Wall clock time and date at job start Wed Apr 1 2020 01:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46920 * 186.79233 * 3 2 1 5 5 C 1.36930 * 120.00214 * 270.00223 * 4 3 2 6 6 H 1.07998 * 120.00226 * 142.52032 * 5 4 3 7 7 C 1.38816 * 119.99890 * 322.51574 * 5 4 3 8 8 N 1.31621 * 119.99904 * 158.18951 * 7 5 4 9 9 Si 1.86804 * 119.99960 * 338.18754 * 7 5 4 10 10 H 1.48498 * 109.46740 * 95.49967 * 9 7 5 11 11 H 1.48494 * 109.46739 * 215.49721 * 9 7 5 12 12 H 1.48498 * 109.46849 * 335.49769 * 9 7 5 13 13 C 1.46500 * 119.99878 * 90.00125 * 4 3 2 14 14 C 1.50698 * 109.47151 * 268.90124 * 13 4 3 15 15 C 1.35089 * 126.07803 * 98.54423 * 14 13 4 16 16 N 1.35045 * 107.98022 * 179.77538 * 15 14 13 17 17 H 0.96998 * 125.92454 * 180.24639 * 16 15 14 18 18 N 1.40064 * 108.13675 * 0.22628 * 16 15 14 19 19 C 1.31623 * 108.11433 * 359.97438 * 18 16 15 20 20 C 1.48414 * 126.04210 * 179.97438 * 19 18 16 21 21 C 1.39329 * 120.07174 * 137.73993 * 20 19 18 22 22 C 1.37954 * 119.99281 * 180.02562 * 21 20 19 23 23 C 1.38825 * 120.22785 * 359.97438 * 22 21 20 24 24 C 1.39085 * 120.00788 * 359.87617 * 23 22 21 25 25 C 1.38495 * 119.94046 * 359.94177 * 24 23 22 26 26 O 1.36137 * 120.77092 * 180.36484 * 24 23 22 27 27 C 1.43165 * 116.70513 * 342.54034 * 26 24 23 28 28 C 1.53468 * 108.22953 * 46.31547 * 27 26 24 29 29 O 1.36138 * 119.26963 * 179.64338 * 23 22 21 30 30 H 4.40645 * 5.51323 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.46956 * 66.79815 * 3 2 1 32 32 H 1.08999 * 109.47378 * 306.79364 * 3 2 1 33 33 H 0.96999 * 119.99862 * 185.01899 * 8 7 5 34 34 H 1.08990 * 109.47522 * 148.89895 * 13 4 3 35 35 H 1.09005 * 109.47019 * 28.89851 * 13 4 3 36 36 H 1.08001 * 126.01096 * 0.03513 * 15 14 13 37 37 H 1.08001 * 120.00613 * 0.06708 * 21 20 19 38 38 H 1.07997 * 119.88784 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.01794 * 180.16013 * 25 24 23 40 40 H 1.09009 * 109.70875 * 165.99328 * 27 26 24 41 41 H 1.09001 * 109.71527 * 286.62450 * 27 26 24 42 42 H 1.09002 * 109.70745 * 59.93749 * 28 27 26 43 43 H 1.08997 * 109.70999 * 180.56292 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3724 0.1634 5 6 3.3616 2.1538 -0.9378 6 1 3.1288 3.2080 -0.9094 7 6 3.8918 1.5909 -2.0906 8 7 3.7219 2.1865 -3.2520 9 14 4.8466 -0.0117 -1.9935 10 1 3.9387 -1.1477 -2.2944 11 1 5.9546 0.0116 -2.9819 12 1 5.4054 -0.1730 -0.6272 13 6 3.3777 1.9082 1.5049 14 6 2.1296 2.5852 2.0100 15 6 1.2163 2.0473 2.8475 16 7 0.2536 2.9697 3.0624 17 1 -0.5270 2.8567 3.6270 18 7 0.5783 4.1179 2.3288 19 6 1.7069 3.8903 1.6908 20 6 2.4115 4.8420 0.7962 21 6 3.7971 4.9701 0.8655 22 6 4.4503 5.8557 0.0335 23 6 3.7318 6.6210 -0.8749 24 6 2.3487 6.4947 -0.9503 25 6 1.6896 5.6041 -0.1194 26 8 1.6295 7.2321 -1.8404 27 6 2.2781 8.3806 -2.3971 28 6 3.6909 7.9696 -2.8335 29 8 4.3954 7.4941 -1.6815 30 1 -1.0502 -0.0005 0.0001 31 1 3.0095 -0.4040 -0.9445 32 1 3.0097 -0.6147 0.8229 33 1 4.0286 1.7578 -4.0663 34 1 4.1923 2.6312 1.4648 35 1 3.6471 1.0941 2.1778 36 1 1.2520 1.0557 3.2739 37 1 4.3599 4.3757 1.5701 38 1 5.5245 5.9533 0.0884 39 1 0.6160 5.5031 -0.1787 40 1 1.7161 8.7379 -3.2601 41 1 2.3397 9.1682 -1.6460 42 1 3.6292 7.1775 -3.5797 43 1 4.2111 8.8307 -3.2528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897163473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:30 Heat of formation + Delta-G solvation = 102.936891 kcal Electronic energy + Delta-G solvation = -29885.756000 eV Core-core repulsion = 25900.618812 eV Total energy + Delta-G solvation = -3985.137187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.24934 -41.84727 -38.67482 -38.17390 -37.86435 -33.97003 -33.81628 -33.12919 -31.91572 -31.44700 -30.88734 -29.17089 -28.08273 -27.13190 -25.76193 -24.26044 -23.35384 -22.55647 -21.39220 -20.56276 -19.67779 -19.40634 -18.62209 -18.22313 -18.07826 -17.81500 -17.17793 -16.39366 -16.11812 -15.92121 -15.65450 -15.36178 -15.32254 -15.22125 -14.84264 -14.77749 -14.69220 -14.47186 -14.08364 -14.06809 -13.71973 -13.35911 -12.97309 -12.78293 -12.61641 -12.49199 -12.23234 -11.96494 -11.93514 -11.73397 -11.42165 -11.36129 -10.98504 -10.79291 -10.54342 -10.43863 -9.51456 -9.34841 -8.84175 -8.63370 -7.96609 -5.40596 0.13499 0.43399 1.15066 1.37453 1.49479 1.59300 1.80514 2.08119 2.10639 2.15248 2.23361 2.34151 2.54490 2.86957 3.27083 3.36142 3.66724 3.72478 3.78454 3.83108 3.98088 4.09462 4.13340 4.27477 4.27850 4.44074 4.53269 4.56779 4.60831 4.64790 4.67947 4.77052 4.91225 5.01162 5.10107 5.18729 5.20496 5.34618 5.39177 5.56518 5.68130 5.77364 5.96599 6.11126 6.47066 6.50795 6.59887 6.82643 6.96452 7.13562 7.78986 8.18407 9.19007 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.005489 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.201258 B = 5099.684052 C = 6815.402961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.191 4.191 3 C 0.222 3.778 4 N -0.594 5.594 5 C -0.238 4.238 6 H 0.063 0.937 7 C -0.027 4.027 8 N -0.953 5.953 9 Si 0.931 3.069 10 H -0.286 1.286 11 H -0.318 1.318 12 H -0.237 1.237 13 C 0.208 3.792 14 C -0.238 4.238 15 C 0.078 3.922 16 N -0.466 5.466 17 H 0.451 0.549 18 N -0.323 5.323 19 C 0.118 3.882 20 C 0.001 3.999 21 C -0.079 4.079 22 C -0.114 4.114 23 C 0.044 3.956 24 C 0.041 3.959 25 C -0.109 4.109 26 O -0.331 6.331 27 C 0.017 3.983 28 C 0.014 3.986 29 O -0.318 6.318 30 H 0.230 0.770 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.255 0.745 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.208 0.792 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 5.289 11.026 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.193 4.193 3 C 0.097 3.903 4 N -0.314 5.314 5 C -0.368 4.368 6 H 0.081 0.919 7 C -0.222 4.222 8 N -0.599 5.599 9 Si 0.761 3.239 10 H -0.214 1.214 11 H -0.248 1.248 12 H -0.160 1.160 13 C 0.082 3.918 14 C -0.251 4.251 15 C -0.070 4.070 16 N -0.176 5.176 17 H 0.297 0.703 18 N -0.148 5.148 19 C -0.047 4.047 20 C -0.001 4.001 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.002 4.002 24 C -0.004 4.004 25 C -0.129 4.129 26 O -0.247 6.247 27 C -0.058 4.058 28 C -0.061 4.061 29 O -0.233 6.233 30 H 0.246 0.754 31 H 0.069 0.931 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.224 0.776 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.132 0.868 40 H 0.169 0.831 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.634 6.199 11.101 12.984 hybrid contribution -0.073 -1.199 -1.103 1.630 sum -2.707 5.000 9.998 11.502 Atomic orbital electron populations 1.25299 0.96452 1.02008 1.02733 1.25075 0.96436 0.98988 0.98847 1.18577 0.83046 0.88049 1.00638 1.44233 1.73684 1.10911 1.02605 1.18910 1.33146 0.94003 0.90767 0.91950 1.26076 0.99615 1.01045 0.95430 1.69981 1.50535 1.41402 0.97947 0.86027 0.78581 0.80651 0.78625 1.21378 1.24765 1.15981 1.19568 0.91305 0.96776 0.84102 1.21134 1.04300 0.94421 1.05258 1.22669 0.88916 0.96438 0.99014 1.46083 1.22284 1.09915 1.39283 0.70254 1.77399 1.16311 1.07866 1.13196 1.20486 0.93096 0.94517 0.96570 1.17468 0.92861 0.94776 0.95012 1.20998 0.92353 0.96990 0.99490 1.20534 1.00896 0.95551 0.96213 1.19044 0.89242 0.95806 0.96066 1.18712 0.89494 0.97479 0.94714 1.20295 0.99557 0.97403 0.95680 1.86255 1.41750 1.40160 1.56519 1.23964 0.94441 0.86039 1.01353 1.23916 0.94135 1.02031 0.86032 1.86226 1.42083 1.58460 1.36576 0.75358 0.93139 0.87781 0.93615 0.91486 0.89708 0.77553 0.82986 0.82856 0.86804 0.83096 0.89325 0.92166 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.83 19.25 74.32 1.43 -7.40 16 2 C -0.19 -7.63 13.68 31.13 0.43 -7.20 16 3 C 0.22 8.90 5.02 84.58 0.42 9.33 16 4 N -0.59 -25.82 2.03 -716.91 -1.45 -27.27 16 5 C -0.24 -12.86 9.92 84.04 0.83 -12.02 16 6 H 0.06 3.73 5.46 -2.91 -0.02 3.72 16 7 C -0.03 -1.52 5.31 84.86 0.45 -1.07 16 8 N -0.95 -60.24 13.96 21.65 0.30 -59.94 16 9 Si 0.93 44.60 25.00 68.60 1.72 46.31 16 10 H -0.29 -13.38 6.68 99.48 0.66 -12.72 16 11 H -0.32 -15.93 7.11 99.48 0.71 -15.22 16 12 H -0.24 -10.08 7.11 99.48 0.71 -9.37 16 13 C 0.21 7.19 5.81 85.63 0.50 7.69 16 14 C -0.24 -8.03 5.67 -19.95 -0.11 -8.15 16 15 C 0.08 2.02 11.88 83.47 0.99 3.01 16 16 N -0.47 -12.22 7.35 -57.67 -0.42 -12.65 16 17 H 0.45 8.05 8.96 -213.35 -1.91 6.14 16 18 N -0.32 -11.58 12.74 -48.16 -0.61 -12.19 16 19 C 0.12 4.51 6.67 42.53 0.28 4.80 16 20 C 0.00 0.05 4.25 -20.05 -0.09 -0.04 16 21 C -0.08 -2.93 7.96 22.46 0.18 -2.75 16 22 C -0.11 -4.18 9.95 22.34 0.22 -3.96 16 23 C 0.04 1.71 6.50 22.61 0.15 1.86 16 24 C 0.04 1.68 6.49 22.53 0.15 1.83 16 25 C -0.11 -4.73 9.69 22.58 0.22 -4.51 16 26 O -0.33 -12.36 10.41 -82.88 -0.86 -13.23 16 27 C 0.02 0.41 7.26 72.14 0.52 0.93 16 28 C 0.01 0.36 7.26 72.14 0.52 0.88 16 29 O -0.32 -10.94 10.41 -82.90 -0.86 -11.80 16 30 H 0.23 6.36 7.80 -4.41 -0.03 6.33 16 31 H 0.05 2.29 3.22 -2.39 -0.01 2.28 16 32 H 0.10 3.27 7.88 -2.39 -0.02 3.26 16 33 H 0.25 15.50 8.32 -92.71 -0.77 14.73 16 34 H 0.07 2.35 5.30 -2.39 -0.01 2.34 16 35 H 0.08 2.29 7.88 -2.38 -0.02 2.27 16 36 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 37 H 0.15 4.89 6.16 -2.91 -0.02 4.87 16 38 H 0.15 4.82 8.06 -2.91 -0.02 4.79 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.15 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.16 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -80.69 363.07 4.02 -76.67 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.88 Total: 30.88 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 7.10 Total: -16.78 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -2.19 Total: -112.05 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.73 Total: -25.02 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.72 Total: 46.31 kcal Total: -80.69 4.02 -76.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.605 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds