Wall clock time and date at job start Wed Apr 1 2020 00:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47524 * 2 1 4 4 C 1.50704 * 109.47179 * 239.99855 * 2 1 3 5 5 H 1.07997 * 120.00585 * 242.62039 * 4 2 1 6 6 C 1.37878 * 119.99910 * 62.61451 * 4 2 1 7 7 N 1.31515 * 120.00141 * 188.89307 * 6 4 2 8 8 Si 1.86803 * 119.99793 * 8.89342 * 6 4 2 9 9 H 1.48501 * 109.47226 * 91.96484 * 8 6 4 10 10 H 1.48503 * 109.47342 * 211.96300 * 8 6 4 11 11 H 1.48495 * 109.47162 * 331.96590 * 8 6 4 12 12 C 1.53004 * 109.47069 * 120.00290 * 2 1 3 13 13 S 1.81395 * 109.47063 * 299.99622 * 12 2 1 14 14 O 1.42108 * 110.54281 * 63.66976 * 13 12 2 15 15 O 1.42093 * 110.54287 * 286.91881 * 13 12 2 16 16 N 1.65600 * 104.45076 * 175.29239 * 13 12 2 17 17 C 1.46500 * 119.99920 * 63.34799 * 16 13 12 18 18 C 1.50698 * 112.84666 * 53.42374 * 17 16 13 19 19 N 1.31790 * 119.12496 * 46.92076 * 18 17 16 20 20 C 1.32343 * 120.81881 * 180.02562 * 19 18 17 21 21 C 1.38594 * 119.10285 * 359.97438 * 20 19 18 22 22 C 1.38592 * 118.39935 * 0.02562 * 21 20 19 23 23 N 1.31796 * 119.11897 * 226.91980 * 18 17 16 24 24 C 1.53783 * 113.68841 * 184.68910 * 17 16 13 25 25 C 1.53779 * 87.08112 * 89.13123 * 24 17 16 26 26 C 1.53777 * 113.61536 * 282.22714 * 17 16 13 27 27 H 1.09002 * 109.47392 * 312.73086 * 1 2 3 28 28 H 1.09002 * 109.46992 * 72.72875 * 1 2 3 29 29 H 1.08999 * 109.47705 * 192.73104 * 1 2 3 30 30 H 1.08997 * 109.47208 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47091 * 299.99978 * 3 2 1 32 32 H 1.09000 * 109.46560 * 60.00162 * 3 2 1 33 33 H 0.97005 * 119.99731 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46975 * 179.97438 * 12 2 1 35 35 H 1.09000 * 109.46969 * 59.99630 * 12 2 1 36 36 H 0.97004 * 120.00084 * 243.35146 * 16 13 12 37 37 H 1.07999 * 120.44536 * 180.02562 * 20 19 18 38 38 H 1.07999 * 120.79721 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.44445 * 179.97438 * 22 21 20 40 40 H 1.09002 * 113.60865 * 203.67514 * 24 17 16 41 41 H 1.08999 * 113.61755 * 334.57797 * 24 17 16 42 42 H 1.09004 * 113.61350 * 270.88183 * 25 24 17 43 43 H 1.08999 * 113.61919 * 139.97755 * 25 24 17 44 44 H 1.09001 * 113.61697 * 25.34577 * 26 17 16 45 45 H 1.08997 * 113.61728 * 156.25417 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6178 -1.6126 -1.1320 6 6 1.7443 -0.2088 -2.4820 7 7 2.0283 -0.9146 -3.5548 8 14 0.9505 1.4735 -2.6540 9 1 2.0070 2.5066 -2.8015 10 1 0.0741 1.4872 -3.8527 11 1 0.1395 1.7641 -1.4445 12 6 2.0399 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0171 0.0738 2.7968 15 8 2.1261 1.3619 2.9139 16 7 1.9435 -0.8129 3.9905 17 6 3.3758 -1.0022 4.2333 18 6 4.1263 0.2993 4.3510 19 7 3.6367 1.2553 5.1148 20 6 4.2677 2.4116 5.2420 21 6 5.4578 2.6087 4.5595 22 6 5.9408 1.5801 3.7661 23 7 5.2548 0.4512 3.6875 24 6 3.6845 -1.9960 5.3656 25 6 3.6660 -3.1000 4.2953 26 6 4.0351 -2.0091 3.2761 27 1 -0.3634 0.6973 0.7549 28 1 -0.3633 0.3051 -0.9813 29 1 -0.3634 -1.0024 0.2265 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.8260 -0.5615 -4.4353 34 1 3.1300 -0.7217 1.2490 35 1 1.6765 -1.7490 1.2492 36 1 1.2928 -1.2422 4.5678 37 1 3.8613 3.1907 5.8698 38 1 5.9952 3.5417 4.6432 39 1 6.8648 1.6983 3.2195 40 1 4.6629 -1.8471 5.8224 41 1 2.8829 -2.0852 6.0988 42 1 2.6794 -3.5338 4.1324 43 1 4.4432 -3.8522 4.4304 44 1 3.5166 -2.1090 2.3225 45 1 5.1093 -1.8639 3.1618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882682556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:43 Heat of formation + Delta-G solvation = 4.110990 kcal Electronic energy + Delta-G solvation = -29700.462443 eV Core-core repulsion = 25846.483794 eV Total energy + Delta-G solvation = -3853.978649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.13721 -39.98627 -38.59680 -38.13405 -36.97337 -34.61894 -34.07871 -33.70947 -32.77574 -29.30736 -28.22721 -27.15337 -27.00002 -26.69948 -25.21315 -23.58988 -21.71147 -20.83689 -20.21645 -19.00769 -18.37189 -18.20686 -18.14549 -17.41722 -17.17016 -16.79618 -16.38617 -16.15842 -15.68753 -15.50516 -15.17363 -15.06708 -14.85368 -14.74023 -14.34503 -14.24127 -14.17985 -13.68118 -13.32107 -13.27299 -13.09149 -12.91438 -12.78749 -12.74095 -12.60108 -12.22878 -12.05672 -11.94392 -11.91565 -11.74623 -11.67705 -11.61259 -11.34952 -10.93499 -10.74199 -10.61195 -10.47161 -10.25014 -10.07378 -8.35217 -6.36901 -0.73113 0.01979 0.31271 1.25653 1.32358 1.38778 1.71050 2.26703 2.65851 2.76979 2.93113 2.99181 3.19540 3.31661 3.55412 3.62038 3.73281 3.86342 3.87129 3.95897 4.11253 4.17874 4.23715 4.32344 4.40228 4.46641 4.52090 4.64507 4.67839 4.73694 4.81842 4.86151 4.88390 4.95286 5.05251 5.10635 5.12222 5.15425 5.30888 5.47820 5.52847 5.56098 5.58136 6.04800 6.18860 6.24862 6.66527 7.23649 7.27990 8.80653 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014232 B = 0.004802 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.947305 B = 5829.502384 C = 6231.345718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.048 3.952 3 C -0.176 4.176 4 C -0.497 4.497 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.937 5.937 8 Si 0.911 3.089 9 H -0.279 1.279 10 H -0.301 1.301 11 H -0.218 1.218 12 C -0.583 4.583 13 S 2.612 3.388 14 O -0.985 6.985 15 O -0.975 6.975 16 N -1.078 6.078 17 C 0.200 3.800 18 C 0.297 3.703 19 N -0.510 5.510 20 C 0.131 3.869 21 C -0.218 4.218 22 C 0.130 3.870 23 N -0.526 5.526 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.160 4.160 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.430 0.570 37 H 0.188 0.812 38 H 0.182 0.818 39 H 0.196 0.804 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 1.559 21.392 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.045 3.955 3 C -0.232 4.232 4 C -0.536 4.536 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.577 5.577 8 Si 0.740 3.260 9 H -0.207 1.207 10 H -0.229 1.229 11 H -0.142 1.142 12 C -0.714 4.714 13 S 2.708 3.292 14 O -0.976 6.976 15 O -0.964 6.964 16 N -0.837 5.837 17 C 0.108 3.892 18 C 0.027 3.973 19 N -0.224 5.224 20 C -0.035 4.035 21 C -0.239 4.239 22 C -0.036 4.036 23 N -0.241 5.241 24 C -0.144 4.144 25 C -0.163 4.163 26 C -0.199 4.199 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.268 0.732 37 H 0.205 0.795 38 H 0.199 0.801 39 H 0.213 0.787 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.366 1.603 21.147 22.143 hybrid contribution 0.230 1.086 -0.928 1.447 sum 6.596 2.689 20.219 21.437 Atomic orbital electron populations 1.22730 0.96657 1.02186 1.01646 1.18199 0.92794 0.91861 0.92640 1.22723 1.02397 0.97610 1.00507 1.20908 1.33344 1.10265 0.89061 0.93031 1.25648 0.95731 1.00241 0.95612 1.70014 1.50121 1.38837 0.98701 0.86818 0.79818 0.81566 0.77802 1.20653 1.22912 1.14179 1.30587 1.12455 1.13570 1.14828 1.04812 0.73615 0.75050 0.75714 1.93532 1.30160 1.87216 1.86657 1.93518 1.75467 1.42666 1.84794 1.54948 1.11953 1.70080 1.46754 1.19870 0.78986 0.87767 1.02605 1.23032 0.89914 0.94778 0.89569 1.68036 1.33153 1.02305 1.18863 1.23715 0.90997 0.93980 0.94759 1.23251 0.98802 1.02828 0.99020 1.23790 0.98837 0.87671 0.93269 1.68050 1.08445 1.26534 1.21050 1.23104 1.03609 0.92354 0.95378 1.22850 1.03685 0.96006 0.93766 1.23783 1.03111 0.94761 0.98269 0.93157 0.92384 0.91515 0.91785 0.93522 0.92847 0.92471 0.84776 0.83977 0.73238 0.79496 0.80094 0.78740 0.88382 0.88523 0.88557 0.88694 0.90643 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.84 6.71 71.98 0.48 -7.36 16 2 C 0.05 2.18 0.52 -52.93 -0.03 2.15 16 3 C -0.18 -7.90 7.23 71.98 0.52 -7.38 16 4 C -0.50 -27.21 8.62 25.60 0.22 -26.99 16 5 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 6 C 0.03 1.49 5.37 84.65 0.45 1.94 16 7 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 8 Si 0.91 44.37 22.75 68.60 1.56 45.93 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 11 H -0.22 -9.73 4.43 99.48 0.44 -9.29 16 12 C -0.58 -21.92 3.36 71.98 0.24 -21.67 16 13 S 2.61 92.38 4.46 -56.49 -0.25 92.13 16 14 O -0.99 -38.99 15.61 -127.65 -1.99 -40.98 16 15 O -0.98 -38.35 13.03 -127.65 -1.66 -40.02 16 16 N -1.08 -28.54 5.49 -153.09 -0.84 -29.38 16 17 C 0.20 4.93 1.23 3.38 0.00 4.94 16 18 C 0.30 8.47 5.04 138.75 0.70 9.17 16 19 N -0.51 -14.76 9.09 -187.85 -1.71 -16.46 16 20 C 0.13 2.99 11.31 84.70 0.96 3.95 16 21 C -0.22 -4.04 10.17 22.44 0.23 -3.81 16 22 C 0.13 2.79 11.30 84.70 0.96 3.75 16 23 N -0.53 -14.43 8.93 -187.85 -1.68 -16.10 16 24 C -0.10 -1.80 7.33 31.12 0.23 -1.57 16 25 C -0.13 -2.02 7.99 31.12 0.25 -1.77 16 26 C -0.16 -3.67 6.58 31.12 0.20 -3.47 16 27 H 0.05 2.14 6.17 -2.39 -0.01 2.13 16 28 H 0.06 2.66 4.24 -2.39 -0.01 2.65 16 29 H 0.07 2.80 8.08 -2.39 -0.02 2.78 16 30 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.05 2.13 2.36 -2.39 -0.01 2.13 16 32 H 0.05 2.25 5.69 -2.39 -0.01 2.24 16 33 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 34 H 0.13 4.88 6.54 -2.39 -0.02 4.87 16 35 H 0.14 4.80 7.97 -2.39 -0.02 4.78 16 36 H 0.43 9.06 8.72 -96.74 -0.84 8.22 16 37 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 38 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.20 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 41 H 0.10 1.36 8.11 -2.39 -0.02 1.34 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.92 4.94 -2.39 -0.01 1.91 16 45 H 0.11 2.57 7.24 -2.39 -0.02 2.55 16 Total: -1.00 -77.35 347.78 -0.93 -78.28 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.08 Total: 31.79 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 5.42 Total: -48.10 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -3.93 Total: -119.04 kcal Atomic # 8 Polarization: -77.34 SS G_CDS: -3.66 Total: -81.00 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.56 Total: 45.93 kcal Atomic # 16 Polarization: 92.38 SS G_CDS: -0.25 Total: 92.13 kcal Total: -77.35 -0.93 -78.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882682556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.390 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds