Wall clock time and date at job start Wed Apr 1 2020 00:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47524 * 2 1 4 4 C 1.50704 * 109.47179 * 239.99855 * 2 1 3 5 5 H 1.07997 * 120.00585 * 242.62039 * 4 2 1 6 6 C 1.37878 * 119.99910 * 62.61451 * 4 2 1 7 7 N 1.31515 * 120.00141 * 188.89307 * 6 4 2 8 8 Si 1.86803 * 119.99793 * 8.89342 * 6 4 2 9 9 H 1.48501 * 109.47226 * 91.96484 * 8 6 4 10 10 H 1.48503 * 109.47342 * 211.96300 * 8 6 4 11 11 H 1.48495 * 109.47162 * 331.96590 * 8 6 4 12 12 C 1.53004 * 109.47069 * 120.00290 * 2 1 3 13 13 S 1.81395 * 109.47063 * 299.99622 * 12 2 1 14 14 O 1.42108 * 110.54281 * 63.66976 * 13 12 2 15 15 O 1.42093 * 110.54287 * 286.91881 * 13 12 2 16 16 N 1.65600 * 104.45076 * 175.29239 * 13 12 2 17 17 C 1.46500 * 119.99920 * 63.34799 * 16 13 12 18 18 C 1.50698 * 112.84666 * 53.42374 * 17 16 13 19 19 N 1.31790 * 119.12496 * 46.92076 * 18 17 16 20 20 C 1.32343 * 120.81881 * 180.02562 * 19 18 17 21 21 C 1.38594 * 119.10285 * 359.97438 * 20 19 18 22 22 C 1.38592 * 118.39935 * 0.02562 * 21 20 19 23 23 N 1.31796 * 119.11897 * 226.91980 * 18 17 16 24 24 C 1.53783 * 113.68841 * 184.68910 * 17 16 13 25 25 C 1.53779 * 87.08112 * 89.13123 * 24 17 16 26 26 C 1.53777 * 113.61536 * 282.22714 * 17 16 13 27 27 H 1.09002 * 109.47392 * 312.73086 * 1 2 3 28 28 H 1.09002 * 109.46992 * 72.72875 * 1 2 3 29 29 H 1.08999 * 109.47705 * 192.73104 * 1 2 3 30 30 H 1.08997 * 109.47208 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47091 * 299.99978 * 3 2 1 32 32 H 1.09000 * 109.46560 * 60.00162 * 3 2 1 33 33 H 0.97005 * 119.99731 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46975 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.46969 * 59.99630 * 12 2 1 36 36 H 0.97004 * 120.00084 * 243.35146 * 16 13 12 37 37 H 1.07999 * 120.44536 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.79721 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.44445 * 179.97438 * 22 21 20 40 40 H 1.09002 * 113.60865 * 203.67514 * 24 17 16 41 41 H 1.08999 * 113.61755 * 334.57797 * 24 17 16 42 42 H 1.09004 * 113.61350 * 270.88183 * 25 24 17 43 43 H 1.08999 * 113.61919 * 139.97755 * 25 24 17 44 44 H 1.09001 * 113.61697 * 25.34577 * 26 17 16 45 45 H 1.08997 * 113.61728 * 156.25417 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6178 -1.6126 -1.1320 6 6 1.7443 -0.2088 -2.4820 7 7 2.0283 -0.9146 -3.5548 8 14 0.9505 1.4735 -2.6540 9 1 2.0070 2.5066 -2.8015 10 1 0.0741 1.4872 -3.8527 11 1 0.1395 1.7641 -1.4445 12 6 2.0399 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0171 0.0738 2.7968 15 8 2.1261 1.3619 2.9139 16 7 1.9435 -0.8129 3.9905 17 6 3.3758 -1.0022 4.2333 18 6 4.1263 0.2993 4.3510 19 7 3.6367 1.2553 5.1148 20 6 4.2677 2.4116 5.2420 21 6 5.4578 2.6087 4.5595 22 6 5.9408 1.5801 3.7661 23 7 5.2548 0.4512 3.6875 24 6 3.6845 -1.9960 5.3656 25 6 3.6660 -3.1000 4.2953 26 6 4.0351 -2.0091 3.2761 27 1 -0.3634 0.6973 0.7549 28 1 -0.3633 0.3051 -0.9813 29 1 -0.3634 -1.0024 0.2265 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.8260 -0.5615 -4.4353 34 1 3.1300 -0.7217 1.2490 35 1 1.6765 -1.7490 1.2492 36 1 1.2928 -1.2422 4.5678 37 1 3.8613 3.1907 5.8698 38 1 5.9952 3.5417 4.6432 39 1 6.8648 1.6983 3.2195 40 1 4.6629 -1.8471 5.8224 41 1 2.8829 -2.0852 6.0988 42 1 2.6794 -3.5338 4.1324 43 1 4.4432 -3.8522 4.4304 44 1 3.5166 -2.1090 2.3225 45 1 5.1093 -1.8639 3.1618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882682556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:44 Heat of formation + Delta-G solvation = 31.328453 kcal Electronic energy + Delta-G solvation = -29699.282205 eV Core-core repulsion = 25846.483794 eV Total energy + Delta-G solvation = -3852.798411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22570 -39.09874 -36.77006 -36.59928 -35.43480 -33.66615 -32.71468 -31.93069 -31.84115 -27.73960 -26.39656 -26.12936 -25.77504 -25.00519 -24.32493 -22.71327 -20.10656 -19.62780 -18.92407 -17.62746 -17.37105 -17.19626 -16.17986 -16.06551 -15.67600 -15.60155 -15.08935 -14.92898 -14.67432 -14.52889 -13.94178 -13.51520 -13.40877 -13.16186 -12.92864 -12.72538 -12.43413 -12.39948 -12.23833 -11.70136 -11.55596 -11.51288 -11.34134 -11.13965 -11.09260 -10.92935 -10.86959 -10.75960 -10.66142 -10.38772 -10.15804 -10.06739 -9.96299 -9.53462 -9.36860 -9.12937 -8.95232 -8.69794 -8.53635 -6.16730 -4.16050 0.70936 0.92486 1.21226 2.98599 3.24776 3.34511 3.38145 3.63604 3.81618 4.11471 4.16164 4.34559 4.42986 4.55001 4.63638 4.65784 4.71734 4.91728 5.01837 5.13332 5.14432 5.25276 5.38013 5.49785 5.56060 5.66558 5.68220 5.75671 5.81871 5.92180 5.95888 6.04455 6.19803 6.30508 6.36185 6.41152 6.43455 6.51641 6.68468 6.87226 7.02305 7.08624 7.12615 7.31384 7.62239 8.17155 8.40676 8.84877 9.45909 10.95831 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.004802 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.947305 B = 5829.502384 C = 6231.345718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.055 3.945 3 C -0.174 4.174 4 C -0.502 4.502 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.869 3.131 9 H -0.283 1.283 10 H -0.299 1.299 11 H -0.241 1.241 12 C -0.578 4.578 13 S 2.590 3.410 14 O -0.963 6.963 15 O -0.957 6.957 16 N -1.093 6.093 17 C 0.216 3.784 18 C 0.319 3.681 19 N -0.482 5.482 20 C 0.153 3.847 21 C -0.229 4.229 22 C 0.148 3.852 23 N -0.506 5.506 24 C -0.116 4.116 25 C -0.137 4.137 26 C -0.152 4.152 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.418 0.582 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 0.806 19.211 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.053 3.947 3 C -0.230 4.230 4 C -0.541 4.541 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.700 3.300 9 H -0.211 1.211 10 H -0.227 1.227 11 H -0.167 1.167 12 C -0.711 4.711 13 S 2.688 3.312 14 O -0.953 6.953 15 O -0.947 6.947 16 N -0.848 5.848 17 C 0.124 3.876 18 C 0.049 3.951 19 N -0.195 5.195 20 C -0.013 4.013 21 C -0.251 4.251 22 C -0.018 4.018 23 N -0.220 5.220 24 C -0.156 4.156 25 C -0.174 4.174 26 C -0.191 4.191 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.252 0.748 37 H 0.180 0.820 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.079 0.846 18.951 19.920 hybrid contribution 0.197 1.342 -0.328 1.395 sum 6.276 2.188 18.623 19.774 Atomic orbital electron populations 1.22718 0.97015 1.01210 1.01845 1.18230 0.92472 0.91604 0.92441 1.22730 1.02210 0.97836 1.00267 1.20675 1.34750 1.11230 0.87443 0.90247 1.24966 0.94805 0.97166 0.95745 1.69898 1.47906 1.37016 0.98132 0.87526 0.80111 0.85229 0.77103 1.21064 1.22688 1.16661 1.30585 1.12054 1.12912 1.15560 1.05703 0.74528 0.75268 0.75739 1.93569 1.28682 1.86797 1.86250 1.93543 1.75236 1.41331 1.84576 1.55412 1.10768 1.70529 1.48121 1.19497 0.80176 0.87449 1.00508 1.22791 0.89252 0.94153 0.88911 1.68047 1.32086 1.01249 1.18082 1.23109 0.90185 0.94009 0.94029 1.22855 0.99571 1.01861 1.00809 1.23140 0.97948 0.87906 0.92851 1.68032 1.08101 1.25190 1.20631 1.23103 1.02811 0.93913 0.95795 1.22837 1.02654 0.96366 0.95578 1.23745 1.03438 0.93499 0.98451 0.94126 0.91555 0.92492 0.91897 0.92929 0.94082 0.92477 0.85216 0.85422 0.74773 0.81973 0.83836 0.81541 0.89016 0.90030 0.89427 0.90478 0.89175 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 6.71 37.15 0.25 -3.68 16 2 C 0.06 1.29 0.52 -155.66 -0.08 1.21 16 3 C -0.17 -4.01 7.23 37.16 0.27 -3.74 16 4 C -0.50 -13.60 8.62 -34.44 -0.30 -13.90 16 5 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 6 C 0.08 2.15 5.37 -17.82 -0.10 2.05 16 7 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 8 Si 0.87 21.71 22.75 -169.99 -3.87 17.84 16 9 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.24 -5.67 4.43 56.52 0.25 -5.42 16 12 C -0.58 -11.06 3.36 37.16 0.12 -10.94 16 13 S 2.59 47.54 4.46 -107.50 -0.48 47.06 16 14 O -0.96 -19.79 15.61 -57.54 -0.90 -20.69 16 15 O -0.96 -19.44 13.03 -57.54 -0.75 -20.19 16 16 N -1.09 -15.33 5.49 0.26 0.00 -15.33 16 17 C 0.22 2.83 1.23 -132.16 -0.16 2.67 16 18 C 0.32 4.74 5.04 -157.20 -0.79 3.95 16 19 N -0.48 -7.30 9.09 -10.73 -0.10 -7.40 16 20 C 0.15 1.90 11.31 -17.20 -0.19 1.70 16 21 C -0.23 -2.41 10.17 -39.32 -0.40 -2.81 16 22 C 0.15 1.73 11.30 -17.20 -0.19 1.53 16 23 N -0.51 -7.20 8.93 -10.73 -0.10 -7.30 16 24 C -0.12 -1.13 7.33 -25.92 -0.19 -1.32 16 25 C -0.14 -1.26 7.99 -25.92 -0.21 -1.47 16 26 C -0.15 -1.83 6.58 -25.92 -0.17 -2.00 16 27 H 0.04 0.90 6.17 -51.93 -0.32 0.58 16 28 H 0.07 1.56 4.24 -51.93 -0.22 1.34 16 29 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.05 1.25 2.36 -51.93 -0.12 1.12 16 32 H 0.04 0.89 5.69 -51.93 -0.30 0.60 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.13 2.36 6.54 -51.92 -0.34 2.02 16 35 H 0.13 2.19 7.97 -51.92 -0.41 1.78 16 36 H 0.42 4.81 8.72 -34.47 -0.30 4.51 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 41 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.17 4.94 -51.93 -0.26 0.91 16 45 H 0.11 1.34 7.24 -51.93 -0.38 0.97 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -35.72 347.78 -8.46 -44.18 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.15 Total: 9.29 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -2.14 Total: -26.75 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.58 Total: -55.98 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.65 Total: -40.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -3.87 Total: 17.84 kcal Atomic # 16 Polarization: 47.54 SS G_CDS: -0.48 Total: 47.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.72 -8.46 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882682556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.510 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds