Wall clock time and date at job start Tue Mar 31 2020 23:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47180 * 2 1 4 4 C 1.53000 * 109.46519 * 240.00374 * 2 1 3 5 5 C 1.50697 * 109.47722 * 60.00386 * 4 2 1 6 6 H 1.08003 * 119.99760 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00227 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00067 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00033 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47064 * 90.00587 * 9 7 5 11 11 H 1.48506 * 109.47117 * 210.00379 * 9 7 5 12 12 H 1.48504 * 109.47356 * 330.00530 * 9 7 5 13 13 C 1.52996 * 109.47007 * 120.00466 * 2 1 3 14 14 N 1.46503 * 109.47092 * 299.99719 * 13 2 1 15 15 C 1.34775 * 120.00031 * 180.02562 * 14 13 2 16 16 O 1.21622 * 120.00009 * 359.97438 * 15 14 13 17 17 C 1.47315 * 119.99980 * 180.02562 * 15 14 13 18 18 C 1.39804 * 120.18176 * 5.92591 * 17 15 14 19 19 C 1.37637 * 119.94886 * 179.74562 * 18 17 15 20 20 N 1.48025 * 119.83672 * 180.22497 * 19 18 17 21 21 O 1.21799 * 119.99758 * 0.26381 * 20 19 18 22 22 O 1.21796 * 119.99948 * 180.25622 * 20 19 18 23 23 C 1.38906 * 120.32654 * 0.48778 * 19 18 17 24 24 F 1.35092 * 119.81716 * 179.76340 * 23 19 18 25 25 C 1.38243 * 120.36470 * 359.48574 * 23 19 18 26 26 C 1.38827 * 120.04616 * 0.27819 * 25 23 19 27 27 N 1.38878 * 120.16439 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.46809 * 300.00415 * 1 2 3 29 29 H 1.09007 * 109.47155 * 59.99339 * 1 2 3 30 30 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46980 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47555 * 300.00159 * 3 2 1 33 33 H 1.09002 * 109.46893 * 60.00338 * 3 2 1 34 34 H 1.09001 * 109.47024 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47129 * 299.99671 * 4 2 1 36 36 H 0.96996 * 120.00214 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47206 * 179.97438 * 13 2 1 38 38 H 1.08997 * 109.47088 * 59.99572 * 13 2 1 39 39 H 0.96997 * 120.00066 * 359.97438 * 14 13 2 40 40 H 1.08001 * 120.02141 * 359.97438 * 18 17 15 41 41 H 1.08009 * 119.97923 * 180.25173 * 25 23 19 42 42 H 0.97000 * 119.99699 * 354.47903 * 27 26 25 43 43 H 0.96999 * 119.99757 * 174.48201 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4798 6 1 0.9165 0.8672 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 1.4323 0.1382 -4.8058 9 14 2.9440 -2.0009 -3.9035 10 1 2.0853 -3.2117 -3.9485 11 1 3.7355 -1.9087 -5.1566 12 1 3.8648 -2.0900 -2.7418 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8777 -0.4910 3.6695 16 8 2.5769 -1.4799 3.7810 17 6 1.3862 0.2031 4.8723 18 6 0.4826 1.2631 4.7523 19 6 0.0225 1.9048 5.8796 20 7 -0.9380 3.0236 5.7499 21 8 -1.3229 3.3710 4.6478 22 8 -1.3435 3.5966 6.7452 23 6 0.4592 1.5113 7.1381 24 9 0.0045 2.1514 8.2375 25 6 1.3521 0.4644 7.2723 26 6 1.8224 -0.1967 6.1458 27 7 2.7198 -1.2484 6.2777 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1299 -0.7216 -1.2492 35 1 1.6766 -1.7489 -1.2493 36 1 1.6660 -0.1935 -5.6868 37 1 3.1300 -0.7218 1.2490 38 1 1.6766 -1.7489 1.2491 39 1 0.9944 0.7581 2.3565 40 1 0.1431 1.5758 3.7758 41 1 1.6844 0.1610 8.2542 42 1 3.0813 -1.4709 7.1499 43 1 2.9852 -1.7602 5.4976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813703456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:25 Heat of formation + Delta-G solvation = -84.921961 kcal Electronic energy + Delta-G solvation = -29422.103752 eV Core-core repulsion = 24998.051168 eV Total energy + Delta-G solvation = -4424.052583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.46494 -43.15581 -41.80649 -39.92393 -38.62197 -37.60952 -36.36045 -35.14189 -34.09547 -32.41876 -31.41315 -29.70028 -27.98721 -27.72613 -26.96967 -25.42549 -24.43188 -23.44918 -22.03098 -20.77741 -19.93039 -19.63341 -19.26307 -18.88549 -18.65934 -18.54321 -18.10198 -17.24913 -17.03158 -16.54238 -16.46998 -16.23870 -15.79528 -15.76827 -15.32620 -15.29924 -14.71902 -14.42983 -14.30827 -14.18451 -14.13969 -13.77684 -13.48322 -12.92613 -12.83112 -12.68410 -12.61629 -12.36849 -12.29016 -12.28536 -12.26552 -12.15647 -11.76702 -11.51590 -11.38766 -11.06983 -10.89914 -10.69054 -10.55520 -10.17667 -9.31810 -8.20484 -6.21099 -1.22287 -0.71117 0.20735 0.32885 1.37245 1.37740 1.40218 1.49777 1.96636 2.24558 2.25830 2.40576 2.62575 3.03177 3.15213 3.22727 3.53149 3.86692 3.90240 4.02675 4.06246 4.15100 4.24931 4.28033 4.41734 4.62752 4.71578 4.78194 4.88333 4.94634 5.00486 5.10765 5.23401 5.29269 5.32658 5.41083 5.43579 5.57722 5.69761 5.78225 5.99773 6.31747 6.40060 6.47770 6.56420 6.86962 7.03181 7.41781 8.95361 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.002662 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.356141 B =10514.239636 C =11922.589251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.049 0.951 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.936 3.064 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.246 1.246 13 C 0.138 3.862 14 N -0.704 5.704 15 C 0.574 3.426 16 O -0.567 6.567 17 C -0.236 4.236 18 C 0.067 3.933 19 C -0.170 4.170 20 N 0.045 4.955 21 O -0.183 6.183 22 O -0.194 6.194 23 C 0.234 3.766 24 F -0.105 7.105 25 C -0.225 4.225 26 C 0.355 3.645 27 N -0.805 5.805 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.410 0.590 40 H 0.172 0.828 41 H 0.200 0.800 42 H 0.421 0.579 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -2.537 28.959 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.184 4.184 4 C -0.040 4.040 5 C -0.541 4.541 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.170 1.170 13 C 0.015 3.985 14 N -0.354 5.354 15 C 0.364 3.636 16 O -0.449 6.449 17 C -0.246 4.246 18 C 0.046 3.954 19 C -0.259 4.259 20 N 0.555 4.445 21 O -0.394 6.394 22 O -0.402 6.402 23 C 0.211 3.789 24 F -0.083 7.083 25 C -0.248 4.248 26 C 0.231 3.769 27 N -0.347 5.347 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.249 0.751 40 H 0.189 0.811 41 H 0.217 0.783 42 H 0.254 0.746 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.757 -3.797 28.874 29.364 hybrid contribution -0.225 0.207 -0.886 0.937 sum 3.532 -3.589 27.988 28.437 Atomic orbital electron populations 1.21745 0.94128 1.01432 1.01196 1.20578 0.96323 0.96064 0.93075 1.21735 1.00475 0.95066 1.01167 1.19555 0.96117 0.95527 0.92812 1.21400 1.30174 1.12258 0.90248 0.93237 1.25877 0.97529 1.00039 0.95874 1.70054 1.48276 1.42759 0.98479 0.85865 0.79817 0.80194 0.77978 1.19747 1.21857 1.16993 1.21410 0.98952 0.95801 0.82383 1.45902 1.52565 1.31928 1.05038 1.17790 0.79589 0.83207 0.83056 1.90415 1.40927 1.27802 1.85776 1.19117 1.08906 1.03562 0.92999 1.20854 0.88025 0.88235 0.98281 1.20748 1.08376 1.00523 0.96220 1.43499 0.99855 1.00869 1.00250 1.94546 1.61492 1.69689 1.13712 1.94573 1.60871 1.56272 1.28467 1.17224 0.91526 0.90155 0.80013 1.91667 1.86420 1.79581 1.50665 1.20744 1.03901 0.99094 1.01107 1.17651 0.83873 0.84613 0.90732 1.43828 1.43051 1.30841 1.16937 0.91524 0.93809 0.93255 0.93279 0.93799 0.91565 0.96341 0.96517 0.92944 0.91419 0.91398 0.75142 0.81117 0.78318 0.74591 0.73228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.05 71.98 0.58 -3.40 16 2 C -0.06 -1.93 0.54 -52.18 -0.03 -1.96 16 3 C -0.13 -3.95 8.05 71.98 0.58 -3.38 16 4 C 0.00 -0.09 3.11 29.85 0.09 0.00 16 5 C -0.50 -26.47 8.20 25.60 0.21 -26.26 16 6 H 0.05 2.85 5.92 -2.91 -0.02 2.83 16 7 C 0.00 0.16 5.47 84.65 0.46 0.62 16 8 N -0.95 -58.29 13.96 21.45 0.30 -58.00 16 9 Si 0.94 42.95 27.47 68.60 1.88 44.83 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.25 -10.41 6.54 99.48 0.65 -9.75 16 13 C 0.14 3.63 4.56 86.38 0.39 4.03 16 14 N -0.70 -14.38 4.91 -466.48 -2.29 -16.67 16 15 C 0.57 11.37 7.74 86.63 0.67 12.04 16 16 O -0.57 -13.27 13.64 -4.10 -0.06 -13.32 16 17 C -0.24 -3.58 5.89 -19.98 -0.12 -3.69 16 18 C 0.07 1.05 9.02 22.51 0.20 1.25 16 19 C -0.17 -3.20 6.85 36.39 0.25 -2.95 16 20 N 0.05 1.15 4.45 -46.41 -0.21 0.94 16 21 O -0.18 -4.97 18.43 18.89 0.35 -4.62 16 22 O -0.19 -5.44 17.40 18.89 0.33 -5.11 16 23 C 0.23 3.52 7.25 22.43 0.16 3.68 16 24 F -0.11 -1.87 15.45 44.97 0.69 -1.17 16 25 C -0.22 -1.91 9.85 22.41 0.22 -1.69 16 26 C 0.35 3.87 6.76 38.70 0.26 4.13 16 27 N -0.80 -6.37 8.93 -50.97 -0.46 -6.83 16 28 H 0.07 1.58 6.86 -2.39 -0.02 1.56 16 29 H 0.04 1.64 6.62 -2.38 -0.02 1.63 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.65 6.62 -2.39 -0.02 1.63 16 33 H 0.07 1.57 6.86 -2.39 -0.02 1.55 16 34 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 35 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.41 7.07 4.22 -92.71 -0.39 6.67 16 40 H 0.17 2.36 5.97 -2.91 -0.02 2.34 16 41 H 0.20 0.22 8.06 -2.91 -0.02 0.19 16 42 H 0.42 0.35 8.84 -92.71 -0.82 -0.47 16 43 H 0.42 5.35 5.34 -94.85 -0.51 4.85 16 Total: -1.00 -70.08 357.68 3.83 -66.25 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.66 Total: 11.27 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.94 Total: -17.58 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.65 Total: -80.55 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.62 Total: -23.06 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.69 Total: -1.17 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.83 kcal Total: -70.08 3.83 -66.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813703456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.668 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds