Wall clock time and date at job start Wed Apr 1 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 N 1.46498 * 109.47238 * 119.99633 * 2 1 3 5 5 C 1.34777 * 119.99805 * 85.00189 * 4 2 1 6 6 O 1.21291 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00383 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.47132 * 179.97438 * 7 5 4 9 9 C 1.34780 * 119.99868 * 180.02562 * 8 7 5 10 10 S 1.71204 * 119.99615 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00581 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00646 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47443 * 270.00265 * 12 11 9 14 14 H 1.08001 * 120.00056 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00480 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99528 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00487 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46990 * 59.99741 * 17 15 13 19 19 H 1.48497 * 109.47011 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47086 * 300.00255 * 17 15 13 21 21 C 1.46505 * 119.99455 * 359.97438 * 11 9 8 22 22 C 1.50703 * 109.47064 * 90.00114 * 21 11 9 23 23 C 1.34515 * 125.79060 * 89.99944 * 22 21 11 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69282 * 22 21 11 27 27 H 1.09004 * 109.46906 * 299.99964 * 1 2 3 28 28 H 1.09003 * 109.47248 * 59.99762 * 1 2 3 29 29 H 1.08997 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46906 * 240.00036 * 2 1 3 31 31 H 1.08996 * 109.47164 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47321 * 300.00193 * 3 2 1 33 33 H 1.08994 * 109.47383 * 60.00190 * 3 2 1 34 34 H 0.97001 * 120.00415 * 265.00208 * 4 2 1 35 35 H 1.09005 * 109.46683 * 60.00082 * 7 5 4 36 36 H 1.09002 * 109.46743 * 300.00158 * 7 5 4 37 37 H 0.96993 * 120.00298 * 0.02562 * 8 7 5 38 38 H 1.09006 * 109.46911 * 30.00087 * 12 11 9 39 39 H 1.08996 * 109.47170 * 149.99599 * 12 11 9 40 40 H 0.97003 * 119.99687 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47068 * 210.00083 * 21 11 9 42 42 H 1.09001 * 109.47372 * 330.00170 * 21 11 9 43 43 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 44 44 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 45 45 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8582 -2.6677 0.2026 7 6 2.6500 -2.7425 2.4247 8 7 2.6986 -4.1844 2.1703 9 6 3.1199 -5.0252 3.1358 10 16 3.5977 -4.4080 4.6596 11 7 3.1652 -6.3517 2.9019 12 6 3.6237 -7.2654 3.9511 13 6 5.1151 -7.4502 3.8400 14 1 5.6664 -6.9384 3.0649 15 6 5.7760 -8.2725 4.7276 16 7 5.1048 -8.8953 5.6717 17 14 7.6247 -8.5020 4.5894 18 1 8.2997 -7.1886 4.7463 19 1 8.0895 -9.4272 5.6539 20 1 7.9546 -9.0721 3.2585 21 6 2.7558 -6.8798 1.5981 22 6 3.9498 -6.9323 0.6800 23 6 4.7913 -7.9727 0.5426 24 6 5.7585 -7.5932 -0.4163 25 6 5.4499 -6.3439 -0.8079 26 8 4.3507 -5.9504 -0.1440 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.2491 -0.1822 1.9895 35 1 1.9778 -2.5436 3.2593 36 1 3.6494 -2.3824 2.6691 37 1 2.4276 -4.5341 1.3072 38 1 3.3811 -6.8476 4.9282 39 1 3.1285 -8.2295 3.8352 40 1 5.5699 -9.4735 6.2965 41 1 2.3498 -7.8835 1.7239 42 1 1.9937 -6.2310 1.1663 43 1 4.7378 -8.9170 1.0639 44 1 6.5863 -8.1916 -0.7671 45 1 5.9917 -5.7580 -1.5356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727270752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:37 Heat of formation + Delta-G solvation = 4.546315 kcal Electronic energy + Delta-G solvation = -27669.379354 eV Core-core repulsion = 23815.419582 eV Total energy + Delta-G solvation = -3853.959772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.22130 -40.26116 -38.62355 -36.42191 -35.08263 -32.68454 -32.60484 -31.99381 -30.65230 -28.49058 -27.60054 -26.99120 -25.77053 -23.13447 -21.89394 -21.55697 -21.36471 -20.76484 -20.05115 -18.26396 -17.22290 -17.11252 -16.64894 -16.26382 -16.12803 -15.74057 -15.51829 -14.80586 -14.64678 -14.52017 -14.35578 -13.87679 -13.60782 -13.44260 -13.21810 -12.86545 -12.71653 -12.57368 -12.50847 -12.39633 -12.27568 -11.77747 -11.68093 -11.39764 -11.32586 -11.31797 -10.81579 -10.64954 -10.32560 -10.19045 -10.09520 -9.69294 -9.46882 -9.43453 -8.39968 -8.36343 -8.08901 -6.99464 -6.46547 -5.99462 -4.00614 1.88545 2.18716 2.35531 2.52604 2.85549 3.04171 3.28629 3.36644 3.41159 3.44364 3.49067 3.91674 4.35822 4.50773 4.56701 4.67767 4.83037 4.86840 5.01661 5.18898 5.29459 5.34724 5.36592 5.37610 5.39935 5.42585 5.47246 5.55206 5.57657 5.72331 5.89149 6.13440 6.15507 6.29532 6.33547 6.39633 6.59438 6.86406 7.15294 7.17960 7.43817 7.50496 7.57327 7.88877 7.95511 7.98200 8.20617 8.98208 9.61202 11.09522 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003476 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.936251 B = 8053.614886 C = 9140.011513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 C -0.161 4.161 4 N -0.723 5.723 5 C 0.511 3.489 6 O -0.538 6.538 7 C 0.113 3.887 8 N -0.692 5.692 9 C 0.567 3.433 10 S -0.649 6.649 11 N -0.539 5.539 12 C 0.238 3.762 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.068 3.932 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.180 3.820 22 C -0.040 4.040 23 C -0.157 4.157 24 C -0.214 4.214 25 C -0.044 4.044 26 O -0.176 6.176 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.405 0.595 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.403 0.597 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.263 0.737 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.153 0.847 44 H 0.144 0.856 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 14.165 -14.714 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 C -0.219 4.219 4 N -0.376 5.376 5 C 0.297 3.703 6 O -0.414 6.414 7 C -0.015 4.015 8 N -0.329 5.329 9 C 0.208 3.792 10 S -0.520 6.520 11 N -0.245 5.245 12 C 0.120 3.880 13 C -0.546 4.546 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.205 1.205 21 C 0.053 3.947 22 C -0.092 4.092 23 C -0.177 4.177 24 C -0.234 4.234 25 C -0.113 4.113 26 O -0.073 6.073 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.170 0.830 44 H 0.162 0.838 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.868 14.217 -14.301 21.646 hybrid contribution 1.226 -0.560 -0.903 1.622 sum -6.643 13.656 -15.204 21.489 Atomic orbital electron populations 1.22194 0.95154 1.02766 1.02149 1.20959 0.94255 0.92867 0.88711 1.22082 1.01904 0.94865 1.03023 1.45975 1.67765 1.06640 1.17193 1.20748 0.77211 0.82776 0.89562 1.90706 1.50002 1.65785 1.34956 1.21181 1.05016 0.79936 0.95376 1.44514 1.66994 1.05788 1.15645 1.22100 0.81658 0.83456 0.91992 1.93129 1.69160 1.78867 1.10870 1.47908 1.58915 1.03940 1.13742 1.20016 0.95642 0.86054 0.86269 1.21078 0.91534 1.27103 1.14899 0.92469 1.24777 0.98087 0.95714 0.94875 1.69909 1.35826 1.30230 1.17274 0.86614 0.85780 0.78033 0.77369 1.20174 1.21341 1.20452 1.20047 0.90531 1.02628 0.81457 1.22565 1.01559 0.88091 0.96952 1.21620 0.95256 1.01015 0.99828 1.21823 1.02590 0.97002 1.01955 1.23876 0.89803 0.96824 1.00759 1.83980 1.37950 1.40688 1.44656 0.92327 0.91620 0.92012 0.89380 0.91807 0.90895 0.91873 0.76046 0.86971 0.87032 0.75599 0.90170 0.94441 0.92748 0.86034 0.90113 0.82959 0.83834 0.78731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 2 C 0.14 1.03 3.18 -67.93 -0.22 0.81 16 3 C -0.16 -0.81 9.38 37.16 0.35 -0.46 16 4 N -0.72 -5.98 5.08 -53.80 -0.27 -6.26 16 5 C 0.51 6.03 7.86 -10.99 -0.09 5.94 16 6 O -0.54 -8.04 15.33 5.55 0.09 -7.95 16 7 C 0.11 1.48 5.61 -5.19 -0.03 1.45 16 8 N -0.69 -11.22 5.39 -63.21 -0.34 -11.57 16 9 C 0.57 11.45 7.70 -86.92 -0.67 10.78 16 10 S -0.65 -15.52 27.17 -107.50 -2.92 -18.44 16 11 N -0.54 -10.91 2.44 -178.46 -0.44 -11.34 16 12 C 0.24 5.85 4.97 -5.20 -0.03 5.82 16 13 C -0.51 -13.72 9.14 -34.44 -0.31 -14.03 16 14 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 15 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 16 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.18 2.91 5.74 -5.19 -0.03 2.88 16 22 C -0.04 -0.70 6.90 -35.62 -0.25 -0.95 16 23 C -0.16 -2.76 10.40 -39.70 -0.41 -3.18 16 24 C -0.21 -3.37 10.91 -39.71 -0.43 -3.80 16 25 C -0.04 -0.66 12.09 29.41 0.36 -0.30 16 26 O -0.18 -2.99 10.65 5.68 0.06 -2.93 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.40 2.35 8.60 -40.82 -0.35 2.00 16 35 H 0.11 1.38 7.99 -51.93 -0.41 0.97 16 36 H 0.11 1.49 7.99 -51.93 -0.42 1.07 16 37 H 0.40 6.35 5.17 -40.82 -0.21 6.14 16 38 H 0.08 2.24 6.58 -51.93 -0.34 1.90 16 39 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 1.73 7.89 -51.93 -0.41 1.32 16 42 H 0.08 1.11 6.36 -51.93 -0.33 0.78 16 43 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 44 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 45 H 0.20 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -35.47 394.08 -10.29 -45.76 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.62 Total: 8.98 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.50 Total: 5.93 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.31 Total: -54.36 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.15 Total: -10.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: -15.52 SS G_CDS: -2.92 Total: -18.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.47 -10.29 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727270752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.308 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds