Wall clock time and date at job start Tue Mar 31 2020 22:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 C 1.50693 * 109.47055 * 120.00025 * 2 1 3 5 5 N 1.30940 * 122.90972 * 305.51636 * 4 2 1 6 6 C 1.29430 * 117.36872 * 180.02562 * 5 4 2 7 7 S 1.70947 * 110.38831 * 359.72394 * 6 5 4 8 8 C 1.35662 * 122.90390 * 125.51072 * 4 2 1 9 9 C 1.46683 * 126.12999 * 0.02562 * 8 4 2 10 10 O 1.21685 * 120.00149 * 354.28438 * 9 8 4 11 11 N 1.34775 * 120.00238 * 174.28980 * 9 8 4 12 12 C 1.46502 * 120.00183 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47029 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.63874 * 56.69466 * 13 12 11 15 15 C 1.54320 * 110.72398 * 293.54434 * 13 12 11 16 16 N 1.47020 * 107.27222 * 219.44277 * 15 13 12 17 17 C 1.36939 * 125.64388 * 178.90307 * 16 15 13 18 18 H 1.08000 * 120.00555 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99752 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99912 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47305 * 89.99943 * 21 19 17 23 23 H 1.48506 * 109.46803 * 209.99954 * 21 19 17 24 24 H 1.48497 * 109.47077 * 329.99579 * 21 19 17 25 25 C 1.47419 * 108.70377 * 358.94465 * 16 15 13 26 26 C 1.54910 * 104.83340 * 24.12384 * 25 16 15 27 27 H 1.09003 * 111.00287 * 81.06481 * 26 25 16 28 28 O 1.42897 * 111.00504 * 204.91768 * 26 25 16 29 29 H 1.09004 * 109.46926 * 299.99974 * 1 2 3 30 30 H 1.09001 * 109.47015 * 59.99593 * 1 2 3 31 31 H 1.08995 * 109.47059 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46614 * 240.00433 * 2 1 3 33 33 H 1.08995 * 109.46558 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47067 * 300.00109 * 3 2 1 35 35 H 1.09000 * 109.46872 * 59.99980 * 3 2 1 36 36 H 1.08003 * 124.80386 * 179.97438 * 6 5 4 37 37 H 0.97002 * 120.00182 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.47049 * 60.00035 * 12 11 9 39 39 H 1.09002 * 109.47253 * 299.99828 * 12 11 9 40 40 H 1.09003 * 109.88006 * 338.86603 * 15 13 12 41 41 H 1.09002 * 109.87978 * 100.02648 * 15 13 12 42 42 H 0.96993 * 119.99690 * 179.97438 * 20 19 17 43 43 H 1.09006 * 110.36772 * 142.96738 * 25 16 15 44 44 H 1.09002 * 110.36285 * 265.17567 * 25 16 15 45 45 H 0.96702 * 113.99927 * 292.20117 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6674 -0.3773 2.4430 6 6 2.1657 -1.0603 3.4231 7 16 3.2112 -2.2761 2.8307 8 6 2.9018 -1.7505 1.1776 9 6 3.4774 -2.3357 -0.0381 10 8 3.1039 -1.9555 -1.1321 11 7 4.4197 -3.2945 0.0565 12 6 4.9942 -3.8794 -1.1577 13 6 6.0327 -4.9351 -0.7731 14 1 5.5872 -5.6974 -0.1340 15 6 7.2453 -4.2806 -0.0784 16 7 8.4507 -4.9662 -0.5668 17 6 9.7385 -4.6687 -0.2084 18 1 9.9334 -3.8693 0.4911 19 6 10.7933 -5.3948 -0.7442 20 7 10.5557 -6.3694 -1.5964 21 14 12.5499 -4.9895 -0.2548 22 1 12.9293 -5.7908 0.9366 23 1 13.4641 -5.3120 -1.3798 24 1 12.6529 -3.5437 0.0678 25 6 8.0435 -6.0262 -1.5069 26 6 6.6610 -5.5740 -2.0398 27 1 6.7709 -4.8371 -2.8355 28 8 5.8921 -6.6936 -2.4839 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9482 -0.8890 4.4670 37 1 4.7177 -3.5974 0.9285 38 1 5.4728 -3.0970 -1.7465 39 1 4.2034 -4.3447 -1.7461 40 1 7.2918 -3.2219 -0.3337 41 1 7.1628 -4.4003 1.0019 42 1 11.2928 -6.8764 -1.9710 43 1 8.7592 -6.1026 -2.3256 44 1 7.9582 -6.9810 -0.9882 45 1 6.2462 -7.1256 -3.2733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958472308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:44 Heat of formation + Delta-G solvation = -19.159688 kcal Electronic energy + Delta-G solvation = -27151.906000 eV Core-core repulsion = 23296.918259 eV Total energy + Delta-G solvation = -3854.987741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73980 -39.37597 -38.17893 -35.35057 -35.01392 -34.61646 -32.38851 -30.86291 -29.52436 -27.62937 -27.24548 -26.29286 -25.42218 -23.71796 -22.43599 -21.53324 -20.49961 -20.08827 -19.31194 -18.10520 -17.24420 -17.07036 -16.57365 -16.04225 -15.68808 -15.22050 -15.00201 -14.70859 -14.50323 -14.35646 -14.04790 -13.87889 -13.65242 -13.06418 -13.02848 -12.89459 -12.61475 -12.43445 -12.24885 -12.02221 -11.62107 -11.34207 -11.30389 -11.26021 -11.06838 -11.00347 -10.85863 -10.69032 -10.21665 -10.10914 -9.98449 -9.82528 -9.79182 -9.65952 -9.23430 -9.18938 -9.02938 -8.75206 -6.96206 -5.75942 -3.18684 -0.00843 0.91999 1.29532 2.22349 2.98450 3.04946 3.34292 3.39449 3.41344 3.85544 4.36740 4.55109 4.65914 4.69374 4.73162 4.98851 5.06385 5.12316 5.16467 5.29469 5.39337 5.43214 5.54766 5.61079 5.68263 5.73727 5.82272 5.87234 5.95028 5.97894 5.98924 6.11837 6.12955 6.22321 6.33864 6.42762 6.52503 6.74266 7.26219 7.30701 7.39807 7.49718 7.69756 8.02568 8.11254 8.24196 9.10157 9.70905 10.33716 11.28101 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.002609 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.785886 B =10729.766634 C =11420.986309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.137 4.137 4 C 0.153 3.847 5 N -0.469 5.469 6 C 0.033 3.967 7 S 0.164 5.836 8 C -0.292 4.292 9 C 0.596 3.404 10 O -0.523 6.523 11 N -0.716 5.716 12 C 0.134 3.866 13 C -0.106 4.106 14 H 0.087 0.913 15 C 0.140 3.860 16 N -0.601 5.601 17 C -0.225 4.225 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.917 3.083 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.128 3.872 26 C 0.082 3.918 27 H 0.062 0.938 28 O -0.569 6.569 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.205 0.795 37 H 0.399 0.601 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.024 0.976 42 H 0.253 0.747 43 H 0.110 0.890 44 H 0.023 0.977 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.936 8.694 6.335 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.195 4.195 4 C 0.015 3.985 5 N -0.182 5.182 6 C -0.262 4.262 7 S 0.419 5.581 8 C -0.416 4.416 9 C 0.382 3.618 10 O -0.402 6.402 11 N -0.366 5.366 12 C 0.011 3.989 13 C -0.126 4.126 14 H 0.105 0.895 15 C 0.014 3.986 16 N -0.328 5.328 17 C -0.353 4.353 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.003 3.997 26 C 0.022 3.978 27 H 0.080 0.920 28 O -0.374 6.374 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.222 0.778 37 H 0.234 0.766 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.041 0.959 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -18.076 8.672 6.702 21.139 hybrid contribution 1.166 0.214 -0.069 1.187 sum -16.911 8.886 6.633 20.222 Atomic orbital electron populations 1.21728 0.93773 1.01769 1.02093 1.20431 0.96402 0.96262 0.94064 1.21739 1.01011 0.94631 1.02079 1.20702 0.92247 0.92242 0.93296 1.66045 1.25210 1.28359 0.98616 1.28730 0.98122 0.95764 1.03624 1.84086 1.43140 1.33081 0.97797 1.25555 1.11306 1.07192 0.97521 1.16648 0.79167 0.79239 0.86791 1.90704 1.61166 1.61245 1.27055 1.45965 1.40426 1.39408 1.10841 1.21513 0.95932 0.95641 0.85836 1.22421 0.95238 0.96673 0.98225 0.89509 1.21373 0.85912 0.95352 0.95939 1.44310 1.00682 1.37259 1.50521 1.19086 0.80860 1.13932 1.21442 0.90271 1.24809 0.98265 0.97977 0.99513 1.69760 1.29893 1.23613 1.33845 0.86038 0.83949 0.77792 0.77508 1.21539 1.21568 1.20609 1.22550 0.91153 0.90354 0.95674 1.23302 0.92990 0.87395 0.94133 0.92041 1.86366 1.54186 1.47071 1.49764 0.92147 0.92040 0.92992 0.85513 0.92841 0.91887 0.92336 0.77801 0.76610 0.90824 0.90721 0.95282 0.95783 0.93587 0.87278 0.95943 0.77557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.09 37.16 0.34 -1.02 16 2 C -0.05 -0.60 3.16 -91.77 -0.29 -0.88 16 3 C -0.14 -1.42 9.18 37.16 0.34 -1.08 16 4 C 0.15 1.86 5.39 -83.90 -0.45 1.41 16 5 N -0.47 -5.15 10.30 -11.54 -0.12 -5.27 16 6 C 0.03 0.27 12.22 51.75 0.63 0.90 16 7 S 0.16 1.44 22.37 -107.50 -2.41 -0.97 16 8 C -0.29 -3.57 6.48 -37.10 -0.24 -3.81 16 9 C 0.60 8.47 7.77 -12.85 -0.10 8.37 16 10 O -0.52 -8.63 14.02 5.20 0.07 -8.56 16 11 N -0.72 -9.59 5.39 -61.62 -0.33 -9.92 16 12 C 0.13 1.99 4.99 -4.04 -0.02 1.97 16 13 C -0.11 -1.79 2.75 -88.79 -0.24 -2.04 16 14 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 15 C 0.14 2.75 6.52 -3.07 -0.02 2.73 16 16 N -0.60 -14.80 3.39 -170.07 -0.58 -15.38 16 17 C -0.23 -6.08 10.27 -15.06 -0.15 -6.24 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.06 10.09 55.49 0.56 -25.50 16 21 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.13 2.98 5.62 -2.53 -0.01 2.97 16 26 C 0.08 1.51 3.88 -24.58 -0.10 1.42 16 27 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 28 O -0.57 -9.52 13.47 -35.23 -0.47 -9.99 16 29 H 0.06 0.59 8.07 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.13 1.72 4.95 -51.93 -0.26 1.46 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.40 4.74 7.53 -40.82 -0.31 4.43 16 38 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.11 2.83 5.87 -51.93 -0.30 2.52 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.38 4.88 9.12 45.56 0.42 5.30 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -32.17 379.61 -8.88 -41.05 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.89 Total: 7.98 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.41 Total: 4.34 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.47 Total: -56.06 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.40 Total: -18.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.41 Total: -0.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.17 -8.88 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958472308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.890 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds