Wall clock time and date at job start Tue Mar 31 2020 23:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 C 1.53000 * 109.46519 * 240.00374 * 2 1 3 5 5 C 1.50697 * 109.47722 * 60.00386 * 4 2 1 6 6 H 1.08003 * 119.99760 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00227 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00067 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00033 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47064 * 90.00587 * 9 7 5 11 11 H 1.48506 * 109.47117 * 210.00379 * 9 7 5 12 12 H 1.48504 * 109.47356 * 330.00530 * 9 7 5 13 13 C 1.52996 * 109.47007 * 120.00466 * 2 1 3 14 14 N 1.46503 * 109.47092 * 299.99719 * 13 2 1 15 15 C 1.34775 * 120.00031 * 180.02562 * 14 13 2 16 16 O 1.21622 * 120.00009 * 359.97438 * 15 14 13 17 17 C 1.47315 * 119.99980 * 180.02562 * 15 14 13 18 18 C 1.39804 * 120.18176 * 5.92591 * 17 15 14 19 19 C 1.37637 * 119.94886 * 179.74562 * 18 17 15 20 20 N 1.48025 * 119.83672 * 180.22497 * 19 18 17 21 21 O 1.21799 * 119.99758 * 0.26381 * 20 19 18 22 22 O 1.21796 * 119.99948 * 180.25622 * 20 19 18 23 23 C 1.38906 * 120.32654 * 0.48778 * 19 18 17 24 24 F 1.35092 * 119.81716 * 179.76340 * 23 19 18 25 25 C 1.38243 * 120.36470 * 359.48574 * 23 19 18 26 26 C 1.38827 * 120.04616 * 0.27819 * 25 23 19 27 27 N 1.38878 * 120.16439 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.46809 * 300.00415 * 1 2 3 29 29 H 1.09007 * 109.47155 * 59.99339 * 1 2 3 30 30 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46980 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47555 * 300.00159 * 3 2 1 33 33 H 1.09002 * 109.46893 * 60.00338 * 3 2 1 34 34 H 1.09001 * 109.47024 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47129 * 299.99671 * 4 2 1 36 36 H 0.96996 * 120.00214 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47206 * 179.97438 * 13 2 1 38 38 H 1.08997 * 109.47088 * 59.99572 * 13 2 1 39 39 H 0.96997 * 120.00066 * 359.97438 * 14 13 2 40 40 H 1.08001 * 120.02141 * 359.97438 * 18 17 15 41 41 H 1.08009 * 119.97923 * 180.25173 * 25 23 19 42 42 H 0.97000 * 119.99699 * 354.47903 * 27 26 25 43 43 H 0.96999 * 119.99757 * 174.48201 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4798 6 1 0.9165 0.8672 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 1.4323 0.1382 -4.8058 9 14 2.9440 -2.0009 -3.9035 10 1 2.0853 -3.2117 -3.9485 11 1 3.7355 -1.9087 -5.1566 12 1 3.8648 -2.0900 -2.7418 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8777 -0.4910 3.6695 16 8 2.5769 -1.4799 3.7810 17 6 1.3862 0.2031 4.8723 18 6 0.4826 1.2631 4.7523 19 6 0.0225 1.9048 5.8796 20 7 -0.9380 3.0236 5.7499 21 8 -1.3229 3.3710 4.6478 22 8 -1.3435 3.5966 6.7452 23 6 0.4592 1.5113 7.1381 24 9 0.0045 2.1514 8.2375 25 6 1.3521 0.4644 7.2723 26 6 1.8224 -0.1967 6.1458 27 7 2.7198 -1.2484 6.2777 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1299 -0.7216 -1.2492 35 1 1.6766 -1.7489 -1.2493 36 1 1.6660 -0.1935 -5.6868 37 1 3.1300 -0.7218 1.2490 38 1 1.6766 -1.7489 1.2491 39 1 0.9944 0.7581 2.3565 40 1 0.1431 1.5758 3.7758 41 1 1.6844 0.1610 8.2542 42 1 3.0813 -1.4709 7.1499 43 1 2.9852 -1.7602 5.4976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813703456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:27 Heat of formation + Delta-G solvation = -64.986362 kcal Electronic energy + Delta-G solvation = -29421.239279 eV Core-core repulsion = 24998.051168 eV Total energy + Delta-G solvation = -4423.188111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.78659 -42.26381 -40.99555 -39.02628 -37.41396 -36.65832 -35.62618 -33.92263 -32.36243 -31.60232 -30.68564 -27.92724 -26.65581 -26.59092 -26.14393 -24.58594 -23.16754 -22.33409 -21.07234 -19.87011 -19.05236 -18.64142 -18.35991 -17.83480 -17.77656 -17.25712 -16.80791 -16.40765 -16.32014 -15.75095 -15.59094 -15.19241 -15.07655 -14.24226 -14.15882 -13.87616 -13.72532 -13.53249 -13.45481 -12.89077 -12.77731 -12.48024 -12.34008 -11.71533 -11.69354 -11.35710 -11.35016 -11.25158 -11.22750 -11.07965 -10.70275 -10.60829 -10.41107 -10.08007 -9.88034 -9.82082 -9.61406 -9.21990 -9.07281 -8.69962 -8.58897 -6.09007 -4.06983 -0.40291 -0.04594 1.01530 1.13740 2.13367 2.81685 2.89926 3.00619 3.23891 3.26364 3.34975 3.37011 3.65097 3.96195 4.18019 4.40154 4.54855 4.66170 4.84892 4.91761 5.01198 5.22033 5.23119 5.38169 5.49342 5.51335 5.93181 5.96726 6.01477 6.14806 6.17911 6.18884 6.47958 6.50620 6.55257 6.77761 6.93950 6.97156 7.05075 7.10148 7.26022 7.26737 7.47908 7.72094 7.89517 8.47177 8.95059 9.53053 11.03680 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.002662 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.356141 B =10514.239636 C =11922.589251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.131 4.131 4 C -0.001 4.001 5 C -0.513 4.513 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.124 3.876 14 N -0.706 5.706 15 C 0.572 3.428 16 O -0.550 6.550 17 C -0.230 4.230 18 C 0.058 3.942 19 C -0.156 4.156 20 N 0.042 4.958 21 O -0.163 6.163 22 O -0.163 6.163 23 C 0.242 3.758 24 F -0.098 7.098 25 C -0.251 4.251 26 C 0.348 3.652 27 N -0.820 5.820 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.404 0.596 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 -0.752 25.921 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.188 4.188 4 C -0.038 4.038 5 C -0.551 4.551 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.001 3.999 14 N -0.356 5.356 15 C 0.360 3.640 16 O -0.431 6.431 17 C -0.240 4.240 18 C 0.037 3.963 19 C -0.244 4.244 20 N 0.559 4.441 21 O -0.376 6.376 22 O -0.376 6.376 23 C 0.219 3.781 24 F -0.076 7.076 25 C -0.276 4.276 26 C 0.227 3.773 27 N -0.363 5.363 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.240 0.760 40 H 0.182 0.818 41 H 0.180 0.820 42 H 0.233 0.767 43 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.282 -2.034 25.765 25.945 hybrid contribution 0.184 -0.292 -0.009 0.346 sum 2.466 -2.326 25.756 25.978 Atomic orbital electron populations 1.21808 0.94567 1.01396 1.01074 1.20728 0.96004 0.96009 0.93734 1.21799 1.00503 0.95449 1.01048 1.19582 0.96269 0.95470 0.92521 1.21062 1.32007 1.13462 0.88555 0.90294 1.24998 0.95671 0.96723 0.95993 1.69896 1.45795 1.40466 0.97921 0.86864 0.81296 0.83938 0.77662 1.20379 1.21484 1.19065 1.21797 0.99221 0.96201 0.82650 1.46080 1.52232 1.31705 1.05576 1.17587 0.80108 0.83490 0.82857 1.90405 1.40178 1.27039 1.85443 1.19343 1.08137 1.03260 0.93213 1.20841 0.88511 0.88670 0.98265 1.20655 1.07992 1.00774 0.94986 1.43170 0.99725 1.00465 1.00723 1.94572 1.60642 1.68869 1.13530 1.94590 1.59638 1.55023 1.28388 1.17034 0.90846 0.89453 0.80761 1.91681 1.86183 1.79262 1.50471 1.20499 1.06007 1.01138 0.99944 1.17584 0.84063 0.84533 0.91079 1.43818 1.44347 1.32102 1.16045 0.95014 0.90544 0.93272 0.93299 0.90544 0.95040 0.96355 0.96790 0.92727 0.91216 0.91200 0.76043 0.81805 0.81955 0.76729 0.72573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 2 C -0.06 -1.07 0.54 -154.51 -0.08 -1.16 16 3 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 4 C 0.00 -0.01 3.11 -27.88 -0.09 -0.10 16 5 C -0.51 -13.22 8.20 -34.44 -0.28 -13.50 16 6 H 0.08 2.16 5.92 -52.48 -0.31 1.85 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 9 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.12 1.78 4.56 -4.04 -0.02 1.76 16 14 N -0.71 -8.23 4.91 -61.42 -0.30 -8.53 16 15 C 0.57 6.53 7.74 -12.57 -0.10 6.44 16 16 O -0.55 -7.28 13.64 5.26 0.07 -7.20 16 17 C -0.23 -2.11 5.89 -104.80 -0.62 -2.72 16 18 C 0.06 0.52 9.02 -39.22 -0.35 0.17 16 19 C -0.16 -1.60 6.85 -79.91 -0.55 -2.15 16 20 N 0.04 0.54 4.45 33.98 0.15 0.70 16 21 O -0.16 -2.21 18.43 -29.46 -0.54 -2.75 16 22 O -0.16 -2.26 17.40 -29.46 -0.51 -2.77 16 23 C 0.24 2.12 7.25 -39.33 -0.29 1.84 16 24 F -0.10 -0.95 15.45 2.25 0.03 -0.92 16 25 C -0.25 -1.59 9.85 -39.36 -0.39 -1.97 16 26 C 0.35 2.59 6.76 -83.63 -0.57 2.02 16 27 N -0.82 -4.95 8.93 32.54 0.29 -4.66 16 28 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 29 H 0.08 1.41 6.62 -51.93 -0.34 1.07 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.41 6.62 -51.93 -0.34 1.07 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 34 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 35 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.40 4.08 4.22 -40.82 -0.17 3.90 16 40 H 0.16 1.31 5.97 -52.49 -0.31 1.00 16 41 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.40 1.11 8.84 -40.82 -0.36 0.75 16 43 H 0.43 3.49 5.34 -40.95 -0.22 3.28 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -31.06 357.68 -6.96 -38.02 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.82 Total: 3.67 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.82 Total: -11.22 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.91 Total: -38.35 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.98 Total: -12.73 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.03 Total: -0.92 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.06 -6.96 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813703456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.964 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds