Wall clock time and date at job start Wed Apr 1 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47181 * 2 1 4 4 C 1.53002 * 109.47015 * 239.99848 * 2 1 3 5 5 S 1.81398 * 109.47160 * 119.99997 * 2 1 3 6 6 O 1.42096 * 109.47006 * 176.38747 * 5 2 1 7 7 C 1.81404 * 102.99791 * 59.99929 * 5 2 1 8 8 C 1.53009 * 109.46925 * 180.02562 * 7 5 2 9 9 N 1.46501 * 109.46968 * 180.02562 * 8 7 5 10 10 C 1.34773 * 119.99406 * 179.97438 * 9 8 7 11 11 O 1.21569 * 120.00533 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99498 * 179.97438 * 10 9 8 13 13 C 1.39248 * 120.00000 * 174.20716 * 12 10 9 14 14 C 1.39686 * 119.57513 * 341.17598 * 13 12 10 15 15 C 1.38644 * 119.49409 * 179.72681 * 14 13 12 16 16 C 1.38359 * 118.66984 * 0.54078 * 15 14 13 17 17 C 1.40571 * 119.13053 * 359.72325 * 16 15 14 18 18 C 1.41333 * 119.78164 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00597 * 6.32928 * 18 17 16 20 20 C 1.40032 * 119.99378 * 186.32833 * 18 17 16 21 21 N 1.30741 * 120.00112 * 353.66549 * 20 18 17 22 22 Si 1.86798 * 119.99687 * 173.67165 * 20 18 17 23 23 H 1.48497 * 109.47352 * 94.98185 * 22 20 18 24 24 H 1.48500 * 109.47240 * 214.98261 * 22 20 18 25 25 H 1.48505 * 109.47213 * 334.98140 * 22 20 18 26 26 N 1.31905 * 119.57467 * 161.44910 * 13 12 10 27 27 H 1.08999 * 109.47266 * 299.99876 * 1 2 3 28 28 H 1.09000 * 109.47202 * 60.00170 * 1 2 3 29 29 H 1.09006 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47227 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46914 * 300.00006 * 3 2 1 32 32 H 1.08999 * 109.46919 * 59.99911 * 3 2 1 33 33 H 1.08997 * 109.47335 * 300.00260 * 4 2 1 34 34 H 1.09007 * 109.46944 * 60.00259 * 4 2 1 35 35 H 1.08997 * 109.47007 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.46985 * 60.00267 * 7 5 2 37 37 H 1.08999 * 109.47201 * 299.99611 * 7 5 2 38 38 H 1.08999 * 109.46824 * 299.99793 * 8 7 5 39 39 H 1.08994 * 109.46907 * 59.99469 * 8 7 5 40 40 H 0.96998 * 120.00221 * 359.97438 * 9 8 7 41 41 H 0.96999 * 120.00268 * 354.20675 * 12 10 9 42 42 H 1.07996 * 120.24965 * 359.97438 * 14 13 12 43 43 H 1.07997 * 120.66568 * 180.24746 * 15 14 13 44 44 H 1.08003 * 120.43105 * 179.75376 * 16 15 14 45 45 H 0.97006 * 119.99804 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1347 -0.8551 1.4811 6 8 3.5532 -0.9286 1.4396 7 6 1.4375 -2.5204 1.3040 8 6 1.8624 -3.3806 2.4959 9 7 1.2999 -4.7257 2.3526 10 6 1.5439 -5.6616 3.2912 11 8 2.2304 -5.3896 4.2569 12 7 1.0259 -6.8989 3.1596 13 6 1.3747 -7.8994 4.0631 14 6 2.5253 -7.7546 4.8418 15 6 2.8679 -8.7492 5.7449 16 6 2.0589 -9.8677 5.8391 17 6 0.9172 -9.9571 5.0238 18 6 0.0809 -11.0932 5.1091 19 1 0.2606 -11.8404 5.8680 20 6 -0.9807 -11.2501 4.2095 21 7 -1.2754 -10.2902 3.3723 22 14 -1.9759 -12.8309 4.2060 23 1 -3.1839 -12.6573 5.0521 24 1 -2.3873 -13.1537 2.8161 25 1 -1.1477 -13.9385 4.7469 26 7 0.6172 -8.9741 4.1688 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 1.8032 -2.9712 0.3814 37 1 0.3498 -2.4574 1.2714 38 1 2.9501 -3.4437 2.5289 39 1 1.4965 -2.9296 3.4182 40 1 0.7518 -4.9427 1.5822 41 1 0.4101 -7.0924 2.4355 42 1 3.1411 -6.8729 4.7439 43 1 3.7511 -8.6550 6.3592 44 1 2.3012 -10.6615 6.5302 45 1 -2.0110 -10.3988 2.7494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881151604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:56 Heat of formation + Delta-G solvation = -55.358059 kcal Electronic energy + Delta-G solvation = -26283.584492 eV Core-core repulsion = 22427.027072 eV Total energy + Delta-G solvation = -3856.557420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61018 -39.72861 -37.16099 -36.90765 -36.64220 -35.90099 -35.10045 -32.35593 -32.03820 -30.53459 -28.36743 -28.07875 -27.37112 -24.83027 -23.49569 -23.27639 -21.90447 -21.69770 -19.87143 -19.13536 -18.28062 -18.12089 -17.23558 -17.01834 -16.64312 -16.40685 -16.19947 -15.96338 -15.75465 -15.49639 -15.25186 -15.07746 -14.76645 -14.58968 -14.30793 -13.95170 -13.81140 -13.54372 -13.19304 -13.06953 -12.93391 -12.92227 -12.80173 -12.72296 -12.64597 -12.56609 -12.33538 -11.92704 -11.86000 -11.84621 -11.59916 -11.13552 -10.98753 -10.76224 -10.22152 -9.95929 -9.63181 -9.20238 -8.93140 -8.30542 -6.49001 0.42176 0.82314 1.12790 1.44137 1.53604 1.56400 1.59525 1.68966 2.10017 2.25831 2.78235 2.89322 3.23643 3.66627 3.74647 3.80296 3.92215 3.97080 4.18233 4.32831 4.43918 4.56717 4.62819 4.64588 4.71902 4.82714 4.83339 4.87445 4.88862 4.93948 4.98226 5.01770 5.05811 5.16813 5.25399 5.27296 5.37370 5.50569 5.59212 5.69087 5.87730 5.97900 6.22321 6.29245 6.75141 6.90385 7.03521 7.48181 8.10685 8.46132 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.002041 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.490852 B =13714.173123 C =14789.269319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.376 4.376 3 C -0.131 4.131 4 C -0.151 4.151 5 S 1.297 4.703 6 O -0.909 6.909 7 C -0.458 4.458 8 C 0.154 3.846 9 N -0.720 5.720 10 C 0.703 3.297 11 O -0.605 6.605 12 N -0.654 5.654 13 C 0.365 3.635 14 C -0.328 4.328 15 C -0.048 4.048 16 C -0.309 4.309 17 C 0.245 3.755 18 C -0.465 4.465 19 H 0.091 0.909 20 C 0.026 3.974 21 N -0.753 5.753 22 Si 0.989 3.011 23 H -0.263 1.263 24 H -0.267 1.267 25 H -0.258 1.258 26 N -0.532 5.532 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.169 0.831 38 H 0.039 0.961 39 H 0.091 0.909 40 H 0.414 0.586 41 H 0.414 0.586 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 21.561 -10.154 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.476 4.476 3 C -0.189 4.189 4 C -0.209 4.209 5 S 1.497 4.503 6 O -0.904 6.904 7 C -0.594 4.594 8 C 0.030 3.970 9 N -0.379 5.379 10 C 0.403 3.597 11 O -0.484 6.484 12 N -0.302 5.302 13 C 0.129 3.871 14 C -0.353 4.353 15 C -0.073 4.073 16 C -0.332 4.332 17 C 0.119 3.881 18 C -0.497 4.497 19 H 0.110 0.890 20 C -0.196 4.196 21 N -0.375 5.375 22 Si 0.809 3.191 23 H -0.188 1.188 24 H -0.192 1.192 25 H -0.181 1.181 26 N -0.252 5.252 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.112 0.888 37 H 0.187 0.813 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.252 0.748 41 H 0.250 0.750 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.132 0.868 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.495 22.216 -9.296 24.499 hybrid contribution 1.052 -1.856 -2.189 3.056 sum -3.443 20.361 -11.485 23.629 Atomic orbital electron populations 1.21727 0.87843 1.04064 1.04926 1.27100 1.05426 1.04487 1.10583 1.21630 0.99823 0.92581 1.04888 1.22005 0.99683 1.00724 0.98454 1.69986 0.89081 0.89197 1.02060 1.93030 1.29985 1.84339 1.83071 1.28024 1.13166 1.16300 1.01939 1.20771 0.97287 0.80304 0.98669 1.44955 1.56708 1.11023 1.25165 1.15965 0.80203 0.80221 0.83348 1.90810 1.44309 1.80229 1.33070 1.42133 1.48747 1.08046 1.31301 1.18541 0.90114 0.88707 0.89762 1.21807 1.02032 1.04119 1.07376 1.21160 0.97829 0.92444 0.95829 1.21879 1.01138 1.01420 1.08761 1.18701 0.90992 0.91027 0.87408 1.19930 1.10612 1.04323 1.14831 0.89046 1.26966 0.97739 1.01168 0.93737 1.70191 1.22119 1.32091 1.13063 0.85098 0.78115 0.77191 0.78687 1.18797 1.19189 1.18138 1.68051 1.29823 1.01822 1.25490 0.88314 0.91365 0.90710 0.94711 0.90466 0.88852 0.91641 0.90754 0.95037 0.88788 0.81315 0.94250 0.89097 0.74849 0.74971 0.85111 0.85322 0.86829 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.34 8.32 71.98 0.60 0.26 16 2 C -0.38 -3.45 0.94 -10.79 -0.01 -3.47 16 3 C -0.13 -1.21 8.48 71.98 0.61 -0.60 16 4 C -0.15 -1.99 8.29 71.98 0.60 -1.40 16 5 S 1.30 16.81 12.09 -56.49 -0.68 16.13 16 6 O -0.91 -25.83 18.09 -148.98 -2.70 -28.52 16 7 C -0.46 -5.51 5.15 71.99 0.37 -5.14 16 8 C 0.15 3.34 5.68 86.38 0.49 3.83 16 9 N -0.72 -18.08 5.56 -478.55 -2.66 -20.74 16 10 C 0.70 26.44 8.40 179.06 1.50 27.94 16 11 O -0.60 -27.49 13.15 -3.93 -0.05 -27.54 16 12 N -0.65 -26.94 5.42 -322.13 -1.75 -28.68 16 13 C 0.37 18.83 7.51 133.26 1.00 19.83 16 14 C -0.33 -16.86 8.83 22.72 0.20 -16.66 16 15 C -0.05 -2.36 10.15 22.40 0.23 -2.13 16 16 C -0.31 -16.06 9.83 22.87 0.22 -15.83 16 17 C 0.25 13.95 6.54 40.19 0.26 14.21 16 18 C -0.47 -25.28 9.13 23.47 0.21 -25.07 16 19 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 20 C 0.03 1.29 5.49 85.29 0.47 1.76 16 21 N -0.75 -39.06 11.49 21.84 0.25 -38.81 16 22 Si 0.99 37.29 29.56 68.60 2.03 39.32 16 23 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 26 N -0.53 -29.92 7.92 -186.37 -1.48 -31.40 16 27 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.06 6.68 -2.38 -0.02 0.04 16 30 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.76 6.68 -2.39 -0.02 0.74 16 34 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 1.26 7.00 -2.39 -0.02 1.25 16 37 H 0.17 0.60 6.99 -2.39 -0.02 0.59 16 38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.41 7.44 8.49 -92.71 -0.79 6.65 16 41 H 0.41 14.87 8.84 -92.71 -0.82 14.05 16 42 H 0.13 6.74 5.34 -3.13 -0.02 6.72 16 43 H 0.13 5.34 8.06 -2.91 -0.02 5.32 16 44 H 0.11 5.37 8.06 -2.91 -0.02 5.35 16 45 H 0.28 12.92 8.29 -92.70 -0.77 12.15 16 Total: -1.00 -85.28 382.89 -0.86 -86.14 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.58 Total: 36.56 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 6.76 Total: -2.45 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -5.63 Total: -119.63 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -2.75 Total: -56.06 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Atomic # 16 Polarization: 16.81 SS G_CDS: -0.68 Total: 16.13 kcal Total: -85.28 -0.86 -86.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.777 kcal (2) G-P(sol) polarization free energy of solvation -85.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds