Wall clock time and date at job start Wed Apr 1 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 N 1.46503 * 109.46634 * 120.00225 * 2 1 3 5 5 C 1.34773 * 120.00455 * 85.27864 * 4 2 1 6 6 O 1.21283 * 120.00133 * 359.71601 * 5 4 2 7 7 C 1.50697 * 120.00099 * 179.72388 * 5 4 2 8 8 H 1.08997 * 109.47103 * 311.22698 * 7 5 4 9 9 C 1.47201 * 109.47566 * 71.22716 * 7 5 4 10 10 N 5.09681 * 82.13871 * 122.02542 * 2 1 3 11 11 C 1.50705 * 109.47031 * 191.23047 * 7 5 4 12 12 O 1.21409 * 119.99676 * 328.03769 * 11 7 5 13 13 C 1.41634 * 119.99915 * 148.04475 * 11 7 5 14 14 C 1.36612 * 125.49321 * 6.58012 * 13 11 7 15 15 C 1.41501 * 107.71796 * 180.02562 * 14 13 11 16 16 C 1.40121 * 133.29727 * 180.02562 * 15 14 13 17 17 C 1.36534 * 119.82938 * 180.02562 * 16 15 14 18 18 C 1.38886 * 120.61174 * 359.97438 * 17 16 15 19 19 C 1.37832 * 120.65047 * 0.02562 * 18 17 16 20 20 C 1.39101 * 119.82385 * 359.97438 * 19 18 17 21 21 N 1.37796 * 133.09032 * 180.34401 * 20 19 18 22 22 C 1.36803 * 125.63325 * 359.96348 * 21 20 19 23 23 H 1.08003 * 119.99820 * 134.75554 * 22 21 20 24 24 C 1.39063 * 120.00228 * 314.76318 * 22 21 20 25 25 N 1.31318 * 120.00251 * 160.20971 * 24 22 21 26 26 Si 1.86807 * 119.99852 * 340.20638 * 24 22 21 27 27 H 1.48497 * 109.46767 * 95.73313 * 26 24 22 28 28 H 1.48505 * 109.46970 * 215.73205 * 26 24 22 29 29 H 1.48500 * 109.47077 * 335.73381 * 26 24 22 30 30 H 1.08999 * 109.47137 * 60.00212 * 1 2 3 31 31 H 1.09004 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47278 * 299.99815 * 1 2 3 33 33 H 1.08999 * 109.47008 * 239.99274 * 2 1 3 34 34 H 1.08995 * 109.46748 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46863 * 299.99957 * 3 2 1 36 36 H 1.08996 * 109.46814 * 59.99901 * 3 2 1 37 37 H 0.97008 * 119.99413 * 264.99053 * 4 2 1 38 38 H 1.07997 * 126.14546 * 0.02927 * 14 13 11 39 39 H 1.08005 * 120.08241 * 0.02562 * 16 15 14 40 40 H 1.08003 * 119.69340 * 180.02562 * 17 16 15 41 41 H 1.08000 * 119.67663 * 179.97438 * 18 17 16 42 42 H 1.07997 * 120.08581 * 179.97438 * 19 18 17 43 43 H 0.97003 * 120.00382 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1523 -2.0317 1.1926 6 8 1.8638 -2.6674 0.2008 7 6 2.6604 -2.7415 2.4210 8 1 3.5620 -2.2455 2.7804 9 6 1.6290 -2.7053 3.4706 10 7 0.8329 -2.6774 4.2805 11 6 2.9780 -4.1742 2.0780 12 8 2.3327 -4.7522 1.2275 13 6 4.0294 -4.8464 2.7480 14 6 4.7406 -4.3522 3.8045 15 6 5.6936 -5.3296 4.1770 16 6 6.6784 -5.3812 5.1724 17 6 7.4678 -6.4890 5.2901 18 6 7.3041 -7.5685 4.4316 19 6 6.3424 -7.5417 3.4445 20 6 5.5258 -6.4244 3.3044 21 7 4.4985 -6.1116 2.4409 22 6 4.0234 -6.9172 1.4425 23 1 2.9587 -7.0399 1.3083 24 6 4.9110 -7.5782 0.6005 25 7 4.5109 -8.6248 -0.0842 26 14 6.6727 -6.9770 0.4433 27 1 7.5442 -7.7526 1.3621 28 1 7.1368 -7.1642 -0.9549 29 1 6.7376 -5.5364 0.7978 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 2.2490 -0.1823 1.9895 38 1 4.6006 -3.3886 4.2717 39 1 6.8127 -4.5468 5.8449 40 1 8.2259 -6.5266 6.0584 41 1 7.9371 -8.4370 4.5379 42 1 6.2234 -8.3860 2.7817 43 1 5.1302 -9.0861 -0.6713 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729888316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:42 Heat of formation + Delta-G solvation = 5.674091 kcal Electronic energy + Delta-G solvation = -29033.420640 eV Core-core repulsion = 25044.065821 eV Total energy + Delta-G solvation = -3989.354819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.65768 -41.50387 -39.71495 -37.86667 -37.62451 -36.96427 -35.56162 -33.87187 -33.07188 -31.80346 -30.85127 -29.80756 -28.08370 -26.78739 -25.40790 -23.31207 -22.71724 -22.00443 -21.74218 -20.97844 -20.12570 -19.40545 -18.42537 -17.70426 -17.42032 -17.08147 -16.69787 -16.45278 -16.14431 -15.97166 -15.66196 -15.31300 -15.02789 -14.96158 -14.89364 -14.70537 -14.57976 -14.21003 -14.04797 -13.92174 -13.77337 -13.68725 -13.36888 -13.22359 -13.10321 -13.03866 -12.83516 -12.47126 -12.28709 -12.26136 -11.98922 -11.91413 -11.54390 -11.32549 -11.24982 -10.71856 -10.42589 -10.22730 -9.04186 -8.87368 -8.63039 -6.54728 -0.29569 0.81311 0.96317 1.04618 1.14399 1.16438 1.29515 1.29974 1.49030 1.91594 1.98190 2.15199 2.43032 2.60603 2.81197 3.12610 3.18102 3.48480 3.89295 3.95269 4.00872 4.14956 4.24307 4.32504 4.33517 4.42549 4.59181 4.69852 4.71548 4.77127 4.85874 4.95488 5.01806 5.04135 5.11138 5.27395 5.29761 5.35747 5.37003 5.46383 5.68457 5.78811 5.84025 6.05083 6.10049 6.13412 6.37844 6.41648 6.55108 6.83148 7.08801 7.15848 8.23479 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.003845 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.820770 B = 7280.630617 C = 8261.447941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.149 4.149 4 N -0.701 5.701 5 C 0.525 3.475 6 O -0.540 6.540 7 C -0.032 4.032 8 H 0.219 0.781 9 C 0.241 3.759 10 N -0.416 5.416 11 C 0.414 3.586 12 O -0.445 6.445 13 C -0.085 4.085 14 C -0.140 4.140 15 C -0.140 4.140 16 C -0.064 4.064 17 C -0.154 4.154 18 C -0.109 4.109 19 C -0.147 4.147 20 C 0.036 3.964 21 N -0.283 5.283 22 C -0.352 4.352 23 H 0.077 0.923 24 C 0.046 3.954 25 N -0.868 5.868 26 Si 0.926 3.074 27 H -0.226 1.226 28 H -0.274 1.274 29 H -0.266 1.266 30 H 0.083 0.917 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.421 0.579 38 H 0.196 0.804 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.141 0.859 42 H 0.093 0.907 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 20.475 7.773 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.207 4.207 4 N -0.355 5.355 5 C 0.307 3.693 6 O -0.414 6.414 7 C -0.058 4.058 8 H 0.235 0.765 9 C -0.078 4.078 10 N -0.093 5.093 11 C 0.290 3.710 12 O -0.318 6.318 13 C -0.196 4.196 14 C -0.166 4.166 15 C -0.144 4.144 16 C -0.082 4.082 17 C -0.173 4.173 18 C -0.129 4.129 19 C -0.167 4.167 20 C -0.078 4.078 21 N 0.052 4.948 22 C -0.480 4.480 23 H 0.095 0.905 24 C -0.164 4.164 25 N -0.500 5.500 26 Si 0.747 3.253 27 H -0.149 1.149 28 H -0.199 1.199 29 H -0.190 1.190 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.259 0.741 38 H 0.213 0.787 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.159 0.841 42 H 0.111 0.889 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.455 19.380 7.311 21.000 hybrid contribution 0.292 -0.799 -1.048 1.350 sum 3.747 18.582 6.263 19.963 Atomic orbital electron populations 1.22185 0.95332 1.00978 1.03636 1.21133 0.94213 0.94606 0.87360 1.22020 1.02231 0.92021 1.04413 1.45925 1.66438 1.04851 1.18298 1.19612 0.78418 0.83661 0.87598 1.90893 1.48685 1.66523 1.35337 1.19263 0.98658 0.97302 0.90574 0.76469 1.27421 0.93332 0.93968 0.93056 1.81247 1.09493 1.07568 1.10991 1.19759 0.82212 0.87813 0.81246 1.90730 1.46874 1.67130 1.27039 1.19856 1.05627 0.88262 1.05806 1.21283 0.96330 1.01193 0.97840 1.18456 1.01576 0.94813 0.99603 1.20731 0.92714 0.99178 0.95574 1.20928 1.01938 0.93405 1.00995 1.21112 0.97008 1.00278 0.94490 1.20313 0.98354 0.96374 1.01705 1.19065 0.95865 0.98714 0.94137 1.40312 1.23392 1.09833 1.21219 1.19043 0.94229 1.23974 1.10715 0.90535 1.26137 1.03249 0.93400 0.93588 1.69748 1.39473 1.15484 1.25245 0.86095 0.79455 0.80886 0.78904 1.14889 1.19940 1.19002 0.89864 0.95573 0.90977 0.91519 0.91098 0.89772 0.90171 0.74067 0.78680 0.82238 0.82530 0.84098 0.88905 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 71.98 0.68 -2.25 16 2 C 0.13 2.24 3.19 44.99 0.14 2.39 16 3 C -0.15 -1.30 9.38 71.98 0.68 -0.62 16 4 N -0.70 -12.49 5.08 -442.53 -2.25 -14.73 16 5 C 0.53 15.04 6.95 87.66 0.61 15.65 16 6 O -0.54 -22.22 14.28 19.41 0.28 -21.95 16 7 C -0.03 -0.86 2.47 -14.09 -0.03 -0.89 16 8 H 0.22 2.93 7.08 -2.39 -0.02 2.92 16 9 C 0.24 6.58 14.61 89.44 1.31 7.89 16 10 N -0.42 -12.70 18.54 20.01 0.37 -12.33 16 11 C 0.41 17.11 5.86 26.53 0.16 17.27 16 12 O -0.44 -23.65 13.43 19.02 0.26 -23.39 16 13 C -0.09 -3.65 6.58 38.57 0.25 -3.40 16 14 C -0.14 -4.55 10.02 22.69 0.23 -4.33 16 15 C -0.14 -5.09 6.16 -21.34 -0.13 -5.22 16 16 C -0.06 -1.75 10.06 22.33 0.22 -1.53 16 17 C -0.15 -4.10 9.97 22.03 0.22 -3.88 16 18 C -0.11 -3.55 10.02 22.33 0.22 -3.33 16 19 C -0.15 -6.32 7.03 22.38 0.16 -6.16 16 20 C 0.04 1.65 5.17 39.09 0.20 1.85 16 21 N -0.28 -14.60 2.36 -335.80 -0.79 -15.39 16 22 C -0.35 -21.03 9.00 84.12 0.76 -20.28 16 23 H 0.08 5.22 7.25 -2.91 -0.02 5.20 16 24 C 0.05 2.63 4.89 84.97 0.42 3.05 16 25 N -0.87 -51.39 13.95 21.68 0.30 -51.09 16 26 Si 0.93 44.10 24.58 68.60 1.69 45.79 16 27 H -0.23 -9.76 5.89 99.48 0.59 -9.18 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.52 7.57 -2.39 -0.02 1.51 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.42 3.93 8.60 -92.70 -0.80 3.13 16 38 H 0.20 3.81 7.38 -2.91 -0.02 3.79 16 39 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 42 H 0.09 4.36 6.20 -2.91 -0.02 4.34 16 43 H 0.29 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -86.64 368.58 6.09 -80.55 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.15 Total: 16.34 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.09 Total: -3.79 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -2.36 Total: -93.54 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: 0.53 Total: -45.34 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.69 Total: 45.79 kcal Total: -86.64 6.09 -80.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729888316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.220 kcal (2) G-P(sol) polarization free energy of solvation -86.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds