Wall clock time and date at job start Wed Apr 1 2020 00:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.08997 * 109.47408 * 60.00133 * 16 14 13 18 18 C 1.52996 * 109.47443 * 299.99838 * 16 14 13 19 19 O 1.42904 * 109.47161 * 305.00012 * 18 16 14 20 20 N 1.46506 * 109.47414 * 179.97438 * 16 14 13 21 21 C 1.34776 * 120.00154 * 205.00293 * 20 16 14 22 22 O 1.21519 * 119.99752 * 359.97438 * 21 20 16 23 23 C 1.48155 * 119.99671 * 180.02562 * 21 20 16 24 24 C 1.39235 * 119.70522 * 179.72930 * 23 21 20 25 25 C 1.38663 * 119.11975 * 179.75312 * 24 23 21 26 26 C 1.38503 * 118.52353 * 0.50076 * 25 24 23 27 27 C 1.38893 * 119.32819 * 359.73826 * 26 25 24 28 28 F 1.35099 * 119.58230 * 179.97438 * 27 26 25 29 29 N 1.31705 * 120.83852 * 0.02562 * 27 26 25 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 37 37 H 1.08997 * 109.47225 * 64.99666 * 18 16 14 38 38 H 1.08997 * 109.47846 * 184.99751 * 18 16 14 39 39 H 0.96704 * 114.00010 * 179.97438 * 19 18 16 40 40 H 0.97002 * 119.99323 * 24.99847 * 20 16 14 41 41 H 1.08004 * 120.44113 * 359.97388 * 24 23 21 42 42 H 1.07999 * 120.73600 * 180.21931 * 25 24 23 43 43 H 1.07999 * 120.33402 * 179.75376 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.0679 2.6147 -3.4685 18 6 1.0070 4.4834 -2.9522 19 8 1.0529 5.3721 -1.8340 20 7 -1.3224 3.8708 -2.5267 21 6 -2.0801 4.0550 -3.6260 22 8 -1.6357 3.7801 -4.7231 23 6 -3.4542 4.5936 -3.4969 24 6 -4.2295 4.7867 -4.6371 25 6 -5.5158 5.2866 -4.5018 26 6 -5.9787 5.5861 -3.2312 27 6 -5.1495 5.3734 -2.1374 28 9 -5.5956 5.6642 -0.8958 29 7 -3.9335 4.8929 -2.2954 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8293 -0.0605 2.9501 36 1 2.2718 2.1232 -1.9978 37 1 2.0021 4.0779 -3.1350 38 1 0.6684 5.0267 -3.8343 39 1 1.6502 6.1233 -1.9529 40 1 -1.6770 4.0904 -1.6509 41 1 -3.8356 4.5470 -5.6138 42 1 -6.1411 5.4433 -5.3683 43 1 -6.9744 5.9806 -3.0924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845945712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:25 Heat of formation + Delta-G solvation = -151.214289 kcal Electronic energy + Delta-G solvation = -29568.579841 eV Core-core repulsion = 25141.652607 eV Total energy + Delta-G solvation = -4426.927234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.11234 -41.90651 -41.02600 -39.83383 -37.90874 -36.99199 -35.51662 -34.35750 -33.92414 -32.94641 -32.26563 -30.55152 -28.76982 -26.23662 -25.39028 -24.64809 -24.32705 -22.38531 -21.60246 -21.10169 -20.12097 -18.90362 -18.76538 -18.42449 -17.67760 -17.40338 -17.28380 -17.19031 -16.88537 -16.81543 -16.39086 -16.17741 -15.85705 -15.48839 -15.02870 -14.80686 -14.64805 -14.56379 -14.39302 -14.21443 -13.97038 -13.57106 -13.32586 -13.28228 -13.18008 -12.88184 -12.82109 -12.68573 -12.17147 -12.08069 -11.81282 -11.59561 -11.19148 -11.17384 -11.05748 -10.86138 -10.69338 -10.53198 -10.33376 -10.12699 -9.65605 -8.14908 -6.31924 -0.61396 -0.03788 1.45213 1.45773 1.46291 1.56364 1.68363 1.78189 2.29400 2.38563 2.54605 2.61833 3.14866 3.20288 3.23860 3.60934 3.76733 3.81849 3.93632 3.97236 4.22715 4.31058 4.40730 4.47651 4.51115 4.54567 4.62324 4.74216 4.85677 4.94773 5.04761 5.10655 5.24674 5.42180 5.45254 5.54863 5.61311 5.78343 5.91422 6.11672 6.16785 6.42369 6.75354 6.82880 6.84204 6.96154 7.33318 7.51717 8.90631 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.002625 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.913028 B =10662.913243 C =11137.958299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.282 3.718 4 H -0.003 1.003 5 C -0.544 4.544 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.695 5.695 14 C 0.509 3.491 15 O -0.577 6.577 16 C 0.127 3.873 17 H 0.139 0.861 18 C 0.076 3.924 19 O -0.586 6.586 20 N -0.684 5.684 21 C 0.572 3.428 22 O -0.550 6.550 23 C 0.089 3.911 24 C -0.113 4.113 25 C -0.034 4.034 26 C -0.149 4.149 27 C 0.280 3.720 28 F -0.121 7.121 29 N -0.525 5.525 30 H 0.024 0.976 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.398 0.602 40 H 0.415 0.585 41 H 0.172 0.828 42 H 0.206 0.794 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 11.598 -18.412 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.014 0.986 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.182 1.182 13 N -0.344 5.344 14 C 0.294 3.706 15 O -0.457 6.457 16 C 0.018 3.982 17 H 0.156 0.844 18 C -0.003 4.003 19 O -0.394 6.394 20 N -0.335 5.335 21 C 0.358 3.642 22 O -0.428 6.428 23 C -0.048 4.048 24 C -0.135 4.135 25 C -0.059 4.059 26 C -0.170 4.170 27 C 0.124 3.876 28 F -0.100 7.100 29 N -0.243 5.243 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.253 0.747 41 H 0.190 0.810 42 H 0.223 0.777 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.364 10.709 -17.314 25.505 hybrid contribution 0.980 0.429 0.558 1.207 sum -14.384 11.139 -16.756 24.733 Atomic orbital electron populations 1.21673 0.97226 0.99079 1.00044 1.21800 0.93492 0.99269 1.01486 1.18361 0.93759 0.88948 0.81082 0.98553 1.21551 0.91224 1.38725 1.06701 0.90814 1.25775 1.03283 0.94446 0.95074 1.70056 1.37065 1.38469 1.09857 0.85374 0.79169 0.77299 0.78653 1.20572 1.21134 1.18246 1.46082 1.14848 1.55671 1.17751 1.20553 0.82438 0.78352 0.89258 1.90667 1.52486 1.60865 1.41711 1.21140 0.83245 0.96961 0.96853 0.84400 1.22510 0.98341 0.90415 0.89078 1.86562 1.70033 1.41291 1.41558 1.45607 1.13743 1.63156 1.11001 1.18090 0.84441 0.77789 0.83874 1.90758 1.73208 1.52822 1.26044 1.20684 0.94705 1.00699 0.88753 1.22485 0.94767 0.96538 0.99662 1.22120 0.93944 0.91520 0.98349 1.22531 1.02574 1.00731 0.91133 1.18532 0.89665 0.97880 0.81493 1.91637 1.87539 1.90445 1.40402 1.66626 1.15762 1.13334 1.28533 0.95680 0.93595 0.94087 0.90928 0.93749 0.92672 0.76116 0.89691 0.90886 0.75146 0.74709 0.81019 0.77703 0.79110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.08 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.47 2.24 44.24 0.10 14.56 16 4 H 0.00 -0.21 7.58 -2.38 -0.02 -0.23 16 5 C -0.54 -28.50 8.73 25.60 0.22 -28.28 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.70 11.29 21.45 0.24 -52.45 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 13 N -0.69 -28.42 4.93 -446.09 -2.20 -30.61 16 14 C 0.51 20.48 5.31 87.66 0.47 20.94 16 15 O -0.58 -28.13 12.98 -3.03 -0.04 -28.17 16 16 C 0.13 3.91 2.78 44.24 0.12 4.03 16 17 H 0.14 3.80 7.58 -2.39 -0.02 3.78 16 18 C 0.08 1.89 6.72 71.98 0.48 2.37 16 19 O -0.59 -16.74 13.09 -148.98 -1.95 -18.69 16 20 N -0.68 -21.93 4.89 -448.68 -2.19 -24.13 16 21 C 0.57 16.47 7.78 86.88 0.68 17.15 16 22 O -0.55 -16.32 15.98 -3.77 -0.06 -16.38 16 23 C 0.09 2.15 6.75 41.88 0.28 2.44 16 24 C -0.11 -1.71 9.63 22.61 0.22 -1.49 16 25 C -0.03 -0.26 10.16 22.43 0.23 -0.04 16 26 C -0.15 -1.61 10.09 22.49 0.23 -1.38 16 27 C 0.28 6.01 8.41 84.87 0.71 6.72 16 28 F -0.12 -2.88 17.29 44.97 0.78 -2.11 16 29 N -0.52 -14.27 9.56 -185.98 -1.78 -16.05 16 30 H 0.02 1.25 7.85 -2.39 -0.02 1.23 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.83 5.65 -2.38 -0.01 1.82 16 33 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 36 H 0.40 13.73 8.05 -92.71 -0.75 12.98 16 37 H 0.09 1.74 7.71 -2.39 -0.02 1.73 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.40 7.32 9.12 -74.05 -0.68 6.64 16 40 H 0.42 15.15 7.12 -92.71 -0.66 14.49 16 41 H 0.17 2.08 7.64 -2.91 -0.02 2.06 16 42 H 0.21 -0.44 8.06 -2.91 -0.02 -0.46 16 43 H 0.19 0.60 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -77.43 369.52 -1.19 -78.62 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.98 Total: 38.68 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: 4.97 Total: 27.30 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -5.93 Total: -123.24 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -2.05 Total: -63.24 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -77.43 -1.19 -78.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845945712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.597 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds