Wall clock time and date at job start Tue Mar 31 2020 22:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 C 1.50693 * 109.47055 * 120.00025 * 2 1 3 5 5 N 1.30940 * 122.90972 * 305.51636 * 4 2 1 6 6 C 1.29430 * 117.36872 * 180.02562 * 5 4 2 7 7 S 1.70947 * 110.38831 * 359.72394 * 6 5 4 8 8 C 1.35662 * 122.90390 * 125.51072 * 4 2 1 9 9 C 1.46683 * 126.12999 * 0.02562 * 8 4 2 10 10 O 1.21685 * 120.00149 * 354.28438 * 9 8 4 11 11 N 1.34775 * 120.00238 * 174.28980 * 9 8 4 12 12 C 1.46502 * 120.00183 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47029 * 179.97438 * 12 11 9 14 14 H 1.08999 * 110.63874 * 56.69466 * 13 12 11 15 15 C 1.54320 * 110.72398 * 293.54434 * 13 12 11 16 16 N 1.47020 * 107.27222 * 219.44277 * 15 13 12 17 17 C 1.36939 * 125.64388 * 178.90307 * 16 15 13 18 18 H 1.08000 * 120.00555 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99752 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99912 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47305 * 89.99943 * 21 19 17 23 23 H 1.48506 * 109.46803 * 209.99954 * 21 19 17 24 24 H 1.48497 * 109.47077 * 329.99579 * 21 19 17 25 25 C 1.47419 * 108.70377 * 358.94465 * 16 15 13 26 26 C 1.54910 * 104.83340 * 24.12384 * 25 16 15 27 27 H 1.09003 * 111.00287 * 81.06481 * 26 25 16 28 28 O 1.42897 * 111.00504 * 204.91768 * 26 25 16 29 29 H 1.09004 * 109.46926 * 299.99974 * 1 2 3 30 30 H 1.09001 * 109.47015 * 59.99593 * 1 2 3 31 31 H 1.08995 * 109.47059 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46614 * 240.00433 * 2 1 3 33 33 H 1.08995 * 109.46558 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47067 * 300.00109 * 3 2 1 35 35 H 1.09000 * 109.46872 * 59.99980 * 3 2 1 36 36 H 1.08003 * 124.80386 * 179.97438 * 6 5 4 37 37 H 0.97002 * 120.00182 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.47049 * 60.00035 * 12 11 9 39 39 H 1.09002 * 109.47253 * 299.99828 * 12 11 9 40 40 H 1.09003 * 109.88006 * 338.86603 * 15 13 12 41 41 H 1.09002 * 109.87978 * 100.02648 * 15 13 12 42 42 H 0.96993 * 119.99690 * 179.97438 * 20 19 17 43 43 H 1.09006 * 110.36772 * 142.96738 * 25 16 15 44 44 H 1.09002 * 110.36285 * 265.17567 * 25 16 15 45 45 H 0.96702 * 113.99927 * 292.20117 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6674 -0.3773 2.4430 6 6 2.1657 -1.0603 3.4231 7 16 3.2112 -2.2761 2.8307 8 6 2.9018 -1.7505 1.1776 9 6 3.4774 -2.3357 -0.0381 10 8 3.1039 -1.9555 -1.1321 11 7 4.4197 -3.2945 0.0565 12 6 4.9942 -3.8794 -1.1577 13 6 6.0327 -4.9351 -0.7731 14 1 5.5872 -5.6974 -0.1340 15 6 7.2453 -4.2806 -0.0784 16 7 8.4507 -4.9662 -0.5668 17 6 9.7385 -4.6687 -0.2084 18 1 9.9334 -3.8693 0.4911 19 6 10.7933 -5.3948 -0.7442 20 7 10.5557 -6.3694 -1.5964 21 14 12.5499 -4.9895 -0.2548 22 1 12.9293 -5.7908 0.9366 23 1 13.4641 -5.3120 -1.3798 24 1 12.6529 -3.5437 0.0678 25 6 8.0435 -6.0262 -1.5069 26 6 6.6610 -5.5740 -2.0398 27 1 6.7709 -4.8371 -2.8355 28 8 5.8921 -6.6936 -2.4839 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.9482 -0.8890 4.4670 37 1 4.7177 -3.5974 0.9285 38 1 5.4728 -3.0970 -1.7465 39 1 4.2034 -4.3447 -1.7461 40 1 7.2918 -3.2219 -0.3337 41 1 7.1628 -4.4003 1.0019 42 1 11.2928 -6.8764 -1.9710 43 1 8.7592 -6.1026 -2.3256 44 1 7.9582 -6.9810 -0.9882 45 1 6.2462 -7.1256 -3.2733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958472308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:42 Heat of formation + Delta-G solvation = -43.177456 kcal Electronic energy + Delta-G solvation = -27152.947489 eV Core-core repulsion = 23296.918259 eV Total energy + Delta-G solvation = -3856.029230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.63887 -40.50166 -39.61812 -36.67913 -36.30864 -35.69158 -34.09954 -32.08499 -30.90010 -29.28261 -28.04554 -27.51353 -26.73136 -25.19722 -23.37411 -22.64632 -22.06140 -21.48132 -20.42859 -19.05006 -18.80884 -18.45390 -17.80710 -17.08281 -17.04202 -16.65830 -16.09884 -15.84832 -15.68375 -15.42822 -15.23112 -15.14381 -14.75637 -14.62202 -14.33631 -14.05490 -13.81665 -13.69700 -13.35720 -13.27368 -13.11348 -13.01022 -12.76919 -12.44287 -12.34146 -12.17969 -12.13209 -11.90562 -11.88612 -11.87452 -11.37484 -11.07235 -10.86555 -10.74541 -10.66776 -10.60257 -10.23131 -9.87604 -8.93701 -7.80622 -5.25907 -0.79695 0.17532 0.55588 1.37351 1.47522 1.48562 1.57402 1.92440 2.04735 2.47005 3.14322 3.19064 3.29858 3.54081 3.64139 3.73696 3.87160 3.92071 4.02500 4.08266 4.23584 4.31473 4.40500 4.44215 4.52419 4.58343 4.70783 4.78861 4.83842 4.85570 4.93132 4.94063 5.00966 5.12614 5.21413 5.27729 5.31040 5.42107 5.47456 5.52244 5.73080 6.23721 6.26880 6.57793 6.88035 6.97351 7.06782 7.72824 8.35252 9.21252 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.002609 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.785886 B =10729.766634 C =11420.986309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.130 4.130 4 C 0.151 3.849 5 N -0.492 5.492 6 C 0.050 3.950 7 S 0.204 5.796 8 C -0.329 4.329 9 C 0.596 3.404 10 O -0.553 6.553 11 N -0.711 5.711 12 C 0.148 3.852 13 C -0.090 4.090 14 H 0.093 0.907 15 C 0.139 3.861 16 N -0.623 5.623 17 C -0.239 4.239 18 H 0.084 0.916 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.269 1.269 25 C 0.133 3.867 26 C 0.098 3.902 27 H 0.069 0.931 28 O -0.568 6.568 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.247 0.753 37 H 0.408 0.592 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.036 0.964 42 H 0.248 0.752 43 H 0.079 0.921 44 H -0.007 1.007 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.021 9.703 8.131 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.188 4.188 4 C 0.012 3.988 5 N -0.206 5.206 6 C -0.245 4.245 7 S 0.460 5.540 8 C -0.453 4.453 9 C 0.383 3.617 10 O -0.434 6.434 11 N -0.362 5.362 12 C 0.024 3.976 13 C -0.109 4.109 14 H 0.111 0.889 15 C 0.014 3.986 16 N -0.350 5.350 17 C -0.368 4.368 18 H 0.102 0.898 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.194 1.194 25 C 0.008 3.992 26 C 0.037 3.963 27 H 0.087 0.913 28 O -0.375 6.375 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.263 0.737 37 H 0.244 0.756 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.097 0.903 44 H 0.011 0.989 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.176 9.677 8.524 23.108 hybrid contribution 1.465 -0.114 -0.543 1.566 sum -17.711 9.563 7.981 21.652 Atomic orbital electron populations 1.21668 0.92635 1.01495 1.02826 1.20414 0.97380 0.96607 0.93417 1.21686 1.00150 0.94118 1.02863 1.20822 0.91937 0.92070 0.93970 1.66100 1.26426 1.29491 0.98559 1.29502 0.96039 0.94078 1.04853 1.83922 1.42593 1.32517 0.94950 1.25417 1.12751 1.08419 0.98702 1.16902 0.78773 0.78841 0.87209 1.90690 1.62104 1.62147 1.28477 1.45835 1.40330 1.39349 1.10704 1.21235 0.95256 0.94766 0.86345 1.22251 0.94508 0.97002 0.97126 0.88884 1.21518 0.85171 0.95215 0.96712 1.44590 1.01466 1.37823 1.51137 1.19462 0.82267 1.13850 1.21222 0.89789 1.25633 1.01986 0.98249 0.99942 1.70002 1.30427 1.24512 1.34877 0.85046 0.79293 0.78021 0.76771 1.21391 1.22015 1.19369 1.22324 0.93370 0.89258 0.94296 1.22973 0.90564 0.87865 0.94862 0.91312 1.86341 1.53634 1.46664 1.50906 0.91850 0.90799 0.93731 0.87686 0.94060 0.90646 0.91949 0.73730 0.75648 0.91583 0.90509 0.94963 0.94603 0.94217 0.90283 0.98919 0.75585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.09 71.99 0.65 -1.82 16 2 C -0.06 -1.32 3.16 -11.54 -0.04 -1.36 16 3 C -0.13 -2.63 9.18 71.98 0.66 -1.97 16 4 C 0.15 3.52 5.39 42.09 0.23 3.75 16 5 N -0.49 -9.78 10.30 -190.41 -1.96 -11.74 16 6 C 0.05 0.65 12.22 130.60 1.60 2.25 16 7 S 0.20 3.07 22.37 -56.49 -1.26 1.81 16 8 C -0.33 -7.71 6.48 23.88 0.15 -7.55 16 9 C 0.60 16.65 7.77 86.45 0.67 17.32 16 10 O -0.55 -18.46 14.02 -4.30 -0.06 -18.52 16 11 N -0.71 -18.26 5.39 -467.08 -2.52 -20.78 16 12 C 0.15 4.24 4.99 86.38 0.43 4.67 16 13 C -0.09 -2.92 2.75 -9.61 -0.03 -2.94 16 14 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 15 C 0.14 5.33 6.52 86.73 0.57 5.90 16 16 N -0.62 -30.90 3.39 -691.99 -2.35 -33.25 16 17 C -0.24 -12.99 10.27 84.03 0.86 -12.13 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 19 C -0.07 -3.61 5.49 84.86 0.47 -3.15 16 20 N -0.95 -54.93 10.09 21.65 0.22 -54.71 16 21 Si 0.98 44.49 29.55 68.60 2.03 46.51 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 C 0.13 6.34 5.62 86.86 0.49 6.83 16 26 C 0.10 3.56 3.88 31.99 0.12 3.69 16 27 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 28 O -0.57 -18.36 13.47 -148.98 -2.01 -20.37 16 29 H 0.06 1.17 8.07 -2.38 -0.02 1.15 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 2.92 4.95 -2.39 -0.01 2.91 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.25 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.41 8.99 7.53 -92.71 -0.70 8.29 16 38 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.03 1.23 7.76 -2.39 -0.02 1.21 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.08 4.25 5.87 -2.38 -0.01 4.24 16 44 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.39 9.79 9.12 -74.06 -0.68 9.12 16 Total: -1.00 -70.66 379.61 -1.42 -72.08 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.35 Total: 25.47 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.84 Total: 13.49 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -6.61 Total: -120.48 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -2.07 Total: -38.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.26 Total: 1.81 kcal Total: -70.66 -1.42 -72.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958472308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.907 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds