Wall clock time and date at job start Wed Apr 1 2020 00:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46822 * 2 1 4 4 C 1.52996 * 109.47396 * 239.99599 * 2 1 3 5 5 S 1.81405 * 109.47084 * 119.99628 * 2 1 3 6 6 O 1.42094 * 109.46803 * 303.61598 * 5 2 1 7 7 C 1.81399 * 102.99865 * 59.99991 * 5 2 1 8 8 C 1.52996 * 109.47044 * 179.97438 * 7 5 2 9 9 N 1.46506 * 109.47229 * 180.02562 * 8 7 5 10 10 C 1.34777 * 119.99960 * 180.02562 * 9 8 7 11 11 O 1.21568 * 120.00083 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99623 * 179.97438 * 10 9 8 13 13 C 1.39247 * 119.99999 * 185.64179 * 12 10 9 14 14 C 1.39680 * 119.57978 * 175.00272 * 13 12 10 15 15 C 1.38645 * 119.49641 * 180.02562 * 14 13 12 16 16 C 1.38356 * 118.67249 * 359.74205 * 15 14 13 17 17 C 1.40575 * 119.12726 * 0.50179 * 16 15 14 18 18 C 1.41330 * 119.78336 * 179.77140 * 17 16 15 19 19 H 1.07997 * 120.00434 * 6.08415 * 18 17 16 20 20 C 1.40031 * 119.99856 * 186.09020 * 18 17 16 21 21 N 1.30747 * 119.99962 * 6.10923 * 20 18 17 22 22 Si 1.86803 * 120.00091 * 186.10895 * 20 18 17 23 23 H 1.48501 * 109.46946 * 265.00223 * 22 20 18 24 24 H 1.48505 * 109.46856 * 25.00133 * 22 20 18 25 25 H 1.48501 * 109.47016 * 145.00089 * 22 20 18 26 26 N 1.31910 * 119.57377 * 355.01759 * 13 12 10 27 27 H 1.08995 * 109.47295 * 300.00154 * 1 2 3 28 28 H 1.08996 * 109.46866 * 60.00493 * 1 2 3 29 29 H 1.09001 * 109.46601 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46823 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46997 * 299.99426 * 3 2 1 32 32 H 1.08995 * 109.47311 * 59.99856 * 3 2 1 33 33 H 1.08994 * 109.47185 * 300.00361 * 4 2 1 34 34 H 1.09005 * 109.46624 * 60.00020 * 4 2 1 35 35 H 1.09002 * 109.47425 * 179.97438 * 4 2 1 36 36 H 1.09005 * 109.47216 * 60.00217 * 7 5 2 37 37 H 1.08994 * 109.47432 * 300.00054 * 7 5 2 38 38 H 1.08994 * 109.47514 * 60.00423 * 8 7 5 39 39 H 1.09004 * 109.47427 * 299.99883 * 8 7 5 40 40 H 0.97004 * 119.99564 * 359.97438 * 9 8 7 41 41 H 0.97003 * 120.00235 * 5.63483 * 12 10 9 42 42 H 1.08002 * 120.25031 * 359.97438 * 14 13 12 43 43 H 1.08003 * 120.66175 * 180.02562 * 15 14 13 44 44 H 1.08002 * 120.43436 * 180.24534 * 16 15 14 45 45 H 0.96993 * 119.99820 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 2.1347 -0.8551 1.4812 6 8 1.5933 -0.2356 2.6398 7 6 1.4375 -2.5203 1.3042 8 6 1.8635 -3.3808 2.4954 9 7 1.3009 -4.7259 2.3522 10 6 1.5449 -5.6618 3.2909 11 8 2.2313 -5.3897 4.2566 12 7 1.0269 -6.8991 3.1593 13 6 1.1796 -7.8303 4.1833 14 6 0.5510 -9.0737 4.0839 15 6 0.7038 -9.9994 5.1047 16 6 1.4846 -9.6616 6.1958 17 6 2.0868 -8.3921 6.2395 18 6 2.8832 -8.0308 7.3497 19 1 3.1085 -8.7606 8.1131 20 6 3.3800 -6.7262 7.4599 21 7 3.0110 -5.8114 6.6017 22 14 4.5701 -6.2929 8.8331 23 1 3.8170 -5.7239 9.9795 24 1 5.2877 -7.5171 9.2708 25 1 5.5515 -5.2932 8.3404 26 7 1.9157 -7.5267 5.2349 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.8032 -2.9712 0.3816 37 1 0.3499 -2.4573 1.2716 38 1 1.4982 -2.9302 3.4182 39 1 2.9512 -3.4439 2.5277 40 1 0.7522 -4.9427 1.5822 41 1 0.5476 -7.1409 2.3514 42 1 -0.0500 -9.3119 3.2188 43 1 0.2266 -10.9666 5.0471 44 1 1.6261 -10.3625 7.0052 45 1 3.3555 -4.9079 6.6779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881151603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:50 Heat of formation + Delta-G solvation = -42.384470 kcal Electronic energy + Delta-G solvation = -26923.382363 eV Core-core repulsion = 23067.387520 eV Total energy + Delta-G solvation = -3855.994843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.12111 -39.53147 -37.15182 -36.89602 -36.39296 -35.69311 -34.82885 -32.25115 -31.85704 -30.37576 -28.36158 -28.07257 -27.41496 -24.72579 -23.50425 -22.96098 -21.68933 -21.50349 -19.82940 -18.85016 -18.14086 -18.00445 -17.10830 -16.75233 -16.50125 -16.25019 -16.02097 -15.82877 -15.60547 -15.39332 -15.21847 -14.81633 -14.72156 -14.57505 -14.18975 -13.85585 -13.68271 -13.49379 -13.18255 -13.00125 -12.91648 -12.78227 -12.70503 -12.68866 -12.55274 -12.31726 -12.28962 -11.92704 -11.85745 -11.78193 -11.45897 -11.06772 -10.85236 -10.76688 -9.94951 -9.83859 -9.20078 -9.08580 -8.77580 -8.06051 -6.38280 0.44755 0.98048 1.29648 1.40357 1.52573 1.55899 1.63190 1.89645 2.28088 2.56530 2.80382 3.04281 3.46512 3.71922 3.76064 3.81250 3.99563 4.09021 4.19210 4.37542 4.48426 4.57103 4.63906 4.72835 4.76934 4.82848 4.84079 4.87085 4.93892 4.98571 5.01848 5.06334 5.08223 5.16958 5.26885 5.28800 5.50626 5.62570 5.69378 5.87281 5.93871 6.05291 6.33090 6.44335 6.84058 7.08592 7.27298 8.00620 8.39221 8.58932 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.002721 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.799606 B =10286.312019 C =11946.663057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.374 4.374 3 C -0.131 4.131 4 C -0.126 4.126 5 S 1.288 4.712 6 O -0.913 6.913 7 C -0.449 4.449 8 C 0.163 3.837 9 N -0.732 5.732 10 C 0.655 3.345 11 O -0.520 6.520 12 N -0.660 5.660 13 C 0.363 3.637 14 C -0.344 4.344 15 C -0.033 4.033 16 C -0.331 4.331 17 C 0.238 3.762 18 C -0.468 4.468 19 H 0.086 0.914 20 C 0.011 3.989 21 N -0.691 5.691 22 Si 0.974 3.026 23 H -0.267 1.267 24 H -0.254 1.254 25 H -0.273 1.273 26 N -0.510 5.510 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.171 0.829 37 H 0.092 0.908 38 H 0.022 0.978 39 H 0.077 0.923 40 H 0.408 0.592 41 H 0.419 0.581 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.104 0.896 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 11.016 -21.866 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.474 4.474 3 C -0.189 4.189 4 C -0.184 4.184 5 S 1.488 4.512 6 O -0.908 6.908 7 C -0.586 4.586 8 C 0.037 3.963 9 N -0.394 5.394 10 C 0.353 3.647 11 O -0.388 6.388 12 N -0.311 5.311 13 C 0.123 3.877 14 C -0.370 4.370 15 C -0.058 4.058 16 C -0.354 4.354 17 C 0.113 3.887 18 C -0.499 4.499 19 H 0.104 0.896 20 C -0.214 4.214 21 N -0.310 5.310 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.177 1.177 25 H -0.198 1.198 26 N -0.229 5.229 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.188 0.812 37 H 0.111 0.889 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.244 0.756 41 H 0.256 0.744 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.394 12.769 -20.209 23.946 hybrid contribution -3.072 -0.635 0.189 3.142 sum -1.678 12.134 -20.020 23.471 Atomic orbital electron populations 1.21996 0.94031 1.02545 1.02178 1.27085 1.01357 1.05753 1.13247 1.21629 1.02989 0.92098 1.02190 1.21715 1.03441 1.00031 0.93218 1.69908 1.14383 0.84349 0.82571 1.93038 1.80533 1.73487 1.43754 1.27934 1.09696 1.16069 1.04883 1.20508 0.98967 0.80833 0.95957 1.44970 1.57792 1.10562 1.26037 1.16754 0.82261 0.81414 0.84226 1.91360 1.38823 1.78830 1.29751 1.42359 1.58566 1.10483 1.19671 1.18847 0.92904 0.87244 0.88695 1.20912 1.15621 0.95555 1.04894 1.21034 0.94501 0.98171 0.92052 1.21808 1.11061 0.99876 1.02682 1.18875 0.90516 0.88090 0.91267 1.19877 1.27605 0.96994 1.05401 0.89598 1.27036 0.98722 0.96401 0.99259 1.70462 1.30889 1.01646 1.27993 0.85325 0.78132 0.78957 0.78055 1.19201 1.17740 1.19841 1.68582 1.19987 1.33252 1.01068 0.95301 0.90515 0.91580 0.88997 0.90219 0.94914 0.90593 0.91140 0.88463 0.81155 0.88888 0.95901 0.90440 0.75563 0.74405 0.84883 0.84396 0.87765 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.29 71.98 0.60 -1.62 16 2 C -0.37 -4.20 0.94 -10.79 -0.01 -4.21 16 3 C -0.13 -1.48 8.48 71.98 0.61 -0.87 16 4 C -0.13 -0.49 8.32 71.98 0.60 0.11 16 5 S 1.29 21.45 12.09 -56.49 -0.68 20.77 16 6 O -0.91 -30.07 18.09 -148.98 -2.70 -32.77 16 7 C -0.45 -6.92 5.15 71.98 0.37 -6.55 16 8 C 0.16 4.44 5.68 86.38 0.49 4.93 16 9 N -0.73 -20.94 5.56 -478.55 -2.66 -23.60 16 10 C 0.66 27.56 8.52 179.06 1.53 29.09 16 11 O -0.52 -28.37 12.23 -3.93 -0.05 -28.42 16 12 N -0.66 -25.90 5.39 -322.13 -1.74 -27.64 16 13 C 0.36 18.00 7.43 133.26 0.99 18.99 16 14 C -0.34 -14.84 9.95 22.72 0.23 -14.62 16 15 C -0.03 -1.47 10.15 22.40 0.23 -1.24 16 16 C -0.33 -17.11 9.83 22.87 0.22 -16.89 16 17 C 0.24 14.15 6.53 40.19 0.26 14.41 16 18 C -0.47 -27.47 9.13 23.47 0.21 -27.26 16 19 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 20 C 0.01 0.64 5.48 85.29 0.47 1.11 16 21 N -0.69 -41.63 9.19 21.84 0.20 -41.43 16 22 Si 0.97 42.29 29.56 68.60 2.03 44.32 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 N -0.51 -30.22 5.77 -186.37 -1.08 -31.29 16 27 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.86 6.68 -2.39 -0.02 0.84 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.13 6.68 -2.39 -0.02 0.11 16 34 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 35 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.17 1.01 7.00 -2.39 -0.02 0.99 16 37 H 0.09 1.52 6.99 -2.39 -0.02 1.51 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.41 7.83 8.49 -92.71 -0.79 7.04 16 41 H 0.42 11.64 8.72 -92.71 -0.81 10.83 16 42 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 44 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 45 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 Total: -1.00 -94.07 381.24 -0.45 -94.52 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.58 Total: 30.15 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.79 Total: -4.62 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -5.27 Total: -123.96 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -2.74 Total: -61.19 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 21.45 SS G_CDS: -0.68 Total: 20.77 kcal Total: -94.07 -0.45 -94.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.138 kcal (2) G-P(sol) polarization free energy of solvation -94.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds