Wall clock time and date at job start Tue Mar 31 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 C 1.50707 * 109.47248 * 119.99379 * 2 1 3 5 5 O 1.21276 * 120.00234 * 232.93967 * 4 2 1 6 6 N 1.34778 * 119.99364 * 53.22098 * 4 2 1 7 7 C 1.47421 * 125.65364 * 4.46566 * 6 4 2 8 8 C 1.55126 * 104.72418 * 155.81852 * 7 6 4 9 9 C 1.55155 * 101.48513 * 37.29454 * 8 7 6 10 10 O 1.42903 * 110.87435 * 82.76821 * 9 8 7 11 11 C 1.50701 * 110.71912 * 205.97233 * 9 8 7 12 12 H 1.07993 * 120.00611 * 113.52382 * 11 9 8 13 13 C 1.37880 * 119.99594 * 293.52108 * 11 9 8 14 14 N 1.31511 * 120.00419 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99934 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46860 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47145 * 119.99963 * 15 13 11 18 18 H 1.48498 * 109.46778 * 239.99980 * 15 13 11 19 19 C 1.47025 * 125.64403 * 184.77326 * 6 4 2 20 20 C 1.50700 * 109.47392 * 239.99739 * 2 1 3 21 21 C 1.38233 * 119.98777 * 234.37931 * 20 2 1 22 22 C 1.38183 * 120.04988 * 179.76607 * 21 20 2 23 23 C 1.38501 * 120.02380 * 0.51064 * 22 21 20 24 24 F 1.35098 * 120.00938 * 179.76585 * 23 22 21 25 25 C 1.38394 * 119.97380 * 359.74575 * 23 22 21 26 26 C 1.38438 * 119.94931 * 0.02562 * 25 23 22 27 27 F 1.35112 * 120.01096 * 180.02562 * 26 25 23 28 28 H 1.08996 * 109.47409 * 303.50164 * 1 2 3 29 29 H 1.08990 * 109.47110 * 63.50389 * 1 2 3 30 30 H 1.09005 * 109.46874 * 183.50262 * 1 2 3 31 31 H 1.09004 * 109.47148 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46784 * 299.99799 * 3 2 1 33 33 H 1.08997 * 109.47261 * 59.99946 * 3 2 1 34 34 H 1.09001 * 110.36518 * 274.75111 * 7 6 4 35 35 H 1.08995 * 110.36458 * 37.06654 * 7 6 4 36 36 H 1.09001 * 111.18885 * 279.19119 * 8 7 6 37 37 H 1.08999 * 110.93825 * 155.28971 * 8 7 6 38 38 H 0.96705 * 113.99934 * 66.38643 * 10 9 8 39 39 H 0.97001 * 120.00261 * 179.97438 * 14 13 11 40 40 H 1.08999 * 109.88035 * 300.43825 * 19 6 4 41 41 H 1.08999 * 109.88484 * 61.60204 * 19 6 4 42 42 H 1.07995 * 119.97280 * 0.02562 * 21 20 2 43 43 H 1.07999 * 119.99099 * 180.25278 * 22 21 20 44 44 H 1.08003 * 120.02552 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.8313 -0.1648 1.9620 6 7 1.5981 -1.9541 1.5151 7 6 0.7098 -2.7692 0.6667 8 6 1.0110 -4.2352 1.0746 9 6 1.2297 -4.0916 2.6040 10 8 -0.0191 -4.0878 3.2988 11 6 2.1217 -5.1909 3.1206 12 1 3.1023 -4.9543 3.5062 13 6 1.6858 -6.4988 3.1009 14 7 0.4915 -6.7870 2.6319 15 14 2.7912 -7.8614 3.7419 16 1 4.0738 -7.2786 4.2116 17 1 2.1191 -8.5544 4.8704 18 1 3.0596 -8.8345 2.6528 19 6 1.9266 -2.7202 2.7262 20 6 2.0324 -0.7104 -1.2304 21 6 2.9202 -1.7628 -1.1065 22 6 3.3779 -2.4182 -2.2336 23 6 2.9558 -2.0146 -3.4894 24 9 3.4072 -2.6526 -4.5914 25 6 2.0711 -0.9578 -3.6149 26 6 1.6095 -0.3049 -2.4848 27 9 0.7454 0.7267 -2.6058 28 1 -0.3634 0.5672 0.8569 29 1 -0.3633 0.4584 -0.9196 30 1 -0.3633 -1.0258 0.0628 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 -0.3337 -2.5245 0.8650 35 1 0.9433 -2.6133 -0.3865 36 1 1.9120 -4.6035 0.5840 37 1 0.1600 -4.8818 0.8606 38 1 -0.4974 -4.9270 3.2527 39 1 0.1850 -7.7072 2.6177 40 1 3.0056 -2.8576 2.7965 41 1 1.5596 -2.1951 3.6080 42 1 3.2529 -2.0755 -0.1279 43 1 4.0683 -3.2429 -2.1354 44 1 1.7411 -0.6426 -4.5938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880412747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:20 Heat of formation + Delta-G solvation = -154.928216 kcal Electronic energy + Delta-G solvation = -31284.492986 eV Core-core repulsion = 26837.484742 eV Total energy + Delta-G solvation = -4447.008244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 21.77 seconds Orbital eigenvalues (eV) -50.14849 -50.04409 -42.04248 -39.81093 -39.04529 -36.39335 -35.98782 -34.14138 -32.05365 -31.45888 -30.58674 -30.16531 -28.23212 -27.22746 -25.19486 -24.28651 -23.95745 -22.50969 -21.42542 -20.08049 -19.42501 -19.10737 -18.38504 -18.02095 -17.15520 -17.10558 -16.98024 -16.88277 -16.57066 -16.38391 -16.14661 -15.85812 -15.53244 -15.32103 -14.87509 -14.65347 -14.53223 -14.35078 -14.02777 -13.78720 -13.71959 -13.40438 -13.26858 -13.22285 -13.05316 -12.89959 -12.77401 -12.65676 -12.53690 -12.39098 -12.28860 -12.16705 -12.02513 -11.94432 -11.27317 -10.85019 -10.61547 -10.19489 -10.07127 -9.70611 -9.65352 -8.25723 -6.39251 -0.20038 -0.08928 1.40148 1.45093 1.46054 1.54517 1.92157 2.22466 2.39401 2.75044 3.00056 3.17027 3.27366 3.36645 3.59363 3.78079 3.84045 3.90745 3.96278 3.97204 4.12609 4.26788 4.35102 4.52452 4.57813 4.62601 4.64990 4.68433 4.74720 4.79045 4.80743 4.87743 4.92307 4.98184 5.07938 5.15646 5.18421 5.21315 5.26682 5.44909 5.51248 5.64958 5.76773 6.05799 6.51356 6.64776 7.02819 7.31898 7.45069 8.80805 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.004100 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.036630 B = 6828.335831 C = 8006.100887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.027 4.027 3 C -0.123 4.123 4 C 0.532 3.468 5 O -0.579 6.579 6 N -0.603 5.603 7 C 0.102 3.898 8 C -0.126 4.126 9 C 0.238 3.762 10 O -0.595 6.595 11 C -0.560 4.560 12 H 0.053 0.947 13 C 0.039 3.961 14 N -0.908 5.908 15 Si 0.957 3.043 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.276 1.276 19 C 0.128 3.872 20 C -0.119 4.119 21 C -0.069 4.069 22 C -0.152 4.152 23 C 0.127 3.873 24 F -0.132 7.132 25 C -0.176 4.176 26 C 0.143 3.857 27 F -0.120 7.120 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.383 0.617 39 H 0.272 0.728 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.125 0.875 43 H 0.155 0.845 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 10.340 -14.496 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 C -0.180 4.180 4 C 0.322 3.678 5 O -0.460 6.460 6 N -0.335 5.335 7 C -0.019 4.019 8 C -0.165 4.165 9 C 0.198 3.802 10 O -0.405 6.405 11 C -0.598 4.598 12 H 0.071 0.929 13 C -0.162 4.162 14 N -0.547 5.547 15 Si 0.783 3.217 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.201 1.201 19 C 0.005 3.995 20 C -0.120 4.120 21 C -0.087 4.087 22 C -0.171 4.171 23 C 0.108 3.892 24 F -0.110 7.110 25 C -0.196 4.196 26 C 0.123 3.877 27 F -0.098 7.098 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.143 0.857 43 H 0.173 0.827 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.199 11.185 -14.075 17.979 hybrid contribution 0.395 -1.604 0.591 1.754 sum 0.594 9.582 -13.484 16.552 Atomic orbital electron populations 1.22307 0.90286 1.04399 1.04824 1.19683 0.98646 0.96446 0.88255 1.21701 1.01436 0.91425 1.03464 1.20552 0.80332 0.79727 0.87219 1.90652 1.35667 1.66560 1.53090 1.48643 1.48452 1.14603 1.21812 1.22764 0.93658 0.90712 0.94814 1.23144 1.01576 0.93676 0.98065 1.19554 0.82225 0.89586 0.88874 1.86084 1.35747 1.41091 1.77547 1.21777 1.02151 0.92528 1.43337 0.92876 1.25543 0.96448 1.00267 0.93932 1.69624 1.18525 1.20732 1.45866 0.85529 0.78994 0.79008 0.78203 1.20010 1.20579 1.20100 1.21835 0.98891 0.92039 0.86714 1.19601 1.00665 0.98721 0.93053 1.20919 0.94772 0.93741 0.99289 1.21313 1.02918 1.02529 0.90310 1.17300 0.96315 0.92966 0.82659 1.91538 1.87452 1.80486 1.51552 1.21159 1.00609 0.97429 1.00377 1.16800 0.91510 0.87321 0.92034 1.91482 1.66552 1.55301 1.96449 0.91363 0.88462 0.90942 0.92613 0.89340 0.91667 0.90783 0.89058 0.91935 0.90679 0.76587 0.91785 0.91973 0.93749 0.85701 0.82747 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.06 71.98 0.58 -3.12 16 2 C -0.03 -0.72 0.49 -53.67 -0.03 -0.75 16 3 C -0.12 -2.95 7.63 71.98 0.55 -2.40 16 4 C 0.53 18.76 5.03 87.66 0.44 19.20 16 5 O -0.58 -24.37 16.31 -3.02 -0.05 -24.42 16 6 N -0.60 -22.25 2.54 -811.37 -2.06 -24.31 16 7 C 0.10 3.40 4.50 86.93 0.39 3.79 16 8 C -0.13 -5.11 5.69 32.06 0.18 -4.93 16 9 C 0.24 11.12 0.85 -10.35 -0.01 11.11 16 10 O -0.59 -29.42 13.09 -148.98 -1.95 -31.37 16 11 C -0.56 -28.64 8.21 25.60 0.21 -28.43 16 12 H 0.05 2.77 7.53 -2.91 -0.02 2.75 16 13 C 0.04 1.95 5.28 84.66 0.45 2.40 16 14 N -0.91 -45.05 10.70 21.45 0.23 -44.82 16 15 Si 0.96 40.36 29.54 68.60 2.03 42.39 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 19 C 0.13 5.64 6.22 86.73 0.54 6.18 16 20 C -0.12 -2.85 3.54 -19.82 -0.07 -2.92 16 21 C -0.07 -1.76 7.06 22.26 0.16 -1.61 16 22 C -0.15 -3.33 10.03 22.32 0.22 -3.11 16 23 C 0.13 2.53 7.30 22.37 0.16 2.69 16 24 F -0.13 -2.69 17.27 44.97 0.78 -1.91 16 25 C -0.18 -3.07 10.01 22.35 0.22 -2.85 16 26 C 0.14 2.83 6.79 22.37 0.15 2.99 16 27 F -0.12 -2.20 13.37 44.97 0.60 -1.60 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.84 5.80 -2.39 -0.01 1.83 16 30 H 0.07 1.75 4.35 -2.38 -0.01 1.74 16 31 H 0.05 1.45 8.02 -2.38 -0.02 1.43 16 32 H 0.09 1.69 6.74 -2.38 -0.02 1.68 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.40 6.79 -2.39 -0.02 2.39 16 35 H 0.09 2.60 4.77 -2.39 -0.01 2.59 16 36 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 37 H 0.07 3.20 7.77 -2.39 -0.02 3.18 16 38 H 0.38 19.20 6.98 -74.05 -0.52 18.68 16 39 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 40 H 0.06 2.82 7.63 -2.39 -0.02 2.81 16 41 H 0.04 2.07 8.07 -2.39 -0.02 2.05 16 42 H 0.13 3.83 5.89 -2.91 -0.02 3.82 16 43 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 44 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -56.87 349.92 4.28 -52.60 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.55 Total: 35.21 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 4.16 Total: -1.76 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -1.83 Total: -69.13 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -2.00 Total: -55.79 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 1.38 Total: -3.51 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -56.87 4.28 -52.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880412747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.331 kcal (2) G-P(sol) polarization free energy of solvation -56.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.77 seconds