Wall clock time and date at job start Wed Apr 1 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47181 * 2 1 4 4 C 1.53002 * 109.47015 * 239.99848 * 2 1 3 5 5 S 1.81398 * 109.47160 * 119.99997 * 2 1 3 6 6 O 1.42096 * 109.47006 * 176.38747 * 5 2 1 7 7 C 1.81404 * 102.99791 * 59.99929 * 5 2 1 8 8 C 1.53009 * 109.46925 * 180.02562 * 7 5 2 9 9 N 1.46501 * 109.46968 * 180.02562 * 8 7 5 10 10 C 1.34773 * 119.99406 * 179.97438 * 9 8 7 11 11 O 1.21569 * 120.00533 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99498 * 179.97438 * 10 9 8 13 13 C 1.39248 * 120.00000 * 174.20716 * 12 10 9 14 14 C 1.39686 * 119.57513 * 341.17598 * 13 12 10 15 15 C 1.38644 * 119.49409 * 179.72681 * 14 13 12 16 16 C 1.38359 * 118.66984 * 0.54078 * 15 14 13 17 17 C 1.40571 * 119.13053 * 359.72325 * 16 15 14 18 18 C 1.41333 * 119.78164 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00597 * 6.32928 * 18 17 16 20 20 C 1.40032 * 119.99378 * 186.32833 * 18 17 16 21 21 N 1.30741 * 120.00112 * 353.66549 * 20 18 17 22 22 Si 1.86798 * 119.99687 * 173.67165 * 20 18 17 23 23 H 1.48497 * 109.47352 * 94.98185 * 22 20 18 24 24 H 1.48500 * 109.47240 * 214.98261 * 22 20 18 25 25 H 1.48505 * 109.47213 * 334.98140 * 22 20 18 26 26 N 1.31905 * 119.57467 * 161.44910 * 13 12 10 27 27 H 1.08999 * 109.47266 * 299.99876 * 1 2 3 28 28 H 1.09000 * 109.47202 * 60.00170 * 1 2 3 29 29 H 1.09006 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47227 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46914 * 300.00006 * 3 2 1 32 32 H 1.08999 * 109.46919 * 59.99911 * 3 2 1 33 33 H 1.08997 * 109.47335 * 300.00260 * 4 2 1 34 34 H 1.09007 * 109.46944 * 60.00259 * 4 2 1 35 35 H 1.08997 * 109.47007 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46985 * 60.00267 * 7 5 2 37 37 H 1.08999 * 109.47201 * 299.99611 * 7 5 2 38 38 H 1.08999 * 109.46824 * 299.99793 * 8 7 5 39 39 H 1.08994 * 109.46907 * 59.99469 * 8 7 5 40 40 H 0.96998 * 120.00221 * 359.97438 * 9 8 7 41 41 H 0.96999 * 120.00268 * 354.20675 * 12 10 9 42 42 H 1.07996 * 120.24965 * 359.97438 * 14 13 12 43 43 H 1.07997 * 120.66568 * 180.24746 * 15 14 13 44 44 H 1.08003 * 120.43105 * 179.75376 * 16 15 14 45 45 H 0.97006 * 119.99804 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1347 -0.8551 1.4811 6 8 3.5532 -0.9286 1.4396 7 6 1.4375 -2.5204 1.3040 8 6 1.8624 -3.3806 2.4959 9 7 1.2999 -4.7257 2.3526 10 6 1.5439 -5.6616 3.2912 11 8 2.2304 -5.3896 4.2569 12 7 1.0259 -6.8989 3.1596 13 6 1.3747 -7.8994 4.0631 14 6 2.5253 -7.7546 4.8418 15 6 2.8679 -8.7492 5.7449 16 6 2.0589 -9.8677 5.8391 17 6 0.9172 -9.9571 5.0238 18 6 0.0809 -11.0932 5.1091 19 1 0.2606 -11.8404 5.8680 20 6 -0.9807 -11.2501 4.2095 21 7 -1.2754 -10.2902 3.3723 22 14 -1.9759 -12.8309 4.2060 23 1 -3.1839 -12.6573 5.0521 24 1 -2.3873 -13.1537 2.8161 25 1 -1.1477 -13.9385 4.7469 26 7 0.6172 -8.9741 4.1688 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 1.8032 -2.9712 0.3814 37 1 0.3498 -2.4574 1.2714 38 1 2.9501 -3.4437 2.5289 39 1 1.4965 -2.9296 3.4182 40 1 0.7518 -4.9427 1.5822 41 1 0.4101 -7.0924 2.4355 42 1 3.1411 -6.8729 4.7439 43 1 3.7511 -8.6550 6.3592 44 1 2.3012 -10.6615 6.5302 45 1 -2.0110 -10.3988 2.7494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881151604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:56 Heat of formation + Delta-G solvation = -27.846513 kcal Electronic energy + Delta-G solvation = -26282.391502 eV Core-core repulsion = 22427.027072 eV Total energy + Delta-G solvation = -3855.364430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.01619 -37.91111 -36.69188 -36.05302 -35.38276 -34.17823 -33.25163 -30.91307 -30.34357 -28.85784 -27.83750 -27.70791 -25.44610 -23.70341 -21.84840 -21.54270 -21.15119 -20.26838 -18.29104 -17.50607 -17.29546 -16.74502 -16.24304 -15.87372 -15.40991 -15.07857 -14.87731 -14.71433 -14.56058 -14.33766 -14.14373 -14.06934 -13.41881 -13.28129 -12.89953 -12.86013 -12.71696 -12.43159 -12.29949 -12.24620 -12.17884 -11.96442 -11.66381 -11.50815 -11.40514 -11.25862 -11.08175 -10.88832 -10.65179 -10.26918 -10.11009 -9.81904 -9.30390 -9.08102 -8.92217 -8.54559 -8.00206 -7.65575 -7.03682 -6.40752 -4.47831 1.05315 2.18115 2.69537 2.95884 3.01990 3.09073 3.12787 3.26792 3.43457 3.70764 3.95957 4.20770 4.27429 4.44773 4.59665 4.62522 4.64821 4.80615 5.06293 5.09067 5.17158 5.22966 5.31010 5.32171 5.40361 5.56535 5.60360 5.66849 5.70106 5.75061 5.93011 6.18344 6.44323 6.48355 6.74193 6.84605 6.96057 7.11607 7.24232 7.53689 7.64528 7.93748 8.08995 8.19084 8.44553 8.72287 8.90986 9.05738 10.07369 10.32717 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.002041 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.490852 B =13714.173123 C =14789.269319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.388 4.388 3 C -0.125 4.125 4 C -0.145 4.145 5 S 1.264 4.736 6 O -0.835 6.835 7 C -0.468 4.468 8 C 0.162 3.838 9 N -0.746 5.746 10 C 0.706 3.294 11 O -0.568 6.568 12 N -0.658 5.658 13 C 0.373 3.627 14 C -0.311 4.311 15 C -0.049 4.049 16 C -0.291 4.291 17 C 0.280 3.720 18 C -0.436 4.436 19 H 0.085 0.915 20 C 0.071 3.929 21 N -0.724 5.724 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.261 1.261 26 N -0.509 5.509 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.403 0.597 42 H 0.133 0.867 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 21.132 -9.247 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.486 4.486 3 C -0.183 4.183 4 C -0.203 4.203 5 S 1.460 4.540 6 O -0.830 6.830 7 C -0.604 4.604 8 C 0.037 3.963 9 N -0.404 5.404 10 C 0.405 3.595 11 O -0.444 6.444 12 N -0.305 5.305 13 C 0.138 3.862 14 C -0.336 4.336 15 C -0.074 4.074 16 C -0.314 4.314 17 C 0.153 3.847 18 C -0.468 4.468 19 H 0.103 0.897 20 C -0.153 4.153 21 N -0.347 5.347 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.185 1.185 26 N -0.227 5.227 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.238 0.762 42 H 0.150 0.850 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.944 21.738 -8.352 23.369 hybrid contribution 0.274 -1.860 -2.378 3.031 sum -1.669 19.878 -10.730 22.651 Atomic orbital electron populations 1.21607 0.90545 1.02725 1.03329 1.27187 1.03489 1.05021 1.12895 1.21536 1.01322 0.92379 1.03081 1.21935 1.01468 0.99829 0.97043 1.70834 0.91701 0.89968 1.01491 1.93135 1.25960 1.83126 1.80800 1.28080 1.10591 1.17631 1.04128 1.20588 0.98923 0.80876 0.95926 1.45109 1.57658 1.11455 1.26165 1.15771 0.80679 0.80156 0.82862 1.90846 1.42756 1.79672 1.31154 1.42246 1.48333 1.08201 1.31747 1.18218 0.90291 0.88376 0.89317 1.21628 1.01638 1.03788 1.06581 1.20812 0.97214 0.93263 0.96090 1.21704 1.01104 1.00355 1.08205 1.18170 0.89769 0.90214 0.86504 1.19544 1.09525 1.04079 1.13702 0.89686 1.26035 0.97116 0.97451 0.94676 1.70129 1.21582 1.30104 1.12842 0.86332 0.80061 0.82224 0.78281 1.19580 1.20219 1.18509 1.68011 1.28936 1.01086 1.24704 0.90900 0.91825 0.91878 0.92155 0.91551 0.91301 0.92294 0.91815 0.92098 0.88584 0.85583 0.91215 0.90438 0.77033 0.76192 0.84978 0.88344 0.88250 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 8.32 37.16 0.31 -0.10 16 2 C -0.39 -2.16 0.94 -90.62 -0.08 -2.25 16 3 C -0.12 -0.67 8.48 37.16 0.32 -0.35 16 4 C -0.14 -1.03 8.29 37.16 0.31 -0.72 16 5 S 1.26 8.80 12.09 -107.50 -1.30 7.50 16 6 O -0.84 -11.35 18.09 -35.23 -0.64 -11.99 16 7 C -0.47 -3.34 5.15 37.16 0.19 -3.14 16 8 C 0.16 1.83 5.68 -4.04 -0.02 1.81 16 9 N -0.75 -9.85 5.56 -65.23 -0.36 -10.21 16 10 C 0.71 13.32 8.40 -86.92 -0.73 12.59 16 11 O -0.57 -12.72 13.15 5.30 0.07 -12.65 16 12 N -0.66 -13.50 5.42 -15.79 -0.09 -13.59 16 13 C 0.37 9.45 7.51 -154.99 -1.16 8.29 16 14 C -0.31 -7.86 8.83 -38.89 -0.34 -8.20 16 15 C -0.05 -1.19 10.15 -39.39 -0.40 -1.59 16 16 C -0.29 -7.44 9.83 -38.66 -0.38 -7.82 16 17 C 0.28 7.81 6.54 -85.00 -0.56 7.26 16 18 C -0.44 -11.74 9.13 -37.73 -0.34 -12.08 16 19 H 0.09 2.14 7.85 -52.49 -0.41 1.73 16 20 C 0.07 1.81 5.49 -17.34 -0.10 1.71 16 21 N -0.72 -18.84 11.49 55.55 0.64 -18.20 16 22 Si 0.91 18.49 29.56 -169.99 -5.03 13.47 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 26 N -0.51 -14.03 7.92 -10.26 -0.08 -14.11 16 27 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.17 6.68 -51.93 -0.35 -0.17 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.39 6.68 -51.93 -0.35 0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.75 7.00 -51.92 -0.36 0.38 16 37 H 0.13 0.52 6.99 -51.92 -0.36 0.15 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.40 4.02 8.49 -40.82 -0.35 3.67 16 41 H 0.40 7.31 8.84 -40.82 -0.36 6.94 16 42 H 0.13 3.33 5.34 -52.50 -0.28 3.05 16 43 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 44 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 45 H 0.27 6.31 8.29 -40.82 -0.34 5.97 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -37.49 382.89 -10.62 -48.10 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.60 Total: 10.52 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.00 Total: -4.61 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.11 Total: -56.10 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.57 Total: -24.64 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: 8.80 SS G_CDS: -1.30 Total: 7.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.49 -10.62 -48.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.257 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds