Wall clock time and date at job start Wed Apr 1 2020 01:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46920 * 186.79233 * 3 2 1 5 5 C 1.36930 * 120.00214 * 270.00223 * 4 3 2 6 6 H 1.07998 * 120.00226 * 142.52032 * 5 4 3 7 7 C 1.38816 * 119.99890 * 322.51574 * 5 4 3 8 8 N 1.31621 * 119.99904 * 158.18951 * 7 5 4 9 9 Si 1.86804 * 119.99960 * 338.18754 * 7 5 4 10 10 H 1.48498 * 109.46740 * 95.49967 * 9 7 5 11 11 H 1.48494 * 109.46739 * 215.49721 * 9 7 5 12 12 H 1.48498 * 109.46849 * 335.49769 * 9 7 5 13 13 C 1.46500 * 119.99878 * 90.00125 * 4 3 2 14 14 C 1.50698 * 109.47151 * 268.90124 * 13 4 3 15 15 C 1.35089 * 126.07803 * 98.54423 * 14 13 4 16 16 N 1.35045 * 107.98022 * 179.77538 * 15 14 13 17 17 H 0.96998 * 125.92454 * 180.24639 * 16 15 14 18 18 N 1.40064 * 108.13675 * 0.22628 * 16 15 14 19 19 C 1.31623 * 108.11433 * 359.97438 * 18 16 15 20 20 C 1.48414 * 126.04210 * 179.97438 * 19 18 16 21 21 C 1.39329 * 120.07174 * 137.73993 * 20 19 18 22 22 C 1.37954 * 119.99281 * 180.02562 * 21 20 19 23 23 C 1.38825 * 120.22785 * 359.97438 * 22 21 20 24 24 C 1.39085 * 120.00788 * 359.87617 * 23 22 21 25 25 C 1.38495 * 119.94046 * 359.94177 * 24 23 22 26 26 O 1.36137 * 120.77092 * 180.36484 * 24 23 22 27 27 C 1.43165 * 116.70513 * 342.54034 * 26 24 23 28 28 C 1.53468 * 108.22953 * 46.31547 * 27 26 24 29 29 O 1.36138 * 119.26963 * 179.64338 * 23 22 21 30 30 H 4.40645 * 5.51323 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46956 * 66.79815 * 3 2 1 32 32 H 1.08999 * 109.47378 * 306.79364 * 3 2 1 33 33 H 0.96999 * 119.99862 * 185.01899 * 8 7 5 34 34 H 1.08990 * 109.47522 * 148.89895 * 13 4 3 35 35 H 1.09005 * 109.47019 * 28.89851 * 13 4 3 36 36 H 1.08001 * 126.01096 * 0.03513 * 15 14 13 37 37 H 1.08001 * 120.00613 * 0.06708 * 21 20 19 38 38 H 1.07997 * 119.88784 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.01794 * 180.16013 * 25 24 23 40 40 H 1.09009 * 109.70875 * 165.99328 * 27 26 24 41 41 H 1.09001 * 109.71527 * 286.62450 * 27 26 24 42 42 H 1.09002 * 109.70745 * 59.93749 * 28 27 26 43 43 H 1.08997 * 109.70999 * 180.56292 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3724 0.1634 5 6 3.3616 2.1538 -0.9378 6 1 3.1288 3.2080 -0.9094 7 6 3.8918 1.5909 -2.0906 8 7 3.7219 2.1865 -3.2520 9 14 4.8466 -0.0117 -1.9935 10 1 3.9387 -1.1477 -2.2944 11 1 5.9546 0.0116 -2.9819 12 1 5.4054 -0.1730 -0.6272 13 6 3.3777 1.9082 1.5049 14 6 2.1296 2.5852 2.0100 15 6 1.2163 2.0473 2.8475 16 7 0.2536 2.9697 3.0624 17 1 -0.5270 2.8567 3.6270 18 7 0.5783 4.1179 2.3288 19 6 1.7069 3.8903 1.6908 20 6 2.4115 4.8420 0.7962 21 6 3.7971 4.9701 0.8655 22 6 4.4503 5.8557 0.0335 23 6 3.7318 6.6210 -0.8749 24 6 2.3487 6.4947 -0.9503 25 6 1.6896 5.6041 -0.1194 26 8 1.6295 7.2321 -1.8404 27 6 2.2781 8.3806 -2.3971 28 6 3.6909 7.9696 -2.8335 29 8 4.3954 7.4941 -1.6815 30 1 -1.0502 -0.0005 0.0001 31 1 3.0095 -0.4040 -0.9445 32 1 3.0097 -0.6147 0.8229 33 1 4.0286 1.7578 -4.0663 34 1 4.1923 2.6312 1.4648 35 1 3.6471 1.0941 2.1778 36 1 1.2520 1.0557 3.2739 37 1 4.3599 4.3757 1.5701 38 1 5.5245 5.9533 0.0884 39 1 0.6160 5.5031 -0.1787 40 1 1.7161 8.7379 -3.2601 41 1 2.3397 9.1682 -1.6460 42 1 3.6292 7.1775 -3.5797 43 1 4.2111 8.8307 -3.2528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:32 Heat of formation + Delta-G solvation = 126.356646 kcal Electronic energy + Delta-G solvation = -29884.740443 eV Core-core repulsion = 25900.618812 eV Total energy + Delta-G solvation = -3984.121631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.93403 -40.55991 -37.30872 -36.85997 -36.19035 -32.43965 -32.05890 -31.62433 -30.60279 -29.96435 -29.54255 -27.84759 -26.48742 -25.42492 -24.50775 -22.85349 -21.66899 -21.24197 -20.05623 -19.23469 -18.09788 -17.98821 -17.34689 -16.86411 -16.59102 -16.29813 -15.37336 -15.05849 -14.81027 -14.41834 -14.34827 -14.05085 -13.90358 -13.73198 -13.48662 -13.36474 -12.97326 -12.79135 -12.71432 -12.63502 -12.23491 -11.85054 -11.56823 -11.28849 -11.06593 -10.86039 -10.80210 -10.51976 -10.31911 -10.15743 -10.10038 -9.78240 -9.29435 -9.14496 -9.12352 -8.58268 -8.09014 -7.95519 -7.38959 -6.86504 -5.86506 -3.33510 1.56020 1.88647 2.41437 3.16068 3.23949 3.31295 3.46492 3.48565 3.50156 3.55294 3.69403 3.74056 4.29470 4.48319 4.55568 4.95963 5.00350 5.05457 5.07435 5.19257 5.25709 5.38039 5.39040 5.50513 5.65017 5.67791 5.74561 5.84161 5.86372 5.95310 6.19824 6.25418 6.37563 6.42867 6.50755 6.59048 6.63050 6.77068 6.83108 6.95848 7.06761 7.13534 7.29149 7.68130 7.82446 8.07489 8.12925 8.49312 8.55669 9.05608 9.78070 10.14288 11.25592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.005489 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.201258 B = 5099.684052 C = 6815.402961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.150 4.150 3 C 0.225 3.775 4 N -0.585 5.585 5 C -0.266 4.266 6 H 0.093 0.907 7 C 0.038 3.962 8 N -0.896 5.896 9 Si 0.869 3.131 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.265 1.265 13 C 0.210 3.790 14 C -0.211 4.211 15 C 0.052 3.948 16 N -0.484 5.484 17 H 0.433 0.567 18 N -0.296 5.296 19 C 0.140 3.860 20 C 0.010 3.990 21 C -0.075 4.075 22 C -0.107 4.107 23 C 0.057 3.943 24 C 0.051 3.949 25 C -0.081 4.081 26 O -0.308 6.308 27 C 0.023 3.977 28 C 0.020 3.980 29 O -0.310 6.310 30 H 0.199 0.801 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.166 0.834 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 6.549 8.758 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.153 4.153 3 C 0.100 3.900 4 N -0.304 5.304 5 C -0.395 4.395 6 H 0.111 0.889 7 C -0.163 4.163 8 N -0.537 5.537 9 Si 0.700 3.300 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.190 1.190 13 C 0.084 3.916 14 C -0.224 4.224 15 C -0.094 4.094 16 N -0.192 5.192 17 H 0.275 0.725 18 N -0.119 5.119 19 C -0.026 4.026 20 C 0.008 3.992 21 C -0.094 4.094 22 C -0.125 4.125 23 C 0.012 3.988 24 C 0.006 3.994 25 C -0.101 4.101 26 O -0.223 6.223 27 C -0.053 4.053 28 C -0.055 4.055 29 O -0.224 6.224 30 H 0.216 0.784 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.184 0.816 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.489 7.457 8.763 11.772 hybrid contribution 0.066 -1.677 -0.460 1.740 sum -2.423 5.780 8.303 10.403 Atomic orbital electron populations 1.24525 0.95559 1.03863 1.04467 1.24936 0.95833 0.97326 0.97194 1.18538 0.82599 0.88584 1.00267 1.44123 1.73275 1.10792 1.02232 1.18987 1.36022 0.94695 0.89770 0.88913 1.25473 0.97884 0.97194 0.95741 1.69812 1.47584 1.39035 0.97224 0.87044 0.80641 0.84446 0.77900 1.21620 1.22904 1.18967 1.19410 0.90963 0.95679 0.85585 1.21178 1.03344 0.94636 1.03257 1.22159 0.90610 0.95557 1.01114 1.46053 1.21891 1.10984 1.40309 0.72479 1.77456 1.16270 1.06019 1.12182 1.20377 0.92479 0.93706 0.96038 1.17221 0.92118 0.94796 0.95063 1.20774 0.92670 0.96830 0.99147 1.20168 0.99799 0.95929 0.96629 1.18855 0.89324 0.95176 0.95411 1.18576 0.88914 0.97282 0.94584 1.20220 1.00035 0.95789 0.94048 1.86309 1.40563 1.38652 1.56731 1.23533 0.94543 0.87403 0.99818 1.23578 0.93153 1.01188 0.87624 1.86250 1.41449 1.58907 1.35842 0.78404 0.90732 0.91821 0.92868 0.91006 0.93508 0.81649 0.84757 0.84890 0.85318 0.86617 0.91043 0.90118 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.15 -3.19 13.68 -37.12 -0.51 -3.70 16 3 C 0.23 4.83 5.02 -6.82 -0.03 4.80 16 4 N -0.58 -13.20 2.03 -177.95 -0.36 -13.56 16 5 C -0.27 -7.11 9.92 -15.06 -0.15 -7.26 16 6 H 0.09 2.67 5.46 -52.49 -0.29 2.38 16 7 C 0.04 1.06 5.31 -17.43 -0.09 0.97 16 8 N -0.90 -27.10 13.96 55.49 0.77 -26.32 16 9 Si 0.87 21.37 25.00 -169.99 -4.25 17.12 16 10 H -0.29 -6.99 6.68 56.52 0.38 -6.61 16 11 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.21 3.91 5.81 -5.19 -0.03 3.88 16 14 C -0.21 -3.79 5.67 -104.76 -0.59 -4.38 16 15 C 0.05 0.78 11.88 -17.26 -0.21 0.57 16 16 N -0.48 -7.03 7.35 30.42 0.22 -6.80 16 17 H 0.43 4.57 8.96 -182.63 -1.64 2.94 16 18 N -0.30 -5.39 12.74 33.43 0.43 -4.97 16 19 C 0.14 2.69 6.67 -82.78 -0.55 2.14 16 20 C 0.01 0.20 4.25 -104.91 -0.45 -0.24 16 21 C -0.07 -1.35 7.96 -39.28 -0.31 -1.66 16 22 C -0.11 -1.91 9.95 -39.47 -0.39 -2.30 16 23 C 0.06 1.08 6.50 -39.05 -0.25 0.83 16 24 C 0.05 0.99 6.49 -39.17 -0.25 0.74 16 25 C -0.08 -1.64 9.69 -39.10 -0.38 -2.02 16 26 O -0.31 -5.51 10.41 -32.96 -0.34 -5.85 16 27 C 0.02 0.29 7.26 37.40 0.27 0.56 16 28 C 0.02 0.27 7.26 37.40 0.27 0.54 16 29 O -0.31 -5.26 10.41 -32.97 -0.34 -5.60 16 30 H 0.20 3.14 7.80 -54.08 -0.42 2.72 16 31 H 0.08 1.76 3.22 -51.93 -0.17 1.59 16 32 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 33 H 0.26 7.55 8.32 -40.82 -0.34 7.21 16 34 H 0.07 1.32 5.30 -51.93 -0.28 1.04 16 35 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 36 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.13 2.16 6.16 -52.49 -0.32 1.83 16 38 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.13 2.62 8.06 -52.49 -0.42 2.19 16 40 H 0.12 1.08 8.14 -51.92 -0.42 0.66 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -35.08 363.07 -7.54 -42.62 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.05 Total: 9.02 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -3.09 Total: -11.14 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 1.06 Total: -51.65 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.69 Total: -11.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.25 Total: 17.12 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.08 -7.54 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.977 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds