Wall clock time and date at job start Wed Apr 1 2020 01:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 N 1.46503 * 109.46634 * 120.00225 * 2 1 3 5 5 C 1.34773 * 120.00455 * 85.27864 * 4 2 1 6 6 O 1.21283 * 120.00133 * 359.71601 * 5 4 2 7 7 C 1.50697 * 120.00099 * 179.72388 * 5 4 2 8 8 H 1.08997 * 109.47103 * 311.22698 * 7 5 4 9 9 C 1.47201 * 109.47566 * 71.22716 * 7 5 4 10 10 N 5.09681 * 82.13871 * 122.02542 * 2 1 3 11 11 C 1.50705 * 109.47031 * 191.23047 * 7 5 4 12 12 O 1.21409 * 119.99676 * 328.03769 * 11 7 5 13 13 C 1.41634 * 119.99915 * 148.04475 * 11 7 5 14 14 C 1.36612 * 125.49321 * 6.58012 * 13 11 7 15 15 C 1.41501 * 107.71796 * 180.02562 * 14 13 11 16 16 C 1.40121 * 133.29727 * 180.02562 * 15 14 13 17 17 C 1.36534 * 119.82938 * 180.02562 * 16 15 14 18 18 C 1.38886 * 120.61174 * 359.97438 * 17 16 15 19 19 C 1.37832 * 120.65047 * 0.02562 * 18 17 16 20 20 C 1.39101 * 119.82385 * 359.97438 * 19 18 17 21 21 N 1.37796 * 133.09032 * 180.34401 * 20 19 18 22 22 C 1.36803 * 125.63325 * 359.96348 * 21 20 19 23 23 H 1.08003 * 119.99820 * 134.75554 * 22 21 20 24 24 C 1.39063 * 120.00228 * 314.76318 * 22 21 20 25 25 N 1.31318 * 120.00251 * 160.20971 * 24 22 21 26 26 Si 1.86807 * 119.99852 * 340.20638 * 24 22 21 27 27 H 1.48497 * 109.46767 * 95.73313 * 26 24 22 28 28 H 1.48505 * 109.46970 * 215.73205 * 26 24 22 29 29 H 1.48500 * 109.47077 * 335.73381 * 26 24 22 30 30 H 1.08999 * 109.47137 * 60.00212 * 1 2 3 31 31 H 1.09004 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47278 * 299.99815 * 1 2 3 33 33 H 1.08999 * 109.47008 * 239.99274 * 2 1 3 34 34 H 1.08995 * 109.46748 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46863 * 299.99957 * 3 2 1 36 36 H 1.08996 * 109.46814 * 59.99901 * 3 2 1 37 37 H 0.97008 * 119.99413 * 264.99053 * 4 2 1 38 38 H 1.07997 * 126.14546 * 0.02927 * 14 13 11 39 39 H 1.08005 * 120.08241 * 0.02562 * 16 15 14 40 40 H 1.08003 * 119.69340 * 180.02562 * 17 16 15 41 41 H 1.08000 * 119.67663 * 179.97438 * 18 17 16 42 42 H 1.07997 * 120.08581 * 179.97438 * 19 18 17 43 43 H 0.97003 * 120.00382 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1523 -2.0317 1.1926 6 8 1.8638 -2.6674 0.2008 7 6 2.6604 -2.7415 2.4210 8 1 3.5620 -2.2455 2.7804 9 6 1.6290 -2.7053 3.4706 10 7 0.8329 -2.6774 4.2805 11 6 2.9780 -4.1742 2.0780 12 8 2.3327 -4.7522 1.2275 13 6 4.0294 -4.8464 2.7480 14 6 4.7406 -4.3522 3.8045 15 6 5.6936 -5.3296 4.1770 16 6 6.6784 -5.3812 5.1724 17 6 7.4678 -6.4890 5.2901 18 6 7.3041 -7.5685 4.4316 19 6 6.3424 -7.5417 3.4445 20 6 5.5258 -6.4244 3.3044 21 7 4.4985 -6.1116 2.4409 22 6 4.0234 -6.9172 1.4425 23 1 2.9587 -7.0399 1.3083 24 6 4.9110 -7.5782 0.6005 25 7 4.5109 -8.6248 -0.0842 26 14 6.6727 -6.9770 0.4433 27 1 7.5442 -7.7526 1.3621 28 1 7.1368 -7.1642 -0.9549 29 1 6.7376 -5.5364 0.7978 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 2.2490 -0.1823 1.9895 38 1 4.6006 -3.3886 4.2717 39 1 6.8127 -4.5468 5.8449 40 1 8.2259 -6.5266 6.0584 41 1 7.9371 -8.4370 4.5379 42 1 6.2234 -8.3860 2.7817 43 1 5.1302 -9.0861 -0.6713 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729888316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:43 Heat of formation + Delta-G solvation = 27.137486 kcal Electronic energy + Delta-G solvation = -29032.489917 eV Core-core repulsion = 25044.065821 eV Total energy + Delta-G solvation = -3988.424096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 9.56 seconds Orbital eigenvalues (eV) -41.10409 -40.20986 -38.26704 -36.56841 -36.19610 -35.86956 -33.79978 -32.53460 -31.58203 -30.62853 -29.33410 -28.34712 -27.45708 -25.00355 -23.93296 -22.23507 -21.23166 -20.79944 -20.47405 -19.47254 -18.55693 -18.00455 -17.16684 -16.34978 -15.90540 -15.65099 -15.39386 -14.91604 -14.86015 -14.53189 -14.36085 -14.07109 -13.84662 -13.43718 -13.40525 -13.09489 -13.05192 -12.98992 -12.83220 -12.60479 -12.53456 -12.41393 -12.31245 -12.24626 -11.95650 -11.60650 -11.46395 -11.18343 -11.09207 -11.04688 -10.53506 -10.33791 -10.07720 -9.92070 -9.52820 -9.26406 -9.14218 -8.77843 -7.45349 -7.07380 -6.98466 -4.59028 1.22541 2.21997 2.28397 2.43253 2.55280 2.72755 2.96888 3.01166 3.06924 3.16387 3.62332 3.81191 3.87888 4.08538 4.45558 4.48256 4.62239 4.69226 4.76623 4.81973 4.95576 5.01327 5.32728 5.44068 5.46520 5.53879 5.65018 5.68541 5.71121 5.83557 5.88909 6.02548 6.06547 6.14654 6.32056 6.37244 6.51565 6.59056 6.75026 7.09395 7.17451 7.26064 7.26935 7.33183 7.47174 7.54535 7.81455 8.05138 8.12248 8.18229 8.60425 8.92974 10.04452 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.003845 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.820770 B = 7280.630617 C = 8261.447941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 C -0.160 4.160 4 N -0.727 5.727 5 C 0.527 3.473 6 O -0.480 6.480 7 C -0.048 4.048 8 H 0.159 0.841 9 C 0.224 3.776 10 N -0.397 5.397 11 C 0.415 3.585 12 O -0.391 6.391 13 C -0.053 4.053 14 C -0.191 4.191 15 C -0.114 4.114 16 C -0.085 4.085 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.090 4.090 20 C 0.045 3.955 21 N -0.239 5.239 22 C -0.325 4.325 23 H 0.133 0.867 24 C 0.082 3.918 25 N -0.809 5.809 26 Si 0.871 3.129 27 H -0.247 1.247 28 H -0.277 1.277 29 H -0.252 1.252 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.400 0.600 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 15.849 3.478 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 C -0.217 4.217 4 N -0.381 5.381 5 C 0.309 3.691 6 O -0.350 6.350 7 C -0.074 4.074 8 H 0.176 0.824 9 C -0.095 4.095 10 N -0.074 5.074 11 C 0.288 3.712 12 O -0.261 6.261 13 C -0.166 4.166 14 C -0.218 4.218 15 C -0.118 4.118 16 C -0.103 4.103 17 C -0.169 4.169 18 C -0.159 4.159 19 C -0.110 4.110 20 C -0.069 4.069 21 N 0.100 4.900 22 C -0.453 4.453 23 H 0.150 0.850 24 C -0.134 4.134 25 N -0.437 5.437 26 Si 0.694 3.306 27 H -0.171 1.171 28 H -0.203 1.203 29 H -0.175 1.175 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.234 0.766 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.186 14.697 2.973 14.996 hybrid contribution 1.282 0.422 -0.084 1.352 sum 1.468 15.119 2.889 15.463 Atomic orbital electron populations 1.22203 0.95253 1.02963 1.01983 1.20975 0.94238 0.92799 0.88724 1.22075 1.01893 0.94874 1.02903 1.46067 1.68443 1.06445 1.17150 1.19507 0.78821 0.82443 0.88373 1.90890 1.45872 1.65015 1.33241 1.19312 0.96420 1.01045 0.90651 0.82363 1.27543 0.93793 0.94539 0.93610 1.81213 1.09155 1.07121 1.09897 1.18966 0.83600 0.85640 0.82981 1.90724 1.45115 1.65272 1.24938 1.19150 1.04865 0.87887 1.04719 1.20526 0.99900 1.00061 1.01306 1.17919 0.99759 0.95439 0.98705 1.20164 0.95333 0.97758 0.97093 1.20385 1.01204 0.94616 1.00736 1.20576 0.99475 0.98912 0.96945 1.20224 0.95301 0.96476 0.98982 1.18458 0.97005 0.97323 0.94082 1.40341 1.21044 1.08508 1.20153 1.19715 0.96472 1.20900 1.08248 0.84953 1.25577 1.00098 0.93554 0.94195 1.69679 1.38017 1.13438 1.22560 0.86869 0.82745 0.82333 0.78654 1.17115 1.20299 1.17547 0.91562 0.91842 0.92535 0.88985 0.91727 0.90883 0.92069 0.76566 0.84791 0.87119 0.87255 0.86926 0.86413 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.49 37.16 0.35 -1.20 16 2 C 0.14 1.27 3.19 -67.93 -0.22 1.05 16 3 C -0.16 -0.96 9.38 37.16 0.35 -0.62 16 4 N -0.73 -7.27 5.08 -53.81 -0.27 -7.54 16 5 C 0.53 7.68 6.95 -10.99 -0.08 7.60 16 6 O -0.48 -9.32 14.28 -17.92 -0.26 -9.58 16 7 C -0.05 -0.68 2.47 -95.71 -0.24 -0.92 16 8 H 0.16 1.52 7.08 -51.93 -0.37 1.15 16 9 C 0.22 3.32 14.61 -20.76 -0.30 3.02 16 10 N -0.40 -6.47 18.54 42.15 0.78 -5.69 16 11 C 0.41 8.38 5.86 -33.01 -0.19 8.19 16 12 O -0.39 -9.53 13.43 -18.03 -0.24 -9.77 16 13 C -0.05 -1.14 6.58 -84.19 -0.55 -1.70 16 14 C -0.19 -3.53 10.02 -38.93 -0.39 -3.92 16 15 C -0.11 -2.30 6.16 -106.90 -0.66 -2.96 16 16 C -0.08 -1.46 10.06 -39.49 -0.40 -1.85 16 17 C -0.15 -2.49 9.97 -39.96 -0.40 -2.89 16 18 C -0.14 -2.52 10.02 -39.49 -0.40 -2.91 16 19 C -0.09 -1.95 7.03 -39.41 -0.28 -2.22 16 20 C 0.05 1.04 5.17 -83.82 -0.43 0.61 16 21 N -0.24 -5.89 2.36 -57.49 -0.14 -6.02 16 22 C -0.32 -8.78 9.00 -15.03 -0.14 -8.92 16 23 H 0.13 3.92 7.25 -52.48 -0.38 3.54 16 24 C 0.08 2.14 4.89 -17.47 -0.09 2.05 16 25 N -0.81 -21.59 13.95 55.50 0.77 -20.81 16 26 Si 0.87 20.12 24.58 -169.99 -4.18 15.94 16 27 H -0.25 -5.35 5.89 56.52 0.33 -5.02 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.25 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.03 7.57 -51.93 -0.39 0.64 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.40 2.71 8.60 -40.82 -0.35 2.36 16 38 H 0.13 1.86 7.38 -52.49 -0.39 1.47 16 39 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 40 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.12 2.62 6.20 -52.49 -0.33 2.29 16 43 H 0.29 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -32.92 368.58 -7.24 -40.16 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.21 Total: 5.36 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -4.05 Total: -7.60 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 1.15 Total: -40.07 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.50 Total: -19.35 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.18 Total: 15.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.92 -7.24 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729888316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.300 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.56 seconds