Wall clock time and date at job start Tue Mar 31 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 C 1.50700 * 109.46725 * 240.00019 * 2 1 3 5 5 C 1.33534 * 125.97157 * 239.99977 * 4 2 1 6 6 N 1.31906 * 114.56144 * 179.97438 * 5 4 2 7 7 C 1.29682 * 116.93496 * 359.97438 * 6 5 4 8 8 N 1.38744 * 124.94922 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99884 * 359.97438 * 8 7 6 10 10 O 1.21382 * 119.99985 * 359.97438 * 9 8 7 11 11 C 1.49307 * 119.99913 * 180.02562 * 9 8 7 12 12 O 1.21364 * 120.00042 * 355.39800 * 11 9 8 13 13 N 1.34778 * 119.99919 * 175.39876 * 11 9 8 14 14 C 1.46496 * 120.00215 * 1.88249 * 13 11 9 15 15 C 1.50697 * 109.47419 * 82.44062 * 14 13 11 16 16 H 1.07997 * 119.99982 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46938 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47465 * 120.00075 * 19 17 15 22 22 H 1.48498 * 109.47672 * 240.00246 * 19 17 15 23 23 C 1.46507 * 119.99888 * 181.87170 * 13 11 9 24 24 C 1.52997 * 109.47368 * 301.10019 * 23 13 11 25 25 C 1.53003 * 109.46703 * 61.10279 * 23 13 11 26 26 S 1.70974 * 110.10469 * 359.76360 * 7 6 5 27 27 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46747 * 59.99400 * 1 2 3 29 29 H 1.09004 * 109.46590 * 299.99987 * 1 2 3 30 30 H 1.08998 * 109.46747 * 120.00599 * 2 1 3 31 31 H 1.09001 * 109.46898 * 60.00594 * 3 2 1 32 32 H 1.09007 * 109.46707 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47359 * 299.99930 * 3 2 1 34 34 H 1.07992 * 122.71990 * 359.96697 * 5 4 2 35 35 H 0.97007 * 120.00098 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47415 * 202.44985 * 14 13 11 37 37 H 1.09004 * 109.46544 * 322.44141 * 14 13 11 38 38 H 0.96998 * 120.00139 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.46975 * 181.09833 * 23 13 11 40 40 H 1.09004 * 109.47015 * 67.91542 * 24 23 13 41 41 H 1.09001 * 109.46890 * 187.90955 * 24 23 13 42 42 H 1.09002 * 109.47311 * 307.91501 * 24 23 13 43 43 H 1.09001 * 109.47115 * 61.38676 * 25 23 13 44 44 H 1.09003 * 109.46996 * 181.38362 * 25 23 13 45 45 H 1.09002 * 109.47225 * 301.38246 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8032 -1.8007 -1.2470 6 7 3.1106 -2.2365 -2.4534 7 6 2.6365 -1.5677 -3.4582 8 7 2.8549 -1.8770 -4.7930 9 6 3.6105 -2.9432 -5.1227 10 8 4.1002 -3.6326 -4.2519 11 6 3.8460 -3.2758 -6.5591 12 8 3.2901 -2.6374 -7.4288 13 7 4.6759 -4.2849 -6.8899 14 6 5.3147 -5.0821 -5.8398 15 6 4.3580 -6.1444 -5.3633 16 1 3.3727 -6.2186 -5.7993 17 6 4.7404 -7.0215 -4.3707 18 7 5.9401 -6.9308 -3.8394 19 14 3.5548 -8.3388 -3.7805 20 1 2.2792 -8.2298 -4.5331 21 1 4.1507 -9.6796 -4.0090 22 1 3.2919 -8.1547 -2.3306 23 6 4.9389 -4.5848 -8.2996 24 6 3.6222 -4.9153 -9.0051 25 6 5.5845 -3.3692 -8.9677 26 16 1.6981 -0.2526 -2.8985 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 3.1471 -2.2861 -0.3458 35 1 2.4638 -1.3259 -5.4889 36 1 6.2130 -5.5541 -6.2377 37 1 5.5838 -4.4346 -5.0052 38 1 6.2090 -7.5477 -3.1408 39 1 5.6129 -5.4385 -8.3697 40 1 3.0037 -4.0192 -9.0584 41 1 3.8302 -5.2737 -10.0132 42 1 3.0945 -5.6882 -8.4462 43 1 6.5346 -3.1488 -8.4809 44 1 5.7578 -3.5835 -10.0223 45 1 4.9211 -2.5091 -8.8759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617324104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:24 Heat of formation + Delta-G solvation = -7.418610 kcal Electronic energy + Delta-G solvation = -27779.339525 eV Core-core repulsion = 23924.860915 eV Total energy + Delta-G solvation = -3854.478610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.58013 -39.50879 -38.04043 -36.09181 -35.69200 -34.17728 -32.96099 -31.37441 -28.81387 -27.37280 -27.05638 -26.73908 -25.81994 -23.92465 -22.64811 -22.09583 -21.30513 -19.84295 -19.17385 -17.75465 -16.72617 -16.64238 -16.40701 -15.62963 -15.36806 -15.07080 -14.74226 -14.48951 -14.33650 -14.22442 -13.89807 -13.64334 -13.60203 -13.12435 -13.06735 -12.65937 -12.42961 -12.22724 -11.85142 -11.79757 -11.64726 -11.57647 -11.53549 -11.45363 -11.06608 -10.92216 -10.88764 -10.83897 -10.75918 -10.44393 -10.20983 -9.76164 -9.62013 -9.41333 -9.12064 -8.58739 -8.23689 -8.03007 -7.81090 -5.99685 -4.01918 0.82784 1.03441 1.73563 2.14871 2.82356 3.11813 3.32923 3.40843 3.43895 3.86580 3.93220 4.46921 4.53890 4.69976 4.74416 4.93451 5.08768 5.28658 5.37359 5.38227 5.40594 5.52740 5.56737 5.58861 5.70607 5.75721 5.79738 5.98466 6.01488 6.03750 6.05337 6.07094 6.24037 6.33650 6.44096 6.58142 6.69313 6.79770 7.08729 7.39403 7.45279 7.88832 7.99658 8.12114 8.21631 8.37694 8.65751 8.98691 9.61204 11.09345 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011099 B = 0.003828 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.135453 B = 7312.233488 C = 9121.998201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.010 4.010 3 C -0.146 4.146 4 C -0.245 4.245 5 C 0.076 3.924 6 N -0.472 5.472 7 C 0.285 3.715 8 N -0.624 5.624 9 C 0.476 3.524 10 O -0.377 6.377 11 C 0.515 3.485 12 O -0.557 6.557 13 N -0.552 5.552 14 C 0.223 3.777 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.071 3.929 18 N -0.888 5.888 19 Si 0.893 3.107 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.283 1.283 23 C 0.143 3.857 24 C -0.165 4.165 25 C -0.167 4.167 26 S 0.106 5.894 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.175 0.825 35 H 0.426 0.574 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.261 0.739 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 15.460 1.814 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.204 4.204 4 C -0.367 4.367 5 C -0.076 4.076 6 N -0.193 5.193 7 C -0.084 4.084 8 N -0.278 5.278 9 C 0.254 3.746 10 O -0.238 6.238 11 C 0.297 3.703 12 O -0.439 6.439 13 N -0.282 5.282 14 C 0.104 3.896 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.131 4.131 18 N -0.526 5.526 19 Si 0.721 3.279 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.209 1.209 23 C 0.040 3.960 24 C -0.223 4.223 25 C -0.225 4.225 26 S 0.356 5.644 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.192 0.808 35 H 0.264 0.736 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.276 15.349 1.432 17.047 hybrid contribution -0.448 -1.188 0.847 1.527 sum -7.725 14.161 2.280 16.291 Atomic orbital electron populations 1.21925 0.94225 1.02392 1.01933 1.19509 0.95607 0.95334 0.92713 1.21918 1.01626 0.94941 1.01931 1.25636 1.10464 1.04066 0.96545 1.21631 0.97002 0.93825 0.95097 1.66618 1.25226 1.29863 0.97546 1.23661 0.98915 0.95946 0.89919 1.42931 1.51552 1.30540 1.02800 1.20742 0.81193 0.81209 0.91440 1.91072 1.39839 1.43299 1.49548 1.19502 0.81136 0.81990 0.87679 1.90597 1.50502 1.52943 1.49883 1.48411 1.42091 1.29415 1.08290 1.20104 0.93119 0.91154 0.85209 1.21213 1.00148 1.13853 1.20312 0.92782 1.24785 0.95109 0.97491 0.95736 1.69921 1.18451 1.37506 1.26753 0.86531 0.81206 0.81340 0.78834 1.19997 1.21077 1.20928 1.21073 0.97218 0.97696 0.80019 1.22174 0.97880 1.02842 0.99391 1.22199 1.00856 0.99545 0.99885 1.83660 1.50688 1.29354 1.00696 0.92152 0.92559 0.92082 0.89181 0.92101 0.92170 0.92557 0.80800 0.73577 0.94939 0.91208 0.92916 0.89091 0.90757 0.92586 0.92178 0.92868 0.92112 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.13 37.16 0.34 -0.85 16 2 C -0.01 -0.09 3.32 -91.77 -0.30 -0.40 16 3 C -0.15 -1.15 9.14 37.16 0.34 -0.81 16 4 C -0.24 -2.98 5.14 -35.95 -0.18 -3.17 16 5 C 0.08 1.14 11.22 -19.17 -0.21 0.93 16 6 N -0.47 -9.03 8.64 -15.17 -0.13 -9.17 16 7 C 0.28 4.78 8.01 -87.55 -0.70 4.08 16 8 N -0.62 -10.64 5.39 -13.55 -0.07 -10.71 16 9 C 0.48 10.03 7.71 -11.65 -0.09 9.94 16 10 O -0.38 -9.47 10.90 5.47 0.06 -9.42 16 11 C 0.52 10.62 7.07 -11.65 -0.08 10.54 16 12 O -0.56 -10.89 12.79 5.48 0.07 -10.82 16 13 N -0.55 -11.73 2.43 -168.03 -0.41 -12.13 16 14 C 0.22 5.61 4.77 -5.20 -0.02 5.59 16 15 C -0.52 -14.32 8.11 -34.44 -0.28 -14.60 16 16 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 18 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 19 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 23 C 0.14 2.55 3.28 -67.93 -0.22 2.32 16 24 C -0.17 -2.75 8.96 37.16 0.33 -2.41 16 25 C -0.17 -2.53 9.15 37.16 0.34 -2.19 16 26 S 0.11 1.29 22.97 -107.50 -2.47 -1.18 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.73 8.10 -51.93 -0.42 0.30 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 35 H 0.43 5.93 8.30 -40.82 -0.34 5.59 16 36 H 0.03 0.84 7.78 -51.93 -0.40 0.44 16 37 H 0.07 1.94 5.55 -51.93 -0.29 1.65 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.09 1.60 7.71 -51.93 -0.40 1.20 16 40 H 0.07 1.29 6.30 -51.93 -0.33 0.96 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.20 6.28 -51.93 -0.33 0.87 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -32.71 383.18 -9.00 -41.72 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.69 Total: 3.27 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.85 Total: 10.91 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.12 Total: -57.51 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.13 Total: -20.24 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.47 Total: -1.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.71 -9.00 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617324104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.298 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds