Wall clock time and date at job start Wed Apr 1 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 N 1.46498 * 109.47238 * 119.99633 * 2 1 3 5 5 C 1.34777 * 119.99805 * 85.00189 * 4 2 1 6 6 O 1.21291 * 119.99747 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00383 * 179.97438 * 5 4 2 8 8 N 1.46497 * 109.47132 * 179.97438 * 7 5 4 9 9 C 1.34780 * 119.99868 * 180.02562 * 8 7 5 10 10 S 1.71204 * 119.99615 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00581 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00646 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47443 * 270.00265 * 12 11 9 14 14 H 1.08001 * 120.00056 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00480 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99528 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00487 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46990 * 59.99741 * 17 15 13 19 19 H 1.48497 * 109.47011 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47086 * 300.00255 * 17 15 13 21 21 C 1.46505 * 119.99455 * 359.97438 * 11 9 8 22 22 C 1.50703 * 109.47064 * 90.00114 * 21 11 9 23 23 C 1.34515 * 125.79060 * 89.99944 * 22 21 11 24 24 C 1.41380 * 106.83832 * 179.97438 * 23 22 21 25 25 C 1.34506 * 106.84493 * 359.97438 * 24 23 22 26 26 O 1.34306 * 125.78568 * 269.69282 * 22 21 11 27 27 H 1.09004 * 109.46906 * 299.99964 * 1 2 3 28 28 H 1.09003 * 109.47248 * 59.99762 * 1 2 3 29 29 H 1.08997 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46906 * 240.00036 * 2 1 3 31 31 H 1.08996 * 109.47164 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47321 * 300.00193 * 3 2 1 33 33 H 1.08994 * 109.47383 * 60.00190 * 3 2 1 34 34 H 0.97001 * 120.00415 * 265.00208 * 4 2 1 35 35 H 1.09005 * 109.46683 * 60.00082 * 7 5 4 36 36 H 1.09002 * 109.46743 * 300.00158 * 7 5 4 37 37 H 0.96993 * 120.00298 * 0.02562 * 8 7 5 38 38 H 1.09006 * 109.46911 * 30.00087 * 12 11 9 39 39 H 1.08996 * 109.47170 * 149.99599 * 12 11 9 40 40 H 0.97003 * 119.99687 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47068 * 210.00083 * 21 11 9 42 42 H 1.09001 * 109.47372 * 330.00170 * 21 11 9 43 43 H 1.07996 * 126.58016 * 0.03378 * 23 22 21 44 44 H 1.08006 * 126.57610 * 179.97438 * 24 23 22 45 45 H 1.08005 * 125.79499 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1944 6 8 1.8582 -2.6677 0.2026 7 6 2.6500 -2.7425 2.4247 8 7 2.6986 -4.1844 2.1703 9 6 3.1199 -5.0252 3.1358 10 16 3.5977 -4.4080 4.6596 11 7 3.1652 -6.3517 2.9019 12 6 3.6237 -7.2654 3.9511 13 6 5.1151 -7.4502 3.8400 14 1 5.6664 -6.9384 3.0649 15 6 5.7760 -8.2725 4.7276 16 7 5.1048 -8.8953 5.6717 17 14 7.6247 -8.5020 4.5894 18 1 8.2997 -7.1886 4.7463 19 1 8.0895 -9.4272 5.6539 20 1 7.9546 -9.0721 3.2585 21 6 2.7558 -6.8798 1.5981 22 6 3.9498 -6.9323 0.6800 23 6 4.7913 -7.9727 0.5426 24 6 5.7585 -7.5932 -0.4163 25 6 5.4499 -6.3439 -0.8079 26 8 4.3507 -5.9504 -0.1440 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.2491 -0.1822 1.9895 35 1 1.9778 -2.5436 3.2593 36 1 3.6494 -2.3824 2.6691 37 1 2.4276 -4.5341 1.3072 38 1 3.3811 -6.8476 4.9282 39 1 3.1285 -8.2295 3.8352 40 1 5.5699 -9.4735 6.2965 41 1 2.3498 -7.8835 1.7239 42 1 1.9937 -6.2310 1.1663 43 1 4.7378 -8.9170 1.0639 44 1 6.5863 -8.1916 -0.7671 45 1 5.9917 -5.7580 -1.5356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727270752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:35 Heat of formation + Delta-G solvation = -18.340018 kcal Electronic energy + Delta-G solvation = -27670.371780 eV Core-core repulsion = 23815.419582 eV Total energy + Delta-G solvation = -3854.952197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.48846 -41.30031 -40.08889 -37.32656 -36.45619 -34.67032 -33.91026 -32.81711 -32.04781 -30.05066 -28.46012 -28.09199 -27.23903 -24.97526 -23.18727 -22.70233 -22.58244 -21.63086 -21.34530 -19.60707 -18.81806 -18.54206 -18.05164 -17.60223 -17.20918 -16.87562 -16.85466 -16.41995 -16.05402 -15.79365 -15.32259 -15.26578 -14.83451 -14.62187 -14.37982 -14.16962 -13.82411 -13.74599 -13.62045 -13.37280 -13.21107 -13.08124 -13.02712 -12.97865 -12.61406 -12.53710 -12.30756 -12.15455 -12.10480 -11.91966 -11.61908 -11.16804 -10.78854 -10.54268 -10.23530 -9.91361 -9.42908 -8.84463 -8.35830 -8.13187 -6.19614 0.39678 0.72399 1.08464 1.37959 1.39020 1.42658 1.47761 1.54776 1.72190 2.06787 2.18250 2.42531 2.51878 3.20811 3.52576 3.57145 3.83663 3.95287 4.12490 4.13650 4.25358 4.27488 4.31372 4.32230 4.34971 4.68002 4.73325 4.76235 4.90557 4.93605 4.98883 5.02914 5.09653 5.18424 5.25698 5.27500 5.33178 5.46266 5.60001 5.65131 5.71795 5.90786 6.10442 6.19427 6.31336 6.41858 6.82883 7.04387 7.44525 8.94902 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003476 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.936251 B = 8053.614886 C = 9140.011513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 C -0.154 4.154 4 N -0.705 5.705 5 C 0.518 3.482 6 O -0.570 6.570 7 C 0.110 3.890 8 N -0.671 5.671 9 C 0.584 3.416 10 S -0.728 6.728 11 N -0.541 5.541 12 C 0.256 3.744 13 C -0.502 4.502 14 H 0.044 0.956 15 C 0.021 3.979 16 N -0.923 5.923 17 Si 0.947 3.053 18 H -0.286 1.286 19 H -0.282 1.282 20 H -0.265 1.265 21 C 0.177 3.823 22 C -0.056 4.056 23 C -0.174 4.174 24 C -0.231 4.231 25 C -0.035 4.035 26 O -0.187 6.187 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.419 0.581 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.410 0.590 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.140 0.860 42 H 0.108 0.892 43 H 0.143 0.857 44 H 0.164 0.836 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 15.677 -16.886 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 C -0.211 4.211 4 N -0.357 5.357 5 C 0.303 3.697 6 O -0.450 6.450 7 C -0.017 4.017 8 N -0.306 5.306 9 C 0.221 3.779 10 S -0.601 6.601 11 N -0.246 5.246 12 C 0.136 3.864 13 C -0.541 4.541 14 H 0.062 0.938 15 C -0.178 4.178 16 N -0.563 5.563 17 Si 0.774 3.226 18 H -0.212 1.212 19 H -0.207 1.207 20 H -0.189 1.189 21 C 0.052 3.948 22 C -0.107 4.107 23 C -0.195 4.195 24 C -0.250 4.250 25 C -0.102 4.102 26 O -0.084 6.084 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.256 0.744 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.252 0.748 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.158 0.842 42 H 0.125 0.875 43 H 0.161 0.839 44 H 0.181 0.819 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.702 15.786 -16.520 24.113 hybrid contribution 1.122 -0.956 -0.365 1.519 sum -6.580 14.830 -16.885 23.416 Atomic orbital electron populations 1.22163 0.94689 1.01507 1.03522 1.21097 0.94599 0.94050 0.87334 1.22042 1.01811 0.92932 1.04351 1.45911 1.66202 1.05453 1.18181 1.20429 0.77101 0.83746 0.88387 1.90698 1.51825 1.66681 1.35769 1.21376 1.05527 0.78086 0.96698 1.44516 1.64637 1.06762 1.14693 1.21625 0.81279 0.83727 0.91256 1.93255 1.72613 1.79720 1.14472 1.47682 1.58751 1.03540 1.14650 1.19473 0.94525 0.86379 0.86019 1.21153 0.92651 1.26219 1.14062 0.93805 1.25459 1.01768 0.95811 0.94793 1.70001 1.37222 1.31052 1.18040 0.85771 0.81332 0.77432 0.78092 1.21233 1.20724 1.18935 1.20349 0.90945 1.04222 0.79270 1.22585 1.02086 0.88345 0.97695 1.21769 0.96228 1.00918 1.00544 1.22126 1.03053 0.97890 1.01903 1.24709 0.88581 0.96830 1.00097 1.83981 1.38822 1.40721 1.44857 0.91190 0.90079 0.94508 0.91280 0.91898 0.89617 0.90514 0.74382 0.85962 0.86948 0.74792 0.93691 0.94401 0.92740 0.84219 0.87451 0.83949 0.81864 0.74692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 71.98 0.68 -1.34 16 2 C 0.13 1.75 3.18 44.99 0.14 1.90 16 3 C -0.15 -1.12 9.38 71.98 0.68 -0.45 16 4 N -0.70 -10.39 5.08 -442.52 -2.25 -12.64 16 5 C 0.52 11.55 7.86 87.66 0.69 12.24 16 6 O -0.57 -16.42 15.33 -3.06 -0.05 -16.47 16 7 C 0.11 2.79 5.61 85.63 0.48 3.27 16 8 N -0.67 -21.19 5.39 -353.90 -1.91 -23.10 16 9 C 0.58 23.60 7.70 179.05 1.38 24.98 16 10 S -0.73 -35.69 27.17 -56.49 -1.53 -37.22 16 11 N -0.54 -21.89 2.44 -718.53 -1.75 -23.64 16 12 C 0.26 12.82 4.97 85.63 0.43 13.25 16 13 C -0.50 -27.46 9.14 25.60 0.23 -27.23 16 14 H 0.04 2.49 7.65 -2.91 -0.02 2.47 16 15 C 0.02 1.17 5.46 84.65 0.46 1.63 16 16 N -0.92 -54.37 13.29 21.45 0.28 -54.08 16 17 Si 0.95 45.47 29.54 68.60 2.03 47.49 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.18 5.54 5.74 85.63 0.49 6.04 16 22 C -0.06 -1.89 6.90 24.83 0.17 -1.71 16 23 C -0.17 -5.99 10.40 22.19 0.23 -5.76 16 24 C -0.23 -6.80 10.91 22.19 0.24 -6.56 16 25 C -0.03 -0.93 12.09 66.97 0.81 -0.12 16 26 O -0.19 -6.00 10.65 -2.58 -0.03 -6.03 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.22 7.58 -2.38 -0.02 1.20 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.42 3.91 8.60 -92.71 -0.80 3.12 16 35 H 0.12 2.91 7.99 -2.38 -0.02 2.89 16 36 H 0.11 2.91 7.99 -2.39 -0.02 2.89 16 37 H 0.41 12.34 5.17 -92.71 -0.48 11.86 16 38 H 0.05 2.61 6.58 -2.38 -0.02 2.59 16 39 H 0.04 1.89 7.89 -2.39 -0.02 1.87 16 40 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.14 3.83 7.89 -2.39 -0.02 3.81 16 42 H 0.11 2.77 6.36 -2.39 -0.02 2.75 16 43 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 44 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 45 H 0.24 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -78.36 394.08 1.65 -76.71 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.26 Total: 28.86 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 7.12 Total: 20.11 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -5.62 Total: -113.46 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.07 Total: -22.49 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: -35.69 SS G_CDS: -1.53 Total: -37.22 kcal Total: -78.36 1.65 -76.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727270752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.366 kcal (2) G-P(sol) polarization free energy of solvation -78.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds