25 Total: -85.18 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.02 kcal Atomic # 16 Polarization: 106.32 SS G_CDS: -0.33 Total: 105.99 kcal Total: -68.36 1.09 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601419209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.384 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds