Wall clock time and date at job start Tue Mar 31 2020 22:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47083 * 2 1 4 4 C 1.50700 * 109.46725 * 240.00019 * 2 1 3 5 5 C 1.33534 * 125.97157 * 239.99977 * 4 2 1 6 6 N 1.31906 * 114.56144 * 179.97438 * 5 4 2 7 7 C 1.29682 * 116.93496 * 359.97438 * 6 5 4 8 8 N 1.38744 * 124.94922 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99884 * 359.97438 * 8 7 6 10 10 O 1.21382 * 119.99985 * 359.97438 * 9 8 7 11 11 C 1.49307 * 119.99913 * 180.02562 * 9 8 7 12 12 O 1.21364 * 120.00042 * 355.39800 * 11 9 8 13 13 N 1.34778 * 119.99919 * 175.39876 * 11 9 8 14 14 C 1.46496 * 120.00215 * 1.88249 * 13 11 9 15 15 C 1.50697 * 109.47419 * 82.44062 * 14 13 11 16 16 H 1.07997 * 119.99982 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46938 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47465 * 120.00075 * 19 17 15 22 22 H 1.48498 * 109.47672 * 240.00246 * 19 17 15 23 23 C 1.46507 * 119.99888 * 181.87170 * 13 11 9 24 24 C 1.52997 * 109.47368 * 301.10019 * 23 13 11 25 25 C 1.53003 * 109.46703 * 61.10279 * 23 13 11 26 26 S 1.70974 * 110.10469 * 359.76360 * 7 6 5 27 27 H 1.08999 * 109.47353 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46747 * 59.99400 * 1 2 3 29 29 H 1.09004 * 109.46590 * 299.99987 * 1 2 3 30 30 H 1.08998 * 109.46747 * 120.00599 * 2 1 3 31 31 H 1.09001 * 109.46898 * 60.00594 * 3 2 1 32 32 H 1.09007 * 109.46707 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47359 * 299.99930 * 3 2 1 34 34 H 1.07992 * 122.71990 * 359.96697 * 5 4 2 35 35 H 0.97007 * 120.00098 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47415 * 202.44985 * 14 13 11 37 37 H 1.09004 * 109.46544 * 322.44141 * 14 13 11 38 38 H 0.96998 * 120.00139 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.46975 * 181.09833 * 23 13 11 40 40 H 1.09004 * 109.47015 * 67.91542 * 24 23 13 41 41 H 1.09001 * 109.46890 * 187.90955 * 24 23 13 42 42 H 1.09002 * 109.47311 * 307.91501 * 24 23 13 43 43 H 1.09001 * 109.47115 * 61.38676 * 25 23 13 44 44 H 1.09003 * 109.46996 * 181.38362 * 25 23 13 45 45 H 1.09002 * 109.47225 * 301.38246 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8032 -1.8007 -1.2470 6 7 3.1106 -2.2365 -2.4534 7 6 2.6365 -1.5677 -3.4582 8 7 2.8549 -1.8770 -4.7930 9 6 3.6105 -2.9432 -5.1227 10 8 4.1002 -3.6326 -4.2519 11 6 3.8460 -3.2758 -6.5591 12 8 3.2901 -2.6374 -7.4288 13 7 4.6759 -4.2849 -6.8899 14 6 5.3147 -5.0821 -5.8398 15 6 4.3580 -6.1444 -5.3633 16 1 3.3727 -6.2186 -5.7993 17 6 4.7404 -7.0215 -4.3707 18 7 5.9401 -6.9308 -3.8394 19 14 3.5548 -8.3388 -3.7805 20 1 2.2792 -8.2298 -4.5331 21 1 4.1507 -9.6796 -4.0090 22 1 3.2919 -8.1547 -2.3306 23 6 4.9389 -4.5848 -8.2996 24 6 3.6222 -4.9153 -9.0051 25 6 5.5845 -3.3692 -8.9677 26 16 1.6981 -0.2526 -2.8985 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 3.1471 -2.2861 -0.3458 35 1 2.4638 -1.3259 -5.4889 36 1 6.2130 -5.5541 -6.2377 37 1 5.5838 -4.4346 -5.0052 38 1 6.2090 -7.5477 -3.1408 39 1 5.6129 -5.4385 -8.3697 40 1 3.0037 -4.0192 -9.0584 41 1 3.8302 -5.2737 -10.0132 42 1 3.0945 -5.6882 -8.4462 43 1 6.5346 -3.1488 -8.4809 44 1 5.7578 -3.5835 -10.0223 45 1 4.9211 -2.5091 -8.8759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617324104.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:23 Heat of formation + Delta-G solvation = -27.493273 kcal Electronic energy + Delta-G solvation = -27780.210028 eV Core-core repulsion = 23924.860915 eV Total energy + Delta-G solvation = -3855.349112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.10746 -40.85362 -39.51916 -37.58936 -36.79890 -35.49336 -34.95375 -33.09121 -29.95761 -29.02375 -28.03514 -27.99459 -27.24552 -25.41249 -24.52357 -23.40367 -22.32086 -21.12319 -20.50068 -19.18628 -18.68009 -18.05639 -17.83417 -17.18851 -16.95372 -16.62491 -16.18986 -15.93920 -15.79645 -15.39793 -15.03546 -14.88822 -14.70003 -14.60902 -14.37460 -14.05937 -13.90127 -13.66202 -13.28715 -13.05693 -12.83721 -12.80932 -12.73523 -12.69528 -12.58021 -12.43330 -12.23067 -12.20492 -12.14991 -11.75920 -11.66056 -11.63241 -11.43292 -10.76187 -10.54452 -10.19996 -9.96700 -9.60832 -9.19449 -8.16308 -6.24572 -0.38279 -0.11797 0.57901 0.63282 1.32979 1.36128 1.41797 1.46192 1.86674 2.29968 2.37783 2.48670 3.17745 3.19514 3.68035 3.81559 3.99881 4.02629 4.22155 4.25138 4.33452 4.51909 4.62151 4.63946 4.80243 4.80396 4.80961 4.91496 4.98819 4.99700 5.02828 5.04162 5.10753 5.19455 5.25665 5.34464 5.37691 5.39213 5.42263 5.64931 5.73030 5.82922 6.09209 6.29301 6.62176 6.80389 6.97439 7.10572 7.41649 8.92217 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011099 B = 0.003828 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.135453 B = 7312.233488 C = 9121.998201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.014 4.014 3 C -0.145 4.145 4 C -0.220 4.220 5 C 0.038 3.962 6 N -0.521 5.521 7 C 0.235 3.765 8 N -0.611 5.611 9 C 0.476 3.524 10 O -0.430 6.430 11 C 0.514 3.486 12 O -0.545 6.545 13 N -0.559 5.559 14 C 0.243 3.757 15 C -0.518 4.518 16 H 0.043 0.957 17 C 0.022 3.978 18 N -0.919 5.919 19 Si 0.950 3.050 20 H -0.273 1.273 21 H -0.270 1.270 22 H -0.287 1.287 23 C 0.130 3.870 24 C -0.155 4.155 25 C -0.155 4.155 26 S 0.195 5.805 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.182 0.818 35 H 0.439 0.561 36 H 0.021 0.979 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 17.250 1.659 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.202 4.202 4 C -0.342 4.342 5 C -0.112 4.112 6 N -0.243 5.243 7 C -0.131 4.131 8 N -0.267 5.267 9 C 0.254 3.746 10 O -0.294 6.294 11 C 0.296 3.704 12 O -0.426 6.426 13 N -0.289 5.289 14 C 0.123 3.877 15 C -0.556 4.556 16 H 0.061 0.939 17 C -0.177 4.177 18 N -0.559 5.559 19 Si 0.776 3.224 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.214 1.214 23 C 0.028 3.972 24 C -0.213 4.213 25 C -0.213 4.213 26 S 0.446 5.554 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.198 0.802 35 H 0.280 0.720 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.169 17.193 1.234 19.524 hybrid contribution 0.022 -1.542 0.969 1.821 sum -9.147 15.651 2.204 18.262 Atomic orbital electron populations 1.21932 0.93002 1.02229 1.03183 1.19755 0.96487 0.95941 0.91368 1.21921 1.01250 0.93908 1.03164 1.26280 1.07303 1.02281 0.98338 1.21768 0.99372 0.95719 0.94354 1.66522 1.26480 1.32057 0.99248 1.23853 1.01533 0.98533 0.89222 1.42635 1.50667 1.29563 1.03818 1.20887 0.80956 0.81601 0.91160 1.91052 1.42348 1.45437 1.50609 1.19535 0.81076 0.81955 0.87841 1.90587 1.49961 1.52479 1.49583 1.48364 1.42250 1.29305 1.09016 1.19556 0.92364 0.90339 0.85476 1.21373 0.99835 1.14316 1.20097 0.93909 1.25519 0.96563 0.99611 0.96020 1.70021 1.19959 1.38541 1.27427 0.85638 0.79397 0.79536 0.77825 1.19751 1.19478 1.21358 1.21419 0.98230 0.99128 0.78394 1.22095 0.96702 1.01770 1.00737 1.22109 1.00042 0.97644 1.01523 1.83278 1.47495 1.25393 0.99214 0.93034 0.92448 0.89795 0.87986 0.89849 0.92833 0.92439 0.80155 0.72034 0.96116 0.93824 0.92847 0.89121 0.91427 0.89090 0.94508 0.93107 0.88787 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.13 71.98 0.66 -1.23 16 2 C -0.01 -0.22 3.32 -11.54 -0.04 -0.25 16 3 C -0.14 -1.81 9.14 71.98 0.66 -1.15 16 4 C -0.22 -5.05 5.14 24.62 0.13 -4.92 16 5 C 0.04 1.17 11.22 83.61 0.94 2.10 16 6 N -0.52 -20.76 8.64 -201.92 -1.74 -22.51 16 7 C 0.24 8.03 8.01 179.28 1.44 9.47 16 8 N -0.61 -21.32 5.39 -315.13 -1.70 -23.01 16 9 C 0.48 20.89 7.71 87.22 0.67 21.57 16 10 O -0.43 -22.90 10.90 -3.35 -0.04 -22.93 16 11 C 0.51 21.67 7.07 87.22 0.62 22.29 16 12 O -0.54 -21.13 12.79 -3.29 -0.04 -21.17 16 13 N -0.56 -24.38 2.43 -803.88 -1.95 -26.33 16 14 C 0.24 12.81 4.77 85.63 0.41 13.22 16 15 C -0.52 -29.72 8.11 25.60 0.21 -29.51 16 16 H 0.04 2.50 7.81 -2.91 -0.02 2.47 16 17 C 0.02 1.31 5.46 84.65 0.46 1.77 16 18 N -0.92 -56.12 13.29 21.45 0.28 -55.84 16 19 Si 0.95 46.69 29.54 68.60 2.03 48.71 16 20 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 C 0.13 4.58 3.28 44.99 0.15 4.73 16 24 C -0.16 -5.00 8.96 71.98 0.65 -4.35 16 25 C -0.16 -4.49 9.15 71.98 0.66 -3.83 16 26 S 0.20 4.42 22.97 -56.49 -1.30 3.12 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.73 8.05 -2.39 -0.02 0.72 16 29 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 34 H 0.18 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.44 12.15 8.30 -92.70 -0.77 11.38 16 36 H 0.02 1.13 7.78 -2.39 -0.02 1.11 16 37 H 0.04 2.58 5.55 -2.39 -0.01 2.57 16 38 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.09 3.17 7.71 -2.39 -0.02 3.15 16 40 H 0.07 2.25 6.30 -2.38 -0.02 2.24 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 1.97 6.28 -2.39 -0.01 1.96 16 Total: -1.00 -74.19 383.18 3.38 -70.81 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.24 Total: 19.27 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: 7.60 Total: 29.89 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -5.11 Total: -127.69 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.08 Total: -44.10 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.30 Total: 3.12 kcal Total: -74.19 3.38 -70.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617324104.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.317 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds